1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283
|
# raster3d.py
#
# Copyright 2005, 2006 by Bernhard Lohkamp
# Copyright 2007 by Bernhard Lohkamp, The University of York
# Copyright 2005, 2006 by Paul Emsley, The University of York
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
# BL pyton script for rendering images in COOT
# args not including the output filename
def povray_args():
return ["+FN16", "+A"]
# BL says: dont know how usefull this function is/will be....
# run raster3d
#
def render_image(use_popen=False):
import os
import webbrowser
import sys
coot_r3d_file_name="coot.r3d"
version = raster3d_version()
if (os.name == 'nt' and version[0] == 2):
coot_image_file_name = "coot.tif"
image_format = " -tiff "
else:
coot_image_file_name = "coot.png"
image_format = " -png "
coot.raster3d(coot_r3d_file_name)
r3d_exe = coot_utils.find_exe("render", "PATH")
if (r3d_exe):
r3d_dir = os.path.dirname(r3d_exe)
os.environ['R3D_LIB'] = r3d_dir + "/materials"
r3d_call = r3d_exe + image_format + " -labels " + coot_image_file_name + " < " + coot_r3d_file_name
print("DEBUG:: r3d_call is ", r3d_call)
print("calling render...")
major, minor, micro, releaselevel, serial = sys.version_info
if (major >= 2 and minor >=4):
# new style
import subprocess
if not use_popen:
status = subprocess.call(r3d_call, shell=True)
else:
status = popen_command(r3d_exe,
["-labels", "-png", coot_image_file_name],
coot_r3d_file_name, "r3d.log", 1)
if status:
# something went wrong with raster3d
# maybe same for system call?!?
print("BL WARNING:: some error in raster3d")
return
else:
status = os.system(r3d_call)
print("calling display...")
try:
webbrowser.open(coot_image_file_name,1,1)
except OSError:
print("BL WARNING:: We can't find rendered file ",coot_image_file_name)
# Run either raster3d or povray
#
# @var{image_type} is either 'raster3d' or 'povray'
#
def raytrace(image_type, source_file_name, image_file_name, x_size, y_size):
import os
import webbrowser
import sys
if (image_type == "raster3d"):
# BL says: this is for windows, since tif file
version = raster3d_version()
do_tif = False
if version:
if version[0] == 2:
do_tif = True
if (os.name == 'nt' and do_tif):
render_exe = "render.exe"
image_file_name += ".tif"
image_format = " -tiff "
else:
render_exe = "render"
image_format = " -png "
r3d_exe = coot_utils.find_exe("render", "CCP4_BIN", "PATH")
if (r3d_exe):
r3d_dir = os.path.dirname(r3d_exe)
os.environ['R3D_LIB'] = r3d_dir + "/materials"
#we have to check filenames for spaces for dodgy windows path
image_file_name_mod, source_file_name_mod, space_flag = \
check_file_names_for_space_and_move(image_file_name, source_file_name)
r3d_call = r3d_exe + image_format + " -labels" + image_file_name_mod + " < " + source_file_name_mod
print("DEBUG:: r3d_call is ", r3d_call)
print("calling render...")
major, minor, micro, releaselevel, serial = sys.version_info
if (major >= 2 and minor >=4):
import subprocess
status = subprocess.call(r3d_call, shell=True)
if status:
# something went wrong with raster3d
# maybe same for system call?!?
print("BL WARNING:: some error in raster3d")
return
else:
status = os.system(r3d_call)
# now we have to copy files back if necessary!!
if (space_flag):
import shutil
shutil.move(image_file_name_mod,image_file_name)
shutil.move(source_file_name_mod,source_file_name)
print("calling display...")
try:
webbrowser.open(image_file_name,1,1)
except OSError:
print("BL WARNING:: We can't find rendered file ",image_file_name)
elif (image_type == "povray"):
image_file_name += ".png"
#BL says: conversion of filename, again! Windows is driving me crazy...
