File: bias_template.inp

package info (click to toggle)
cp2k 2025.1-1.1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 366,832 kB
  • sloc: fortran: 955,049; f90: 21,676; ansic: 18,058; python: 13,378; sh: 12,179; xml: 2,173; makefile: 964; pascal: 845; perl: 492; lisp: 272; cpp: 137; csh: 16
file content (157 lines) | stat: -rw-r--r-- 4,059 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
&GLOBAL
  PRINT_LEVEL LOW
  PROJECT bias_template
  RUN_TYPE MC
&END GLOBAL

&MOTION
  &MC
    ENSEMBLE TRADITIONAL
    ETA 0.0
    IPRINT 1
    LBIAS no
    LSTOP no
    NMOVES 1
    NSTEP 1
    PRESSURE 1.013
    RESTART no
    RESTART_FILE_NAME mc_restartb_1
    TEMPERATURE 398.0
    VIRIAL_TEMPS 300.0
    &AVBMC
      AVBMC_ATOM 1
      AVBMC_RMAX 5.0
      AVBMC_RMIN 1.0
      PBIAS 0.5
    &END AVBMC
    &MAX_DISPLACEMENTS
      &BOX_DISPLACEMENTS
        RMVOLUME 500.0
      &END BOX_DISPLACEMENTS
      &MOL_DISPLACEMENTS
        RMANGLE 3.0
        RMBOND 0.074
        RMDIHEDRAL 3.0
        RMROT 26.0
        RMTRANS 0.38
      &END MOL_DISPLACEMENTS
    &END MAX_DISPLACEMENTS
    &MOVE_PROBABILITIES
      PMAVBMC 0.0
      PMHMC 0.0
      PMSWAP 0.0
      PMTRAION 0.20
      PMTRANS 0.75
      PMVOLUME 0.0
      &BOX_PROBABILITIES
        PMHMC_BOX 1.0
        PMVOL_BOX 1.0
      &END BOX_PROBABILITIES
      &MOL_PROBABILITIES
        PMAVBMC_MOL 1.0
        PMROT_MOL 1.0
        PMSWAP_MOL 1.0
        PMTRAION_MOL 1.0
        PMTRANS_MOL 1.0
      &END MOL_PROBABILITIES
    &END MOVE_PROBABILITIES
    &MOVE_UPDATES
      IUPTRANS 100
      IUPVOLUME 100
    &END MOVE_UPDATES
  &END MC
&END MOTION

&FORCE_EVAL
  METHOD FIST
  &MM
    &FORCEFIELD
      &BEND
        ATOMS H O H
        K 0.0
        THETA0 1.82422
      &END BEND
      &BOND
        ATOMS O H
        K 0.0
        R0 1.844
      &END BOND
      &CHARGE
        ATOM O
        CHARGE -0.8476
      &END CHARGE
      &CHARGE
        ATOM H
        CHARGE 0.4238
      &END CHARGE
      &NONBONDED
        &LENNARD-JONES
          ATOMS O O
          EPSILON 78.19580
          RCUT 5.480
          SIGMA 3.1655
        &END LENNARD-JONES
        &LENNARD-JONES
          ATOMS O H
          EPSILON 0.0
          RCUT 5.480
          SIGMA 3.1655
        &END LENNARD-JONES
        &LENNARD-JONES
          ATOMS H H
          EPSILON 0.0
          RCUT 5.480
          SIGMA 3.1655
        &END LENNARD-JONES
      &END NONBONDED
      &SPLINE
        EMAX_SPLINE 1000000.0
      &END SPLINE
    &END FORCEFIELD
    &POISSON
      &EWALD
        ALPHA 0.25
        EWALD_ACCURACY 1.0E-6
        EWALD_TYPE ewald
        GMAX 25
      &END EWALD
    &END POISSON
  &END MM
  &SUBSYS
    &CELL
      ABC 13.7151207699 13.7151207699 13.7151207699
    &END CELL
    &COORD
      O      11.667599837210      7.964352234664      0.059453614019
      H      10.873359634781      8.005423314626      0.665667823055
      H      11.364979095795      7.770411108906     -0.873716837951
      O       2.314161441602      5.011228167767      2.784706973673
      H       1.663128370368      5.686998340596      3.130381117447
      H       2.659721328394      5.306531429441      1.893985965664
      O      10.262864742466      5.548805003571     11.360725453725
      H      10.424041748648      4.666485986338     11.802918991113
      H       9.436479204754      5.494708086386     10.800225647804
      O       5.937092785694     12.752770338234      7.554822749656
      H       6.459679552548     12.731874699056      8.407152758147
      H       6.560379344025     12.890048310674      6.784973290144
      O       1.052476316752      3.192494253568      0.284763135867
      H       1.009686510209      3.892635795528      0.997483876183
      H       1.385134340137      3.601676794269     -0.564888471374
      O      11.621014134223      7.899470257763      6.835708666826
      H      10.723243819476      8.290315257093      7.038806299646
      H      12.107936378358      8.496446358905      6.198114886544
      O       3.255054397643      5.532098285916     13.500752220167
      H       3.169785700155      4.860242146843     12.764995074351
      H       3.889107504717      6.253294143532     13.221731148935
    &END COORD
    &TOPOLOGY
      CONNECTIVITY MOL_SET
      &MOL_SET
        &MOLECULE
          CONN_FILE_NAME topology_atoms_WAT.psf
          NMOL 7
        &END MOLECULE
      &END MOL_SET
    &END TOPOLOGY
  &END SUBSYS
&END FORCE_EVAL