File: cyclic.mol2

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@<TRIPOS>MOLECULE
Cpptraj generated mol2 file.
  121   125     7     0     0
SMALL
USER_CHARGES


@<TRIPOS>ATOM
      1 N           7.6296   11.0443   -2.2747 N          1 ILE     -0.415700
      2 H           8.3532   10.5644   -1.7660 H          1 ILE      0.271900
      3 CA          6.3552   10.3364   -2.5463 CX         1 ILE     -0.059700
      4 HA          6.0223   10.6610   -3.5335 H1         1 ILE      0.086900
      5 CB          5.2624   10.7973   -1.5406 3C         1 ILE      0.130300
      6 HB          5.2511   11.8857   -1.6125 HC         1 ILE      0.018700
      7 CG2         3.8471   10.3777   -1.9716 CT         1 ILE     -0.320400
      8 HG21        3.7348    9.2937   -1.9438 HC         1 ILE      0.088200
      9 HG22        3.1116   10.8286   -1.3041 HC         1 ILE      0.088200
     10 HG23        3.6531   10.7264   -2.9867 HC         1 ILE      0.088200
     11 CG1         5.5616   10.5132   -0.0452 2C         1 ILE     -0.043000
     12 HG12        6.6367   10.5453    0.1289 HC         1 ILE      0.023600
     13 HG13        5.1255   11.3246    0.5396 HC         1 ILE      0.023600
     14 CD1         5.0117    9.2012    0.5375 CT         1 ILE     -0.066000
     15 HD11        5.3335    8.3445   -0.0492 HC         1 ILE      0.018600
     16 HD12        5.3744    9.0836    1.5590 HC         1 ILE      0.018600
     17 HD13        3.9221    9.2291    0.5608 HC         1 ILE      0.018600
     18 C           6.4392    8.7989   -2.6384 C          1 ILE      0.597300
     19 O           5.7453    8.2075   -3.4676 O          1 ILE     -0.567900
     20 N           7.2778    8.1414   -1.8209 N          2 ASN     -0.415700
     21 H           7.7662    8.6806   -1.1271 H          2 ASN      0.271900
     22 CA          7.3243    6.6700   -1.7088 CX         2 ASN      0.014300
     23 HA          6.2996    6.3102   -1.8296 H1         2 ASN      0.104800
     24 CB          8.1179    6.0952   -2.8994 2C         2 ASN     -0.204100
     25 HB2         7.5666    6.2743   -3.8220 HC         2 ASN      0.079700
     26 HB3         9.0632    6.6121   -2.9889 HC         2 ASN      0.079700
     27 CG          8.3759    4.5988   -2.7937 C          2 ASN      0.713000
     28 OD1         7.5393    3.7745   -3.1364 O          2 ASN     -0.593100
     29 ND2         9.5497    4.1983   -2.3584 N          2 ASN     -0.919100
     30 HD21        9.7310    3.2085   -2.3004 H          2 ASN      0.419600
     31 HD22       10.2418    4.8795   -2.0573 H          2 ASN      0.419600
     32 C           7.7744    6.0796   -0.3391 C          2 ASN      0.597300
     33 O           7.1369    5.1057    0.0761 O          2 ASN     -0.567900
     34 N           8.7899    6.5966    0.3996 N          3 PRO     -0.254800
     35 CD          9.1650    6.0084    1.6847 CT         3 PRO      0.019200
     36 HD2         9.2502    4.9227    1.6172 H1         3 PRO      0.039100
     37 HD3         8.4185    6.2760    2.4342 H1         3 PRO      0.039100
     38 CG         10.5137    6.6103    2.0682 CT         3 PRO      0.018900
     39 HG2        11.3206    6.0322    1.6152 HC         3 PRO      0.021300
     40 HG3        10.6388    6.6678    3.1500 HC         3 PRO      0.021300
     41 CB         10.4397    7.9925    1.4294 CT         3 PRO     -0.007000
     42 HB2        11.4318    8.4166    1.2659 HC         3 PRO      0.025300
     43 HB3         9.8484    8.6537    2.0656 HC         3 PRO      0.025300
     44 CA          9.6852    7.7306    0.1197 CX         3 PRO     -0.026600
     45 HA          9.1011    8.6230   -0.0936 H1         3 PRO      0.064100
     46 C          10.6721    7.4882   -1.0373 C          3 PRO      0.589600
     47 O          11.1153    6.3655   -1.2864 O          3 PRO     -0.574800
     48 N          10.9880    8.5709   -1.7495 N          4 TYR     -0.415700
     49 H          10.6443    9.4572   -1.4061 H          4 TYR      0.271900
     50 CA         11.9014    8.6828   -2.8993 CX         4 TYR     -0.001400
     51 HA         12.8623    8.2224   -2.6670 H1         4 TYR      0.087600
