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/* $Id: xsh_model_anneal.c,v 1.20 2011-12-02 14:15:28 amodigli Exp $
*
* This file is part of the ESO X-shooter Pipeline
* Copyright (C) 2006 European Southern Observatory
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*/
/*
* $Author: amodigli $
* $Date: 2011-12-02 14:15:28 $
* $Revision: 1.20 $
* $Name: not supported by cvs2svn $
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
/*-----------------------------------------------------------------------------
Includes
-----------------------------------------------------------------------------*/
#include <cpl.h>
#include <xsh_msg.h>
#include <xsh_error.h>
#include "xsh_model_anneal.h"
#include "xsh_model_kernel.h"
#include "xsh_model_arm_constants.h"
#include "xsh_model_io.h"
#include "xsh_model_metric.h"
#include "xsh_model_sa.h"
#define MAXIT 25000
/*----------------------------------------------------------------------------*/
/**
* @defgroup xsh_model_anneal Anneal computation function
*/
/*----------------------------------------------------------------------------*/
/**@{*/
/*----------------------------------------------------------------------------*/
/**
@brief The actual anneal computation takes place here
@param xsh_config_file model cfg filename
@param xsh_config_tag model cfg pro catg
@param meas_coord_file masure coordination file
@return the new configuration table or NULL in error case
*/
/*----------------------------------------------------------------------------*/
cpl_table * xsh_model_anneal_reduce(
const char * xsh_config_file,
const char * xsh_config_tag,
const char * meas_coord_file)
{
cpl_table * conf_tab = NULL;
int ii;
int morder,sizearraywavelengths, DS_size,adim;
int morder_it;
int morder_min, morder_max;
struct xs_3 xs_model, *p_xs_3;
ann_all_par all_par[300], *p_all_par;
double abest[300];
double amin[300];
double amax[300];
int aname[300];
DOUBLE flux_tot;
int tot;
coord *msp_coord = NULL;
DOUBLE ** ref_ind = NULL;
DOUBLE *p_wlarray = NULL;
p_xs_3=&xs_model;
p_all_par=&all_par[0];
sizearraywavelengths=countlines(meas_coord_file);
XSH_CALLOC( msp_coord, coord, sizearraywavelengths+5);
xsh_msg("%d \n",sizearraywavelengths);
/*wavelength = (DOUBLE *)cpl_malloc(sizearraywavelengths*sizeof(DOUBLE));*/
xsh_msg("tag=%s",xsh_config_tag);
adim=xsh_model_readfits(abest,
amin,
amax,
aname,
xsh_config_file,
xsh_config_tag,
p_xs_3,
p_all_par);
xsh_msg("arm %d \n",p_xs_3->arm);
ref_ind=xsh_alloc2Darray(8,7);
if (p_xs_3->arm==0) {
p_xs_3->BSIZE=UVB_BSIZE;
p_xs_3->ASIZE=UVB_ASIZE;
p_xs_3->chipxpix=UVB_chipxpix;
p_xs_3->chipypix=UVB_chipypix;
xsh_ref_ind_read(0,ref_ind,p_xs_3->temper);
morder=UVB_morder;
morder_it=5;
morder_min=UVB_morder_min;
morder_max=UVB_morder_max;
}
else if (p_xs_3->arm==1) {
p_xs_3->BSIZE=VIS_BSIZE;
p_xs_3->ASIZE=VIS_ASIZE;
p_xs_3->chipypix=VIS_chipypix;
p_xs_3->chipxpix=VIS_chipxpix;
xsh_ref_ind_read(1,ref_ind,p_xs_3->temper);
morder=VIS_morder;
morder_it=7;
morder_min=VIS_morder_min;
morder_max=VIS_morder_max;
}
else if (p_xs_3->arm==2) {
p_xs_3->ASIZE=NIR_ASIZE;
p_xs_3->BSIZE=NIR_BSIZE;
p_xs_3->chipxpix=NIR_chipxpix;
p_xs_3->chipypix=NIR_chipypix;
xsh_ref_ind_read(2,ref_ind,p_xs_3->t_ir_p2);
morder=NIR_morder;
morder_it=8;
morder_min=NIR_morder_min;
morder_max=NIR_morder_max;
}
else {
printf("Arm not set. \n");
return NULL;
}
xsh_showmatrix(p_xs_3->e_slit);
/*We now need to update several matrices (that were set in the
xsh_3_init routine outside of the current loop) for this prism angle */
xsh_3_init(p_xs_3);
