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#!/usr/bin/env python3
import sys
import re
import tempfile
import os
import logging
import argparse
import errno
import contextlib
from os import path
from hashlib import md5
from io import StringIO
from prettify_cp2k import normalizeFortranFile
from prettify_cp2k import replacer
sys.path.insert(0, path.join(path.dirname(path.abspath(__file__)), "fprettify"))
from fprettify import reformat_ffile, fparse_utils, log_exception
TO_UPCASE_RE = re.compile(
r"""
(?P<toUpcase>
\.(?:and|eq|eqv|false|ge|gt|le|lt|ne|neqv|not|or|true)\.
|
(?<![\w%#]) # do not match stmts/intrinsics midword or called as type-bound procedures
(?<!%\ ) # do not match stmts/intrinsics when being called as type-bound procedure with a space in between
(?<!subroutine\ )(?<!function\ )(?<!::\ ) # do not match stmts/intrinsics when used as procedure names
(?:
(?: # statements:
a(?:llocat(?:able|e)|ssign(?:|ment))
|c(?:a(?:ll|se)|haracter|lose|o(?:m(?:mon|plex)|nt(?:ains|inue))|ycle)
|d(?:ata|eallocate|imension|o(?:|uble))
|e(?:lse(?:|if|where)|n(?:d(?:|do|file|if)|try)|quivalence|x(?:it|ternal))
|f(?:or(?:all|mat)|unction)
|goto
|i(?:f|mplicit|n(?:clude|quire|t(?:e(?:ger|nt|rface)|rinsic)))
|logical
|module
|n(?:amelist|one|ullify)
|o(?:nly|p(?:en|erator|tional))
|p(?:a(?:rameter|use)|ointer|r(?:ecision|i(?:nt|vate)|o(?:cedure|gram))|ublic)
|re(?:a[dl]|cursive|sult|turn|wind)
|s(?:ave|e(?:lect|quence)|top|ubroutine)
|t(?:arget|hen|ype)
|use
|w(?:h(?:ere|ile)|rite)
)
| (?: # intrinsic functions:
a(?:bs|c(?:har|os)|djust[lr]|i(?:mag|nt)|ll(?:|ocated)|n(?:int|y)|s(?:in|sociated)|tan2?)
|b(?:it_size|test)
|c(?:eiling|har|mplx|o(?:njg|sh?|unt)|shift)
|d(?:ate_and_time|ble|i(?:gits|m)|ot_product|prod)
|e(?:oshift|psilon|xp(?:|onent))
|f(?:loor|raction)
|huge
|i(?:a(?:char|nd)|b(?:clr|its|set)|char|eor|n(?:dex|t)|or|shftc?)
|kind
|l(?:bound|en(?:|_trim)|g[et]|l[et]|og(?:|10|ical))
|m(?:a(?:tmul|x(?:|exponent|loc|val))|erge|in(?:|exponent|loc|val)|od(?:|ulo)|vbits)
|n(?:earest|int|ot)
|p(?:ack|r(?:e(?:cision|sent)|oduct))
|r(?:a(?:dix|n(?:dom_(?:number|seed)|ge))|e(?:peat|shape)|rspacing)
|s(?:ca(?:le|n)|e(?:lected_(?:int_kind|real_kind)|t_exponent)|hape|i(?:gn|nh?|ze)|p(?:acing|read)|qrt|um|ystem_clock)
|t(?:anh?|iny|r(?:ans(?:fer|pose)|im))
|u(?:bound|npack)
|verify
) (?=\ *\()
)
(?![\w%])
)
""",
flags=re.IGNORECASE | re.VERBOSE,
)
TO_UPCASE_OMP_RE = re.compile(
r"""
(?<![\w%#])
(?P<toUpcase>
(?:
atomic|barrier|c(?:apture|ritical)|do|end|flush|if|master|num_threads|ordered|parallel|read
|s(?:ection(?:|s)|ingle)|t(?:ask(?:|wait|yield)|hreadprivate)|update|w(?:orkshare|rite)|!\$omp
)
| (?:
a|co(?:llapse|py(?:in|private))|default|fi(?:nal|rstprivate)|i(?:and|eor|or)|lastprivate
|m(?:ax|ergeable|in)|n(?:one|owait)|ordered|private|reduction|shared|untied|\.(?:and|eqv|neqv|or)\.