     52 CB         11.2561    7.9688   -4.1122 CT         4 TYR     -0.015200
     53 HB2        11.0573    6.9348   -3.8376 HC         4 TYR      0.029500
     54 HB3        10.2986    8.4436   -4.3341 HC         4 TYR      0.029500
     55 CG         12.0949    7.8980   -5.3776 CA         4 TYR     -0.001100
     56 CD1        11.6431    8.5165   -6.5613 CA         4 TYR     -0.190600
     57 HD1        10.6886    9.0297   -6.5767 HA         4 TYR      0.169900
     58 CE1        12.4340    8.4794   -7.7264 CA         4 TYR     -0.234100
     59 HE1        12.0869    8.9575   -8.6320 HA         4 TYR      0.165600
     60 CZ         13.6819    7.8172   -7.7127 C          4 TYR      0.322600
     61 OH         14.4556    7.7754   -8.8325 OH         4 TYR     -0.557900
     62 HH         14.0377    8.2260   -9.5869 HO         4 TYR      0.399200
     63 CE2        14.1292    7.1931   -6.5280 CA         4 TYR     -0.234100
     64 HE2        15.0833    6.6848   -6.5228 HA         4 TYR      0.165600
     65 CD2        13.3362    7.2319   -5.3646 CA         4 TYR     -0.190600
     66 HD2        13.6837    6.7474   -4.4601 HA         4 TYR      0.169900
     67 C          12.1132   10.2001   -3.1422 C          4 TYR      0.597300
     68 O          11.8621   11.0125   -2.2459 O          4 TYR     -0.567900
     69 N          12.5360   10.6086   -4.3411 N          5 LEU     -0.415700
     70 H          12.7443    9.8965   -5.0275 H          5 LEU      0.271900
     71 CA         12.4984   11.9971   -4.8136 CX         5 LEU     -0.051800
     72 HA         13.1365   12.5897   -4.1562 H1         5 LEU      0.092200
     73 CB         13.1037   12.0126   -6.2356 2C         5 LEU     -0.110200
     74 HB2        14.1000   11.5684   -6.1936 HC         5 LEU      0.045700
     75 HB3        12.4854   11.3719   -6.8661 HC         5 LEU      0.045700
     76 CG         13.2134   13.3839   -6.9304 3C         5 LEU      0.353100
     77 HG         12.2320   13.8522   -6.9840 HC         5 LEU     -0.036100
     78 CD1        14.1815   14.3217   -6.2045 CT         5 LEU     -0.412100
     79 HD11       15.1728   13.8694   -6.1552 HC         5 LEU      0.100000
     80 HD12       14.2480   15.2678   -6.7428 HC         5 LEU      0.100000
     81 HD13       13.8341   14.5268   -5.1940 HC         5 LEU      0.100000
     82 CD2        13.7224   13.1972   -8.3600 CT         5 LEU     -0.412100
     83 HD21       13.0343   12.5584   -8.9142 HC         5 LEU      0.100000
     84 HD22       13.7794   14.1640   -8.8608 HC         5 LEU      0.100000
     85 HD23       14.7110   12.7369   -8.3509 HC         5 LEU      0.100000
     86 C          11.0687   12.5951   -4.7625 C          5 LEU      0.597300
     87 O          10.0771   11.8730   -4.8897 O          5 LEU     -0.567900
     88 N          10.9885   13.9220   -4.6076 N          6 PHE     -0.415700
     89 H          11.8707   14.4007   -4.4997 H          6 PHE      0.271900
     90 CA          9.7987   14.7949   -4.5735 CX         6 PHE     -0.002400
     91 HA         10.2897   15.7396   -4.8131 H1         6 PHE      0.097800
     92 CB          8.9091   14.6847   -5.8348 CT         6 PHE     -0.034300
     93 HB2         9.4856   15.0208   -6.6982 HC         6 PHE      0.029500
     94 HB3         8.6826   13.6343   -6.0078 HC         6 PHE      0.029500
     95 CG          7.5815   15.4274   -5.8214 CA         6 PHE      0.011800
     96 CD1         6.3624   14.7251   -5.7439 CA         6 PHE     -0.125600
     97 HD1         6.3615   13.6464   -5.6689 HA         6 PHE      0.133000
     98 CE1         5.1394   15.4203   -5.7651 CA         6 PHE     -0.170400
     99 HE1         4.2066   14.8753   -5.6978 HA         6 PHE      0.143000
    100 CZ          5.1278   16.8217   -5.8773 CA         6 PHE     -0.107200
    101 HZ          4.1868   17.3567   -5.8941 HA         6 PHE      0.129700
    102 CE2         6.3405   17.5264   -5.9748 CA         6 PHE     -0.170400
    103 HE2         6.3334   18.6049   -6.0677 HA         6 PHE      0.143000
    104 CD2         7.5631   16.8304   -5.9531 CA         6 PHE     -0.125600
    105 HD2         8.4928   17.3776   -6.0319 HA         6 PHE      0.133000