/* Size of the data structure is simply the length of the coords file, since
wavelengths matched in more than one order are lister each time (unlike
the x-dispersion for stisanneal)*/
DS_size = sizearraywavelengths;
/* now allocate memory for the data structure*/
p_wlarray=xsh_alloc1Darray(DS_size);
get_meas_coordinates(sizearraywavelengths, msp_coord,(char*)meas_coord_file);
flux_tot=0.0;
tot=0;
/* get total flux */
for(ii=0;ii<sizearraywavelengths;ii++) {
p_wlarray[ii]=msp_coord[ii].wave*1e-6;
/* below is a quick hack to allow an offset in the
co-ordinates eg 0.5 for pixel centres*/
/* if (p_xs_3->arm==0) { */
/* msp_coord[ii].x=2144.0-msp_coord[ii].x-0.0; */
/* msp_coord[ii].y=3000.0-msp_coord[ii].y-0.0; */
/* } */
flux_tot+=msp_coord[ii].flux;
tot+=1;
}
/* Normalise fluxes */
for(ii=0;ii<sizearraywavelengths;ii++) {
msp_coord[ii].flux=msp_coord[ii].flux*(double)(tot)/flux_tot;
}
#ifdef DEBUG
printf ("Before anneal: \n");
for (ii=0;ii<adim;ii++) {
printf("%d %s %lf \n", aname[ii], (p_all_par+aname[ii])->name, abest[ii]);
}
xsh_showmatrix(p_xs_3->e_slit);
/*Call the model kernel with the initial values*/
int jj=0;
for (jj=0;jj<DS_size;jj++) {
p_xs_3->es_y_tot=p_xs_3->es_y+p_xs_3->slit[msp_coord[jj].slit_pos]*p_xs_3->slit_scale;
morder=msp_coord[jj].order;
xsh_3_init(p_xs_3);
xsh_3_eval(p_wlarray[jj],morder,ref_ind,p_xs_3);
xsh_3_detpix(p_xs_3);
printf("check %d %lf %lf %d %d %lf %lf %lf %lf %d\n",
jj,p_wlarray[jj],p_xs_3->es_y_tot,p_xs_3->chippix[0],
msp_coord[jj].arm,p_xs_3->xpospix,p_xs_3->ypospix,
msp_coord[jj].x-p_xs_3->xpospix,msp_coord[jj].y-p_xs_3->ypospix,
msp_coord[jj].order);
}
#endif
/*Call the main anneal algorithm in crires_model_metric.c*/
conf_tab = xsh_model_anneal_comp( p_all_par,
adim,
abest,
amin,
amax,
aname,
p_xs_3,
DS_size,
msp_coord,
p_wlarray,
ref_ind,
MAXIT);
cleanup:
xsh_free2Darray(ref_ind,8);
cpl_free(p_wlarray);
return conf_tab ;
}
/**@}*/
/*The number of measured co-ordinates must equal the number of wavelengths in meas_coord_file (and they should also correspond)*/
void get_meas_coordinates(int sizearraywavelengths,
coord* meas_coord,
char* datname)
{
int feat_cnt=0;
FILE* measfile;
measfile=fopen(datname,"r");
/* FILE * matchfile=fopen("match.dat","r");*/
if(measfile ==NULL ){
printf("Cannot open the measured coords file\n");
abort();}
while(fscanf(measfile, "%64d %64lf %64lf %64d %64lf %64d %64lf %64d\n",
&meas_coord[feat_cnt].counter,
&meas_coord[feat_cnt].y,
&meas_coord[feat_cnt].x,
&meas_coord[feat_cnt].arm,
&meas_coord[feat_cnt].flux,
&meas_coord[feat_cnt].slit_pos,
&meas_coord[feat_cnt].wave,
&meas_coord[feat_cnt].order) != EOF ){
feat_cnt+=1;
}
fclose(measfile);
if (feat_cnt != sizearraywavelengths) {
printf("Number of spectral features is not equal to the number of wavelengths and slit posn's supplied! \n %d != %d \n",feat_cnt, sizearraywavelengths);
abort();}
}
/*count lines of the calibration files in order to dimension the array's size.*/
int countlines (const char * filename)
{
/* count lines ignore Comments (lines start with a %)*/
char oneline[200];
char *c;
char firstchar[]="";
char comment[]="%";
FILE * myfile;
int linecounter=0;
if((myfile=fopen((char*)filename,"r"))==NULL){
printf("Cannot open file %s for reading.\n",filename);
abort();
}
do
{
c = fgets(oneline, 200, myfile); /* get one line from the file */
if (c != NULL)
{
strncpy(firstchar,oneline,1);
if(strncmp(firstchar,comment,1))
/*if is not a comment increment linecounter*/
linecounter++;
}
}
while (c != NULL); /* repeat until NULL */
fclose(myfile);
return linecounter;
}
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