)
| omp_(?:dynamic|max_active_levels|n(?:ested|um_threads)|proc_bind|s(?:tacksize|chedule)|thread_limit|wait_policy)
)
(?![\w%])
""",
flags=re.IGNORECASE | re.VERBOSE,
)
LINE_PARTS_RE = re.compile(
r"""
(?P<commands>[^\"'!]*)
(?P<comment>!.*)?
(?P<string>
(?P<qchar>[\"'])
.*?
(?P=qchar))?
""",
re.VERBOSE,
)
@contextlib.contextmanager
def rewind(fhandle):
try:
yield fhandle
finally:
fhandle.seek(0)
def upcaseStringKeywords(line):
"""Upcases the fortran keywords, operators and intrinsic routines
in line"""
res = ""
start = 0
while start < len(line):
m = LINE_PARTS_RE.match(line[start:])
if not m:
raise SyntaxError("Syntax error, open string")
res = res + TO_UPCASE_RE.sub(
lambda match: match.group("toUpcase").upper(), m.group("commands")
)
if m.group("comment"):
res = res + m.group("comment")
if m.group("string"):
res = res + m.group("string")
start = start + m.end()
return res
def upcaseKeywords(infile, outfile, upcase_omp):
"""Writes infile to outfile with all the fortran keywords upcased"""
for line in infile:
line = upcaseStringKeywords(line)
if upcase_omp and normalizeFortranFile.OMP_DIR_RE.match(line):
line = TO_UPCASE_OMP_RE.sub(
lambda match: match.group("toUpcase").upper(), line
)
outfile.write(line)
def prettifyFile(
infile,
filename,
normalize_use,
decl_linelength,
decl_offset,
reformat,
indent,
whitespace,
upcase_keywords,
upcase_omp,
replace,
):
"""prettifyes the fortran source in infile into a temporary file that is
returned. It can be the same as infile.
if normalize_use normalizes the use statements (defaults to true)
if upcase_keywords upcases the keywords (defaults to true)
if replace does the replacements contained in replacer.py (defaults
to false)
does not close the input file"""
max_pretty_iter = 5
logger = logging.getLogger("prettify-logger")
if is_fypp(infile):
logger.warning(
"fypp directives not fully supported, running only fprettify",
extra={"ffilename": filename},
)
replace = False
normalize_use = False
upcase_keywords = False
# create a temporary file first as a copy of the input file
inbuf = StringIO(infile.read())
hash_prev = md5(inbuf.getvalue().encode("utf8"))
for _ in range(max_pretty_iter):
if replace:
outbuf = StringIO()
replacer.replaceWords(inbuf, outbuf)
outbuf.seek(0)
inbuf.close()
inbuf = outbuf
if reformat: # reformat needs to be done first
outbuf = StringIO()
try:
reformat_ffile(
inbuf,
outbuf,
indent_size=indent,
whitespace=whitespace,
orig_filename=filename,
)
except fparse_utils.FprettifyParseException as e:
log_exception(
e, "fprettify could not parse file, file is not prettified"
)
outbuf.close()
inbuf.seek(0)
else:
outbuf.seek(0)
inbuf.close()
inbuf = outbuf
normalize_use_succeeded = True
if normalize_use:
outbuf = StringIO()
try:
normalizeFortranFile.rewriteFortranFile(
inbuf,
outbuf,
indent,
decl_linelength,
decl_offset,
orig_filename=filename,
)
except normalizeFortranFile.InputStreamError as exc:
logger.exception(
"normalizeFortranFile could not parse file, file is not normalized",
extra={"ffilename": filename},
)
outbuf.close()
inbuf.seek(0)
normalize_use_succeeded = False
else:
outbuf.seek(0)
inbuf.close()
inbuf = outbuf
if upcase_keywords and normalize_use_succeeded:
outbuf = StringIO()
upcaseKeywords(inbuf, outbuf, upcase_omp)
outbuf.seek(0)
inbuf.close()
inbuf = outbuf
hash_new = md5(inbuf.getvalue().encode("utf8"))
if hash_prev.digest() == hash_new.digest():
return inbuf
hash_prev = hash_new
else:
raise RuntimeError(
"Prettify did not converge in {} steps.".format(max_pretty_iter)
)
def prettifyInplace(filename, backupdir=None, stdout=False, **kwargs):
"""Same as prettify, but inplace, replaces only if needed
:return: True if file was modified, False if otherwise. If stdin/stdout, always False.
