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// crm_fast_substring_compression.c - fast substring compression tools
// Copyright 2001-2009 William S. Yerazunis.
// This file is under GPLv3, as described in COPYING.
// include some standard files
#include "crm114_sysincludes.h"
// include any local crm114 configuration file
#include "crm114_config.h"
// include the crm114 data structures file
#include "crm114_structs.h"
// and include the routine declarations file
#include "crm114.h"
// the globals used when we need a big buffer - allocated once, used
// wherever needed. These are sized to the same size as the data window.
extern char *tempbuf;
/////////////////////////////////////////////////////////////////
//
// Compression-match classification
//
// This classifier is based on the use of the Lempel-Ziv LZ77
// (published in 1977) algorithm for fast compression; more
// compression implies better match.
//
// The basic idea of LZ77 is to encode strings of N characters
// as a small doublet (Nstart, Nlen), where Nstart and Nlen are
// backward references into previously seen text. If there's
// no previous correct back-reference string, then don't compress
// those characters.
//
// Thus, LZ77 is a form of _universal_ compressor; it starts out knowing
// nothing of what it's to compress, and develops compression
// tables "on the fly".
//
// It is well known that one way of doing text matching is to
// compare relative compressibility - that is, given known
// texts K1 and K2, the unknown text U is in the same class as K1
// iff the LZ77 compression of K1|U is smaller (fewer bytes) than
// the LZ77 compression of K2|U . (remember you need to subtract
// the compressed lengths of K1 and K2 respectively).
//
// There are several ways to generate LZ compression fast; one
// way is by forward pointers on N-letter prefixes. Another
// way is to decide on a maximum string depth and build transfer
// tables.
//
// One problem with LZ77 is that finding the best possible compression
// is NP-hard. Consider this example:
//
// ABCDEFGHI DEFGHIJLMN BCDEFGHIJ JKLMNOPQ ABCDEFGHIJKLMNOP
//
// Is it better to code the final part with the A-J segment
// followed by the J-P segment, or with a literal ABC, then D-N,
// then the literal string OP? Without doing the actual math, you
// can't easily decide which is the better compression. In the
// worst case, the problem becomes the "knapsack" problem and
// is thus NP-hard.
//
// To avoid this, we take the following heuristic for our first
// coding attempt:
//
// Look for the longest match of characters that
// match the unknown at this point and use that.
//
// In the worst case, this algorithm will traverse the entire
// known text for each possible starting character, and possibly
// do a local search if that starting character matches the
// character in the unknown text. Thus, the time to run is
// bounded by |U| * |K|.
//
// Depending on the degree of overlap between strings, this
// heuristic will be at best no worse than half as good as the
// best possible heuristic, and (handwave not-proven) not worse
// than one quarter as good as the best possible heuristic.
//
// As a speedup, we can use a prefix lookforward based on N
// (the number of characters we reqire to match before switching
// from literal characters to start/length ranges). Each character
// also carries an index, saying "for the N-character lookforward
// prefix I am at the start of, you can find another example of this
// at the following index."
//
// For example, the string "ABC DEF ABC FGH ABC XYZ" would have
// these entries inserted sequentially into the lookforward table:
//
// ABC --> 0
// BC --> 1
// C D --> 2
// DE --> 3
// DEF --> 4
// EF --> 5
// F A --> 6
// AB --> 7
//
// At this point, note that "ABC" recurs again. Since we want to
// retain both references to "ABC" strings, we place the index of
// the second ABC (== 8) into the "next occurrence" tag of the
// first "ABC". (or, more efficiently, set the second ABC to point
// to the first ABC, and then have the lookforward table point to the
// second ABC (thus, the chain of ABCs is actually in the reverse order
// of their encounters).
//
// For prefix lengths of 1, 2, and 3, the easiest method is to
// direct-map the prefixes into a table. The table lengths would
// be 256, 65536, and 16 megawords (64 megabytes). The first two are
// eminently tractable; the third marginally so. The situation
// can be improved by looking only at the low order six bits of
// the characters as addresses into the direct map table. For normal
// ASCII, this means that the control characters are mapped over the
// capital letters, and the digits and punctuation are mapped over
// lowercase letters, and uses up only 16 megabytes for the table entries.
//
// Of course, a direct-mapped, 1:1 table is not the only possible
// table. It is also possible to create a hash table with overflow
// chains. For example, an initial two-character table (256Kbytes) yields
// the start of a linear-search chain; this chain points to a linked list of
// all of the third characters yet encountered.
//
// Here's some empirical data to get an idea of the size of the
// table actually required:
//
// for SA's hard_ham
// lines words three-byte sequences
// 114K 464K 121K
// 50K 210K 61K
// 25K 100K 47K
// 10K 47K 31K
// 5K 24K 21K
//
// For SA's easy_ham_2:
// lines words three-byte sequences
// 134K 675K 97K
// 25K 130K 28K
//
// For SA's spam_2:
// lines words three-byte sequences
// 197K 832K 211K
// 100K 435K 116K
//
// So, it looks like in the long term (and in English) there is
// an expectation of roughly as many 3-byte sequences as there are
// lines of text, probably going asymptotic at around
// a quarter of a million unique 3-byte sequences. Note that
// the real maximum is 2^24 or about 16 million three-byte
// sequences; however some of them would never occur except in
// binary encodings.
