File: start.mol2

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@<TRIPOS>MOLECULE
1g9v_allatom_refine_001.pdb_4
47 48 1 0 0
SMALL
NO_CHARGES


@<TRIPOS>ATOM
      1 C1          4.5699   -2.3267    0.3187 C.ar      1 UNK1       -0.1045
      2 C2          2.8681   -3.8029   -0.5539 C.ar      1 UNK1       -0.1225
      3 C3          4.0948   -1.2980   -0.4948 C.ar      1 UNK1       -0.1819
      4 C4          2.3929   -2.7743   -1.3674 C.ar      1 UNK1       -0.1633
      5 C5          7.2926  -10.1074   -1.1740 C.ar      1 UNK1       -0.1688
      6 C6          5.3058   -9.2367   -0.1105 C.ar      1 UNK1       -0.1890
      7 C7          7.1381   -7.7553   -0.6444 C.ar      1 UNK1       -0.1669
      8 C8          3.9566   -3.5791    0.2891 C.ar      1 UNK1       -0.1689
      9 C9          6.0196  -10.3110   -0.6415 C.ar      1 UNK1       -0.0498
     10 C10         7.8519   -8.8296   -1.1755 C.ar      1 UNK1       -0.0561
     11 C11         5.8651   -7.9588   -0.1119 C.ar      1 UNK1        0.0889
     12 C12         3.0063   -1.5218   -1.3378 C.ar      1 UNK1        0.1780
     13 C13         5.5437   -5.5380    0.5059 C.2       1 UNK1        0.6694
     14 C14         2.8330   -1.7386   -4.1697 C.2       1 UNK1        0.9096
     15 C15         5.4218  -11.6773   -0.6399 C.3       1 UNK1       -0.0529
     16 C16         9.2130   -8.6121   -1.7450 C.3       1 UNK1       -0.0509
     17 C17         4.5977   -0.0767   -3.2804 C.3       1 UNK1       -0.1062
     18 C18         2.3929    0.7077   -4.1818 C.3       1 UNK1       -0.0746
     19 C19         4.4641   -4.6788    1.1592 C.3       1 UNK1       -0.0907
     20 C20         3.1182   -0.4087   -3.4364 C.3       1 UNK1        0.0286
     21 N1          5.1408   -6.8687    0.4268 N.am      1 UNK1       -0.4654
     22 O1          1.6145   -2.0384   -4.3165 O.co2     1 UNK1       -0.8195
     23 O2          6.6067   -5.0597    0.1234 O.2       1 UNK1       -0.6154
     24 O3          3.8578   -2.3791   -4.5451 O.co2     1 UNK1       -0.8300
     25 O4          2.5399   -0.5130   -2.1342 O.3       1 UNK1       -0.3385
     26 H1          5.4185   -2.1435    0.9723 H         1 UNK1        0.1204
     27 H2          2.3840   -4.7757   -0.5836 H         1 UNK1        0.1154
     28 H3          4.5767   -0.3243   -0.4671 H         1 UNK1        0.1351
     29 H4          1.5445   -2.9548   -2.0215 H         1 UNK1        0.2090
     30 H5          7.8493  -10.9449   -1.5882 H         1 UNK1        0.1239
     31 H6          4.3132   -9.3976    0.3045 H         1 UNK1        0.1370
     32 H7          7.5761   -6.7595   -0.6469 H         1 UNK1        0.1722
     33 H8          5.6838  -12.2077    0.2838 H         1 UNK1        0.0420
     34 H9          4.3277  -11.6337   -0.7176 H         1 UNK1        0.0494
     35 H10         5.7775  -12.2688   -1.4937 H         1 UNK1        0.0351
     36 H11         9.1464   -8.3757   -2.8141 H         1 UNK1        0.0430
     37 H12         9.7301   -7.7872   -1.2379 H         1 UNK1        0.0438
     38 H13         9.8425   -9.5034   -1.6243 H         1 UNK1        0.0332
     39 H14         4.7314    0.8754   -2.7541 H         1 UNK1        0.0114
     40 H15         5.1045   -0.0120   -4.2489 H         1 UNK1        0.0612
     41 H16         5.1087   -0.8371   -2.6784 H         1 UNK1        0.0314
     42 H17         2.5571    1.6824   -3.7077 H         1 UNK1        0.0050
     43 H18         1.3136    0.5273   -4.2258 H         1 UNK1        0.0400
     44 H19         2.7713    0.8010   -5.2063 H         1 UNK1        0.0607
     45 H20         4.8766   -4.2675    2.0954 H         1 UNK1        0.0795
     46 H21         3.6356   -5.3411    1.4601 H         1 UNK1        0.0624
     47 H22         4.2181   -7.0822    0.7998 H         1 UNK1        0.3301
@<TRIPOS>BOND
     1    1   26 1
     2    1    8 ar
     3    8   19 1
     4   19   46 1
     5   19   45 1
     6   13   19 1
     7   13   23 2
     8   13   21 am
     9   21   47 1
    10   11   21 1
    11    7   11 ar
    12    7   32 1
    13    7   10 ar
    14   10   16 1
    15   16   38 1
    16   16   37 1
    17   16   36 1
    18    5   10 ar
    19    5   30 1
    20    5    9 ar
    21    9   15 1
    22   15   33 1
    23   15   35 1
    24   15   34 1
    25    6    9 ar
    26    6   31 1
    27    6   11 ar
    28    2    8 ar
    29    2   27 1
    30    2    4 ar
    31    4   29 1
    32    4   12 ar
    33   12   25 1
    34   20   25 1
    35   17   20 1
    36   17   41 1
    37   17   40 1
    38   17   39 1
    39   14   20 1
    40   14   24 2
    41   14   22 2
    42   18   20 1
    43   18   44 1
    44   18   43 1
    45   18   42 1
    46    3   12 ar
    47    3   28 1
    48    1    3 ar
@<TRIPOS>SUBSTRUCTURE
     1 UNK1        1 RESIDUE           4 A     UNK     0 ROOT