1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
|
#!/bin/sh
# autopkgtest check: build and run with default test data, taken from package's readme.txt
# Author: Tatiana Malygina <merlettaia@gmail.com>
set -e
pkg=conservation-code
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/examples/* .
echo "Checking alignment matrix file usage"
#following call goes ok with valid matrix file
score_conservation -m /usr/share/${pkg}/matrix/blosum100.bla -o alignment.scores 2plc__hssp-filtered.aln
[ -e alignment.scores ]
echo "Checking distribution file usage"
#with valid distribution file name
score_conservation -d /usr/share/${pkg}/distributions/swissprot.distribution -o alignment2.scores 2plc__hssp-filtered.aln
[ -e alignment2.scores ]
|