"""
if filename == "stdin":
infile = tempfile.TemporaryFile(mode="r+")
infile.write(sys.stdin.read())
infile.seek(0)
else:
infile = open(filename, "r", encoding="utf8")
outfile = prettifyFile(infile=infile, filename=filename, **kwargs)
if stdout:
outfile.seek(0)
sys.stdout.write(outfile.read())
outfile.close()
return False
if infile == outfile:
infile.close()
return False
infile.seek(0)
outfile.seek(0)
changed = True
for line1, line2 in zip(infile, outfile):
if line1 != line2:
break
else:
changed = False
if changed:
if backupdir:
bkName = path.join(backupdir, path.basename(filename))
with open(bkName, "w", encoding="utf8") as fhandle:
infile.seek(0)
fhandle.write(infile.read())
infile.close() # close it here since we're going to overwrite it
with open(filename, "w", encoding="utf8") as fhandle:
outfile.seek(0)
fhandle.write(outfile.read())
else:
infile.close()
outfile.close()
return changed
def is_fypp(infile):
FYPP_SYMBOLS = r"(#|\$|@)"
FYPP_LINE = r"^\s*" + FYPP_SYMBOLS + r":"
FYPP_INLINE = r"(" + FYPP_SYMBOLS + r"{|}" + FYPP_SYMBOLS + r")"
FYPP_RE = re.compile(r"(" + FYPP_LINE + r"|" + FYPP_INLINE + r")")
infile.seek(0)
with rewind(infile) as fhandle:
for line in fhandle.readlines():
if FYPP_RE.search(line):
return True
return False
# based on https://stackoverflow.com/a/31347222
def argparse_add_bool_arg(parser, name, default, helptxt):
dname = name.replace("-", "_")
group = parser.add_mutually_exclusive_group(required=False)
group.add_argument(
"--{}".format(name), dest=dname, action="store_true", help=helptxt
)
group.add_argument("--no-{}".format(name), dest=dname, action="store_false")
parser.set_defaults(**{dname: default})
# from https://stackoverflow.com/a/600612
def mkdir_p(p):
try:
os.makedirs(p)
except OSError as exc: # Python >2.5
if exc.errno == errno.EEXIST and path.isdir(p):
pass
else:
raise
def abspath(p):
return path.abspath(path.expanduser(p))
def main(argv):
parser = argparse.ArgumentParser(
description="Auto-format F90 source files",
formatter_class=argparse.ArgumentDefaultsHelpFormatter,
epilog="""\
If no files are given, stdin is used.
Note: for editor integration, use options --no-normalize-use --no-report-errors""",
)
parser.add_argument("--indent", type=int, default=3)
parser.add_argument("--whitespace", type=int, default=2, choices=range(0, 5))
parser.add_argument("--decl-linelength", type=int, default=100)
parser.add_argument("--decl-offset", type=int, default=50)
parser.add_argument("--backup-dir", type=abspath, default=abspath("preprettify"))
argparse_add_bool_arg(parser, "upcase", True, "Upcasing fortran keywords."),
argparse_add_bool_arg(
parser,
"normalize-use",
True,
"""\
Sorting and alignment of variable declarations and USE statements, removal of unused list entries.
