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/* $Id: moses.h,v 1.10 2011-03-28 12:36:03 cizzo Exp $
*
* This file is part of the VIMOS Pipeline
* Copyright (C) 2002-2006 European Southern Observatory
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
*/
/*
* $Author: cizzo $
* $Date: 2011-03-28 12:36:03 $
* $Revision: 1.10 $
* $Name: not supported by cvs2svn $
*/
#ifndef MOSES_H
#define MOSES_H
#include <cpl.h>
CPL_BEGIN_DECLS
cpl_table *mos_hough_table(cpl_table *, const char *, const char *);
cpl_image *mos_remove_bias(cpl_image *, cpl_image *, cpl_table *);
cpl_image *mos_normalise_flat(cpl_image *, cpl_image *, cpl_table *,
cpl_table *, double, double, double, double,
int, int);
cpl_image *mos_normalise_longflat(cpl_image *, int, int, int);
cpl_error_code mos_arc_background_1D(float *, float *, int, int, int);
cpl_image *mos_arc_background(cpl_image *, int, int);
int mos_lines_width(const float *, int);
cpl_vector *mos_peak_candidates(const float *, int, float, float);
cpl_vector *mos_refine_peaks(const float *, int, cpl_vector *, int);
void mos_set_multiplex(int);
cpl_bivector *mos_identify_peaks(cpl_vector *, cpl_vector *,
double, double, double);
cpl_bivector *mos_identify_peaks_new(cpl_vector *, cpl_vector *,
double, double, double);
cpl_bivector *mos_find_peaks(const float *, int, cpl_vector *,
cpl_polynomial *, double, int);
double mos_eval_dds(cpl_polynomial *, double, double, double, double);
cpl_polynomial *mos_poly_wav2pix(cpl_bivector *, int, double, int,
int *, double *,
cpl_bivector **pixwav_used);
cpl_polynomial *mos_poly_pix2wav(cpl_bivector *, int, double, int,
int *, double *);
cpl_image *mos_wavelength_calibration_raw(const cpl_image *, cpl_vector *,
double, float, int, int, double,
double, double *, double *, int *,
double *, cpl_table *, cpl_image *,
cpl_image *, cpl_table *, cpl_mask *,
cpl_table *detected_lines,
double disp_tolerance,
double ratio_tolerance);
cpl_error_code mos_interpolate_wavecalib_slit(cpl_table *, cpl_table *,
int, int);
cpl_error_code mos_interpolate_wavecalib(cpl_table *, cpl_image *, int, int);
int mos_clean_outliers(cpl_table *, const char *);
cpl_table *mos_locate_spectra(cpl_mask *);
cpl_error_code mos_validate_slits(cpl_table *);
cpl_error_code mos_rotate_slits(cpl_table *, int, int, int);
cpl_table *mos_identify_slits(cpl_table *, cpl_table *, cpl_table *);
cpl_table *mos_identify_slits_fast(cpl_table *, cpl_table *, cpl_table *);
cpl_table *mos_identify_slits_linear(cpl_table *, cpl_table *);
cpl_table *mos_trace_flat(cpl_image *, cpl_table *, double,
double, double, double);
cpl_table *mos_poly_trace(cpl_table *, cpl_table *, int);
cpl_error_code mos_global_trace(cpl_table *, cpl_table *, int);
cpl_image *mos_spatial_calibration(cpl_image *, cpl_table *, cpl_table *,
double, double, double, double, int,
cpl_image *);
cpl_image *mos_wavelength_calibration_final(cpl_image *, cpl_table *,
cpl_vector *, double, float, int,
int, double, double, double *,
double *, int *, double *,
cpl_table *, cpl_image *,
cpl_image *, cpl_table *,
cpl_table *detected_lines,
double disp_tolerance,
double ratio_tolerance);
cpl_table *mos_global_distortion(cpl_table *, cpl_table *,
cpl_table *, cpl_table *, double);
cpl_table *mos_average_global_distortion(cpl_table **, int, double, double);
cpl_table *mos_build_slit_location(cpl_table *, cpl_table *, int);
cpl_table *mos_build_curv_coeff(cpl_table *, cpl_table *, cpl_table *);
cpl_table *mos_build_disp_coeff(cpl_table *, cpl_table *);
cpl_table *mos_wavelength_align(cpl_image *, cpl_table *, double, double,
double, cpl_table *, cpl_vector *, int,
int, cpl_image *, int);
cpl_table * mos_wavelength_align_get_offsets(const double firstLambda,
const double lastLambda,
const double refwave, const int sradius,
const cpl_vector * skylines, int highres, const cpl_table * idscoeff,
const cpl_table * slits, const cpl_image * image);
cpl_table *mos_wavelength_align_lss(cpl_image *, double, double, double,
cpl_table *, cpl_vector *, int, int,
cpl_image *, int);
cpl_image *mos_wavelength_calibration(cpl_image *, double, double, double,
double, cpl_table *, int);
cpl_image *mos_map_pixel(cpl_table *, double, double, double, double, int);
cpl_image *mos_map_idscoeff(cpl_table *, int, double, double, double);
cpl_image *mos_map_wavelengths(cpl_image *, cpl_image *, cpl_table *,
cpl_table *, double, double, double, double);
cpl_image *mos_map_spectrum(cpl_image *, cpl_image *, cpl_image *, cpl_table *,
cpl_table *, double, double, double, double, int);
