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Author: Laszlo Kajan <lkajan@rostlab.org>
Description: change interpreter and remove extension from script
Policy §1.4.2 Interpreter Location: 'The preferred specification for the Python interpreter is /usr/bin/python'.
Policy §10.4 Scripts: 'the script name should not include an extension'.
Forwarded: no
--- a/score_conservation.py
+++ b/score_conservation.py
@@ -1,4 +1,4 @@
-#!/usr/bin/env python
+#!/usr/bin/python
################################################################################
# score_conservation.py - Copyright Tony Capra 2007 - Last Update: 03/09/11
@@ -98,7 +98,7 @@
def usage():
- print """\nUSAGE:\npython score_conservation.py [options] alignfile\n\t -alignfile must be in fasta or clustal format.\n\nOPTIONS:\n\t
+ print """\nUSAGE:\nscore_conservation [options] alignfile\n\t -alignfile must be in fasta or clustal format.\n\nOPTIONS:\n\t
-a\treference sequence. Print scores in reference to a specific sequence (ignoring gaps). Default prints the entire column. [sequence name]\n\t
-b\tlambda for window heuristic linear combination. Default=.5 [real in [0,1]]\n
-d\tbackground distribution file, e.g., swissprot.distribution. Default=BLOSUM62 background [filename]\n\t
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