The line length of declarations is controlled by --decl-linelength=n, the offset of the variable list
is controlled by --decl-offset=n.""",
)
argparse_add_bool_arg(parser, "omp-upcase", True, "Upcasing OMP directives.")
argparse_add_bool_arg(
parser,
"reformat",
True,
"""\
Auto-indentation, auto-alignment and whitespace formatting.
Amount of whitespace controlled by --whitespace = 0, 1, 2.
For indenting with a relative width of n columns specify --indent=n.
For manual formatting of specific lines:
- disable auto-alignment by starting line continuation with an ampersand '&'.
- completely disable reformatting by adding a comment '!&'.
For manual formatting of a code block, use:
- start a manually formatted block with a '!&<' comment and close it with a '!&>' comment.""",
)
argparse_add_bool_arg(
parser,
"replace",
True,
"If requested the replacements performed by the replacer.py script are also performed. Note: these replacements are specific to CP2K.",
)
argparse_add_bool_arg(parser, "stdout", False, "write output to stdout")
argparse_add_bool_arg(
parser,
"do-backup",
False,
"store backups of original files in backup-dir (--backup-dir option)",
)
argparse_add_bool_arg(
parser, "quiet", False, "don't show summary or list of reformatted files"
)
argparse_add_bool_arg(parser, "report-errors", True, "report warnings and errors")
argparse_add_bool_arg(parser, "debug", False, "increase log level to debug")
parser.add_argument("files", metavar="file", type=str, nargs="*", default=["stdin"])
args = parser.parse_args(argv)
if args.do_backup and not (args.stdout or args.files == ["stdin"]):
mkdir_p(args.backup_dir)
level = logging.CRITICAL
if args.report_errors:
if args.debug:
level = logging.DEBUG
else:
level = logging.ERROR
# the fprettify logger provides filename and line number in case of errors
shandler = logging.StreamHandler()
shandler.setLevel(level)
shandler.setFormatter(
logging.Formatter("%(levelname)s %(ffilename)s:%(fline)s: %(message)s")
)
fprettify_logger = logging.getLogger("fprettify-logger")
fprettify_logger.setLevel(level)
fprettify_logger.addHandler(shandler)
# the prettify_cp2k loggers only provide the filename in their messages
shandler = logging.StreamHandler()
shandler.setLevel(level)
shandler.setFormatter(logging.Formatter("%(levelname)s %(ffilename)s: %(message)s"))
logger = logging.getLogger("prettify-logger")
logger.setLevel(level)
logger.addHandler(shandler)
failure = 0
total_prettified = 0
for filename in args.files:
if not path.isfile(filename) and not filename == "stdin":
logger.error(f"file '{filename}' does not exist")
failure += 1
continue
try:
changed = prettifyInplace(
filename,
backupdir=args.backup_dir if args.do_backup else None,
stdout=args.stdout or filename == "stdin",
normalize_use=args.normalize_use,
decl_linelength=args.decl_linelength,
decl_offset=args.decl_offset,
reformat=args.reformat,
indent=args.indent,
whitespace=args.whitespace,
upcase_keywords=args.upcase,
upcase_omp=args.omp_upcase,
replace=args.replace,
)
if changed and not args.quiet:
print(f"prettified {filename}")
total_prettified += 1
except Exception:
logger.exception("processing file failed", extra={"ffilename": filename})
failure += 1
if not (args.stdout or filename == "stdin" or args.quiet):
print(
f"{total_prettified} file(s) prettified, {len(args.files) - total_prettified} file(s) left unchanged."
)
return failure > 0
if __name__ == "__main__":
sys.exit(main(sys.argv[1:]))
|