    106 C           9.1689   15.2629   -3.2292 C          6 PHE      0.597300
    107 O           8.8500   16.4558   -3.1443 O          6 PHE     -0.567900
    108 N           9.1037   14.4783   -2.1260 N          7 PRO     -0.254800
    109 CD          9.0440   15.0592   -0.7904 CT         7 PRO      0.019200
    110 HD2         8.0025   15.1877   -0.4914 H1         7 PRO      0.039100
    111 HD3         9.5710   16.0131   -0.7364 H1         7 PRO      0.039100
    112 CG          9.7275   14.0431    0.1123 CT         7 PRO      0.018900
    113 HG2        10.8107   14.1080   -0.0037 HC         7 PRO      0.021300
    114 HG3         9.4348   14.1619    1.1561 HC         7 PRO      0.021300
    115 CB          9.2129   12.7383   -0.4821 CT         7 PRO     -0.007000
    116 HB2         8.2267   12.5362   -0.0593 HC         7 PRO      0.025300
    117 HB3         9.8905   11.9112   -0.2668 HC         7 PRO      0.025300
    118 CA          9.1076   13.0109   -1.9971 CX         7 PRO     -0.026600
    119 HA          9.9928   12.6055   -2.4686 H1         7 PRO      0.064100
    120 C           7.8456   12.3360   -2.5796 C          7 PRO      0.589600
    121 O           7.0342   12.9884   -3.2375 O          7 PRO     -0.574800
@<TRIPOS>BOND
    1    18    19 1
    2    18    20 1
    3    11    14 1
    4     5     7 1
    5     5    11 1
    6     3     5 1
    7     3    18 1
    8     1     3 1
    9     1   120 1
   10    32    33 1
   11    32    34 1
   12    27    28 1
   13    27    29 1
   14    24    27 1
   15    22    24 1
   16    22    32 1
   17    20    22 1
   18    46    47 1
   19    46    48 1
   20    44    46 1
   21    41    44 1
   22    38    41 1
   23    35    38 1
   24    34    35 1
   25    34    44 1
   26    67    68 1
   27    67    69 1
   28    63    65 1
   29    60    61 1
   30    60    63 1
   31    58    60 1
   32    56    58 1
   33    55    56 1
   34    55    65 1
   35    52    55 1
   36    50    52 1
   37    50    67 1
   38    48    50 1
   39    86    87 1
   40    86    88 1
   41    76    78 1
   42    76    82 1
   43    73    76 1
   44    71    73 1
   45    71    86 1
   46    69    71 1
   47   106   107 1
   48   106   108 1
   49   102   104 1
   50   100   102 1
   51    98   100 1
   52    96    98 1
   53    95    96 1
   54    95   104 1
   55    92    95 1
   56    90    92 1
   57    90   106 1
   58    88    90 1
   59   120   121 1
   60   118   120 1
   61   115   118 1
   62   112   115 1
   63   109   112 1
   64   108   109 1
   65   108   118 1
   66    14    15 1
   67    14    16 1
   68    14    17 1
   69    11    12 1
   70    11    13 1
   71     7     8 1
   72     7     9 1
   73     7    10 1
   74     5     6 1
   75     3     4 1
   76     1     2 1
   77    29    30 1
   78    29    31 1
   79    24    25 1
   80    24    26 1
   81    22    23 1
   82    20    21 1
   83    44    45 1
   84    41    42 1
   85    41    43 1
   86    38    39 1
   87    38    40 1
   88    35    36 1
   89    35    37 1
   90    65    66 1
   91    63    64 1
   92    61    62 1
   93    58    59 1
   94    56    57 1
   95    52    53 1
   96    52    54 1
   97    50    51 1
   98    48    49 1
   99    82    83 1
  100    82    84 1
  101    82    85 1
  102    78    79 1
  103    78    80 1
  104    78    81 1
  105    76    77 1
  106    73    74 1
  107    73    75 1
  108    71    72 1
  109    69    70 1
  110   104   105 1
  111   102   103 1
  112   100   101 1
  113    98    99 1
  114    96    97 1
  115    92    93 1
  116    92    94 1
  117    90    91 1
  118    88    89 1
  119   118   119 1
  120   115   116 1
  121   115   117 1
  122   112   113 1
  123   112   114 1
  124   109   110 1
  125   109   111 1
@<TRIPOS>SUBSTRUCTURE
      1 ILE               1 ****               0 ****  **** 
      2 ASN              20 ****               0 ****  **** 
      3 PRO              34 ****               0 ****  **** 
      4 TYR              48 ****               0 ****  **** 
      5 LEU              69 ****               0 ****  **** 
      6 PHE              88 ****               0 ****  **** 
      7 PRO             108 ****               0 ****  ****