cpl_image *mos_subtract_sky(cpl_image *, cpl_table *, cpl_table *, double,
double, double, double);
cpl_table *mos_sky_map(cpl_image *, cpl_image *, double, cpl_image *);
cpl_table *mos_sky_map_super(cpl_image *, cpl_image *, double, double, int,
cpl_image *);
cpl_image *mos_sky_local_old(cpl_image *spectra, cpl_table *slits);
cpl_image *mos_sky_local(cpl_image *, cpl_table *, int);
cpl_error_code mos_clean_cosmics(cpl_image *, float, float, float);
cpl_error_code mos_clean_bad_pixels(cpl_image *, cpl_table *, int);
double mos_distortions_rms(cpl_image *, cpl_vector *, double, double, int, int);
cpl_image *mos_spatial_map(cpl_image *, cpl_table *, cpl_table *, double,
double, double, double);
cpl_image *mos_detect_objects(cpl_image *, cpl_table *, int, int, int, double);
cpl_image **mos_extract_objects(cpl_image *science, cpl_image *science_var,
cpl_image *sky,
cpl_table *objects, int extraction, double ron,
double gain, int ncombined);
int mos_spectral_resolution(cpl_image *, double, double, double, int,
double *, double *, double *, double *, int *);
cpl_table *mos_resolution_table(cpl_image *image, double startwave,
double dispersion, int saturation,
cpl_vector *lines);
double mos_integrate_signal(cpl_image *, cpl_image *, int, int, double, double);
cpl_polynomial *mos_montecarlo_polyfit(cpl_table *points, cpl_table *evaluate,
int samples, int order);
cpl_error_code mos_randomise_image(cpl_image *, double ron,
double gain, double bias);
/* Instrument dependent! */
double mos_get_gain_vimos(cpl_propertylist *);
cpl_table *mos_load_overscans_vimos(const cpl_propertylist *, int);
cpl_table *mos_load_overscans_fors(const cpl_propertylist *);
cpl_table *mos_load_slits_vimos(cpl_propertylist *, int include_ref);
int mos_check_multiplex(cpl_table *);
int mos_check_multiplex_old(cpl_table *);
int mos_assign_multiplex_group(cpl_table *);
cpl_table *mos_load_slits_fors_mxu(cpl_propertylist *);
cpl_table *mos_load_slits_fors_mos(cpl_propertylist *);
cpl_table *mos_load_slits_fors_lss(cpl_propertylist *);
cpl_table *mos_load_slits_fors_pmos(cpl_propertylist *);
cpl_error_code mos_refmask_find_gaps(cpl_mask *, cpl_image *, double);
cpl_error_code mos_saturation_process(cpl_image *);
cpl_error_code mos_subtract_background(cpl_image *);
cpl_error_code mos_object_intersect(cpl_table **, cpl_table *, int, float);
int mos_get_maxobjs_per_slit(cpl_table *);
int mos_get_nobjects(cpl_table *);
int mos_check_slits(cpl_table *, float);
int *fors_get_nobjs_perslit(cpl_table *);
int mos_rebin_signal(cpl_image **, int);
int mos_rebin_error(cpl_image **, int);
cpl_table *mos_photometric_calibration(cpl_image *, double, double, double,
double, cpl_table *, double, cpl_table *,
int);
int map_table(cpl_image *, double, double, cpl_table *,
const char *, const char *);
cpl_image *mos_ksigma_stack(cpl_imagelist *imlist,
double klow, double khigh, int kiter,
cpl_image **);
cpl_image *mos_apply_photometry(cpl_image *, cpl_table *response,
cpl_table *ext_table, double startwave,
double dispersion, double gain,
double exptime, double airmass);
cpl_image *mos_propagate_photometry_error(cpl_image *, cpl_image *,
cpl_table *response,
cpl_table *ext_table, double startwave,
double dispersion, double gain,
double exptime, double airmass);
int mos_check_polarisation(cpl_image *q_image, cpl_image *q_error,
cpl_image *u_image, cpl_image *u_error,
double startwave, double dispersion,
double band, cpl_table *pol_sta,
double ra, double dec, char *filter,
int *polarisation,
double *p_offset, double *p_error,
double *a_offset, double *a_error);
int mos_compute_offset(cpl_table *, cpl_table *, double *);
cpl_error_code mos_image_shift(cpl_image *, double dx, double dy);
int mos_slit_closest_to_center(cpl_table *slits, int nx, int ny);
cpl_error_code mos_extract_flux(cpl_image *, cpl_table *, double, double,
int, double, double *, double *);
cpl_error_code mos_extract_flux_mapped(cpl_image *, cpl_table *,
double, double,
double lambda, double startwave,
double dispersion, int dx, double gain,
double *o_flux, double *o_err);
int mos_median_in_slit(cpl_table *, cpl_table *, int slit,
char *label, double *mvalue);
cpl_image *mos_image_filter_median(cpl_image *image, int nx, int ny);
cpl_error_code mos_slit_wavemap(cpl_image *wavemap, int slit, cpl_table *slits,
cpl_table *polytraces, double reference,
double blue, double red, double dispersion);
CPL_END_DECLS
#endif /* MOSES_H */
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