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#!/bin/sh
# autopkgtest check: build and run with default test data, taken from package's readme.txt
# Author: Tatiana Malygina <merlettaia@gmail.com>
set -e
pkg=conservation-code
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/examples/* .
#following call doesn't produce error when default alignment matrix can be found
score_conservation -o alignment.scores 2plc__hssp-filtered.aln
[ -e alignment.scores ]
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