image_file_name = os.path.normpath(image_file_name)
# again, we just assume povray exe is pvengine on all systems
povray_exe = coot_utils.find_exe(povray_command_name, "PATH")
if (povray_exe):
image_file_name_mod, source_file_name_mod, space_flag = \
check_file_names_for_space_and_move(image_file_name, source_file_name)
if (os.name == 'nt'):
args = ["/EXIT", "/RENDER"]
else:
args = " "
args += [source_file_name_mod] + povray_args() + ["-UV" , "+W" + str(x_size) , "+H" + str(y_size)]
print("BL INFO:: run povray with args: ", args)
povray_call = [povray_exe] + args + ["+o" + image_file_name_mod]
print("BL DEBUG:: povray command line", povray_call)
major, minor, micro, releaselevel, serial = sys.version_info
if (major >= 2 and minor >=4):
import subprocess
status = subprocess.call(povray_call)
if status:
# something went wrong with raster3d
# maybe same for system call?!?
print("BL WARNING:: some error in povray")
return
else:
os.system(povray_call)
# now we have to copy files back if necessary!!
if (space_flag):
import shutil
shutil.move(image_file_name_mod,image_file_name)
shutil.move(source_file_name_mod,source_file_name)
else: pass
print("calling display...")
try:
webbrowser.open(image_file_name,1,1)
except OSError:
print("BL WARNING:: We can't find rendered file ",image_file_name)
else:
print("Image type ", image_type, " unknown!")
# Converts a ppm file to a bmp file (for windows users) and opens in
# browser or viewer
# actually dont use ppm any more but png, so not needed as such any more
# keep for backwards compatibility
#
def ppm2bmp(ppm_file_name):
import os
import webbrowser
import sys
bmp_file_name, extension = os.path.splitext(ppm_file_name)
# FIXME: horrible hacks!!!
if (extension == ".ppm"):
bmp_file_name += ".bmp"
# BL says: need to do some wired stuff to make sure cmd/system works with
# space in file name , e.g. ' & " thingys
cmd = 'ppm2bmp "'
ppm2bmp_call = cmd + ppm_file_name + '"'
major, minor, micro, releaselevel, serial = sys.version_info
if (major >= 2 and minor >=4):
import subprocess
status = subprocess.call(ppm2bmp_call, shell=True)
if status:
# something went wrong with raster3d
# maybe same for system call?!?
print("BL WARNING:: some error in ppm2bmp")
return
else:
os.system(ppm2bmp_call)
if (extension == ".png"):
bmp_file_name = ppm_file_name
if (not os.path.isfile(bmp_file_name)):
print("BL WARNING:: Cannot find png/bmp file ", bmp_file_name)
else:
print("calling display...")
try:
webbrowser.open(bmp_file_name,1,1)
except OSError:
print("BL WARNING:: We can't open screendump file ",bmp_file_name)
# Tests file names for spaces. there is certainly on problem on windows
# not sure about other OS, yet
def check_file_names_for_space_and_move(image_file_name,source_file_name):
import string, os, shutil
space_flag = False
if (((image_file_name.find(" ") > -1) or (source_file_name.find(" ") > -1)) and (os.name == 'nt')):
# we have spaces, so tmp copy src to C: and run there, then
# copy tmp back to where it should be
image_file_name_mod = "C:\\" + os.path.basename(image_file_name)
source_file_name_mod = "C:\\" + os.path.basename(source_file_name)
shutil.move(source_file_name,source_file_name_mod)
space_flag = True
return image_file_name_mod, source_file_name_mod, space_flag
else:
return image_file_name, source_file_name, space_flag
#raytrace("povray","coot.pov","coot.png",600,600)
# return version as a tuple of 3 numbers (or 2 plus letter)
# or False if not found or problems running raster3d
#
def raster3d_version():
import os
raster3d_exe = coot_utils.find_exe("render", "CCP4_BIN", "PATH")
if not raster3d_exe:
return False
else:
log_file = "raster3_version.tmp"
# BL note: currently -i is a bogus switch, so gives info
status = coot_utils.popen_command(raster3d_exe, ["-i"], [], log_file)
if (status != 0):
return False
else:
fin = open(log_file, 'r')
lines = fin.readlines()
fin.close()
os.remove(log_file)
for line in lines:
if ("Raster3D" in line):
version_string = line[9:]
tmp = version_string.split(".")
try:
minor = int(tmp_min[0])
micro = int(tmp_min[1])
except:
print("WARNING:: problem extracting major version from raster3d")
return False
return [major, minor, micro]
else:
# old style
if (len(tmp[1]) != 2):
print("WARNING:: cannot deal with this version.")
return False
else:
try:
minor = int(tmp[1][0])
except:
print("WARNING:: problem extracting minor version from raster3d")
return False
micro = tmp[1][1]
return [major, minor, micro]
return False
|