File: 2gly.pot

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cp2k 2025.2-1
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*>>>>>>>   AMBER FF Converted into CHARMM FF style                      <<<<<<<
*>>>>>>>   Generated on :: 20060905 171526.417 +0200 by :: teo          <<<<<<<
*>>>>>>>   pcihpc07                                                     <<<<<<<
*>>>>>>>   Leap Title :: NGLY                                           <<<<<<<
*>>>>>>>   Send all comments related to the FFs conversion to           <<<<<<<
*>>>>>>>   teodoro.laino@gmail.com                                      <<<<<<<
 
BONDS
!
!V(bond) = Kb(b - b0)**2
!
!Kb: kcal/mole/A**2
!b0: A
!
!atom type Kb          b0
!
CT1  HP     340.000000000    1.090000000
N3   H11    434.000000000    1.010000000
CT2  H12    340.000000000    1.090000000
N    H2     434.000000000    1.010000000
C1   O      570.000000000    1.229000000
C1   N      490.000000000    1.335000000
CT1  C1     317.000000000    1.522000000
N3   CT1    367.000000000    1.471000000
C2   O2     656.000000000    1.250000000
CT2  C2     317.000000000    1.522000000
N    CT2    337.000000000    1.449000000
 
ANGLES
!
!V(angle) = Ktheta(Theta - Theta0)**2
!
!V(Urey-Bradley) = Kub(S - S0)**2
!
!Ktheta: kcal/mole/rad**2
!Theta0: degrees
!Kub: kcal/mole/A**2 (Urey-Bradley)
!S0: A
!
!atom types     Ktheta    Theta0   Kub     S0
!
C1   N    H2      50.000000000  120.000051429
HP   CT1  C1      50.000000000  109.500046929
HP   CT1  HP      35.000000000  109.500046929
H11  N3   CT1     50.000000000  109.500046929
H11  N3   H11     35.000000000  109.500046929
N3   CT1  HP      50.000000000  109.500046929
H12  CT2  C2      50.000000000  109.500046929
H12  CT2  H12     35.000000000  109.500046929
H2   N    CT2     50.000000000  118.040050474
N    CT2  H12     50.000000000  109.500046929
O    C1   N       80.000000000  122.900052672
C1   N    CT2     50.000000000  121.900052243
CT1  C1   O       80.000000000  120.400051601
CT1  C1   N       70.000000000  116.600049972
N3   CT1  C1      80.000000000  111.200047658
O2   C2   O2      80.000000000  126.000054001
CT2  C2   O2      70.000000000  117.000050143
N    CT2  C2      63.000000000  110.100047186
 
DIHEDRALS
!
!V(dihedral) = Kchi(1 + cos(n(chi) - delta))
!
!Kchi: kcal/mole
!n: multiplicity
!delta: degrees
!
!atom types             Kchi    n   delta
!
O    C1   N    H2       2.000000000    1    0.000000000
O    C1   N    H2       2.500000000    2  180.000077144
C1   N    CT2  H12      0.000000000    2    0.000000000
HP   CT1  C1   O        0.000000000    2    0.000000000
HP   CT1  C1   N        0.000000000    2    0.000000000
CT1  C1   N    H2       2.500000000    2  180.000077144
H11  N3   CT1  HP       0.155555556    3    0.000000000
H11  N3   CT1  C1       0.155555556    3    0.000000000
H12  CT2  C2   O2       0.000000000    2    0.000000000
H2   N    CT2  H12      0.000000000    2    0.000000000
H2   N    CT2  C2       0.000000000    2    0.000000000
O    C1   N    CT2      2.500000000    2  180.000077144
C1   N    CT2  C2       0.800000000    1    0.000000000
C1   N    CT2  C2       0.850000000    2  180.000077144
CT1  C1   N    CT2      2.500000000    2  180.000077144
N3   CT1  C1   O        0.000000000    2    0.000000000
N3   CT1  C1   N        0.000000000    2    0.000000000
N    CT2  C2   O2       0.000000000    2    0.000000000
C1   CT2  N    H2       1.100000000    2  180.000077144
CT1  N    C1   O       10.500000000    2  180.000077144
CT2  O2   C2   O2      10.500000000    2  180.000077144
 
IMPROPER
!
!V(improper) = Kpsi(psi - psi0)**2
!
!Kpsi: kcal/mole/rad**2
!psi0: degrees
!note that the second column of numbers (0) is ignored
!
!atom types           Kpsi                   psi0
!
 
NONBONDED
!
!V(Lennard-Jones) = Eps,i,j[(Rmin,i,j/ri,j)**12 - 2(Rmin,i,j/ri,j)**6]
!
!epsilon: kcal/mole, Eps,i,j = sqrt(eps,i * eps,j)
!Rmin/2: A, Rmin,i,j = Rmin/2,i + Rmin/2,j
!
!atom  ignored    epsilon      Rmin/2   ignored   eps,1-4       Rmin/2,1-4
!
N3       0.000000000    0.170000000    1.824000000
H11      0.000000000    0.015700000    0.600000000
CT1      0.000000000    0.109400000    1.908000000
HP       0.000000000    0.015700000    1.099999999
C1       0.000000000    0.086000000    1.908000000
O        0.000000000    0.210000000    1.661200000
N        0.000000000    0.170000000    1.824000000
H2       0.000000000    0.015700000    0.600000000
CT2      0.000000000    0.109400000    1.908000000
H12      0.000000000    0.015700000    1.386999999
C2       0.000000000    0.086000000    1.908000000
O2       0.000000000    0.210000000    1.661200000
 
END

!
! This Section can be cutted & pasted into the Fist input file..
!
CHARGES
N3       0.190200000
H11      0.205600000
CT1     -0.076600000
HP       0.083900000
C1       0.683699999
O       -0.581900002
N       -0.442000000
H2       0.295200000
CT2     -0.150900000
H12      0.103500000
C2       0.577099998
O2      -0.743200002
END CHARGES