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// Author: David Alexander
#pragma once
#include <string>
#include <ConsensusCore/Features.hpp>
#include <ConsensusCore/Types.hpp>
namespace ConsensusCore {
struct Read
{
QvSequenceFeatures Features;
std::string Name;
std::string Chemistry;
Read(QvSequenceFeatures features, std::string name, std::string chemistry);
Read(const Read& other);
int Length() const;
std::string ToString() const;
static Read Null();
};
enum StrandEnum
{
FORWARD_STRAND = 0,
REVERSE_STRAND = 1
};
struct MappedRead : public Read
{
StrandEnum Strand;
int TemplateStart;
int TemplateEnd;
bool PinStart;
bool PinEnd;
MappedRead(const Read& read, StrandEnum strand, int templateStart, int templateEnd,
bool pinStart = true, bool pinEnd = true);
MappedRead(const MappedRead& other);
std::string ToString() const;
};
}
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