//
//
// ----- Embedded Limited-Length Markov Table Option -----
//
// Another method of accomplishing this (suitable for N of 3 and larger)
// is to use transfer tables allocated only on an as-needed basis,
// and to store the text in the tables directly (thus forming a sort of
// Markov chain of successive characters in memory).
//
// The root table contains pointers to the inital occurrence in the known
// text of all 256 possible first bytes; each subsequent byte then
// allocates another transfer table up to some predetermined limit on
// length.
//
// A disadvantage of this method is that it uses up more memory for
// storage than the index chaining method; further it must (by necessity)
// "cut off" at some depth thereby limiting the longest string that
// we want to allocate another table for. In the worst case, this
// system generates a doubly diagonal tree with |K|^2 / 4 tables.
// On the other hand, if there is a cutoff length L beyond which we
// don't expand the tables, then only the tables that are needed get
// allocated. As a nice side effect, the example text becomes less
// trivial to extract (although it's there, you have to write a
// program to extract it rather than just using "strings", unlike the
// bit entropy classifier where a well-populated array contains a lot
// of uncertainty and it's very difficult to even get a single
// byte unambiguously.
//
// Some empirical data on this method:
//
// N = 10
// Text length (bytes) Tables allocated
// 1211 7198
// 69K 232K
// 96K 411K
// 204K 791K
//
// N=5
// Text length (bytes) Tables allocated
// 1210 2368
// 42K 47K
// 87K 79K
// 183K 114K
// 386K 177K
// 841K 245K
// 1800K 342K
// 3566K 488K
// 6070K 954K
// 8806K 1220K
//
// N=4
// Text length (bytes) Tables allocated
// 87K 40K
// 183K 59K
// 338K 89K
// 840K 121K
// 1800K 167K
// 3568K 233K
// 6070K 438K
//
// N=3
// Text length (bytes) Tables allocated
// 87K 14K
// 183K 22K
// 386K 31K
// 840K 42K
// 1800K 58K
// 3568K 78K
// 6070K 132K
//
//
// Let's play with the numbers a little bit. Note that
// the 95 printable ASCII characters could have a theoretical
// maximum of 857K sequences, and the full 128-character ASCII
// (low bit off) is 2.09 mega-sequences. If we casefold A-Z onto
// a-z and all control characters to "space", then the resulting
// 69 characters is only 328K possible unique sequences.
//
// A simpler method is to fold 0x7F-0x8F down onto 0x00-0x7F, and
// then 0x00-0x3F onto 0x40-0x7F (yielding nothing but printable
// characters- however, this does not preserve whitespace in any sense).
// When folded this way, the SA hard_ham corpus (6 mbytes, 454 words, 114
// K lines) yields 89,715 unique triplets.
//
// Of course, for other languages, the statistical asymptote is
// probably present, but casefolding in a non-Roman font is probably
// going to give us weak results.
//
// --- Other Considerations ---
//
// Because it's unpleasant and CPU-consuming to read and write
// non-binary-format statistics files (memory mapping is far
// faster) it's slightly preferable to have statistics files
// that don't have internal structures that change sizes (appending is
// more pleasant than rewriting with new offsets). Secondarily,
// a lot of users are much more comfortable with the knowledge
// that their statistics files won't grow without bound. Therefore,
// fixed-size structures are often preferred.
//
//
// --- The text storage ---
//
// In all but the direct-mapped table method, the text itself needs
// to be stored because the indexing method only says where to look
// for the first copy of any particular string head, not where all
// of the copies are. Thus, each byte of the text needs an index
// (usually four bytes) of "next match" information. This index
// points to the start of the next string that starts with the
// current N letters.
//
// Note that it's not necessary for the string to be unique; the
// next match chains can contain more than one prefix. As long
// as the final matching code knows that the first N bytes need
// to be checked, there's no requirement that chains cannot be
// shared among multiple N-byte prefixes. Indeed, in the limit,
// a simple sequential search can be emulated by a shared-chain
// system with just ONE chain (each byte's "try next" pointer
// points to the next byte in line). These nonunique "try next"
// chains may be a good way to keep the initial hash table
// manageabley small. However, how to efficiently do this
// "in line" is unclear (the goal of in-line is to hide the
// known text so that "strings" can't trivially extract it;
// the obvious solution is to have two data structures (one by
// bytes, one by uint32's, but the byte structure is then easily
// perusable).
//
// Another method would be to have the initial table point not
// to text directly, but to a lookforward chain. Within the chain,
// cells are allocated only when the offset backward exceeds the
// offset range allowed by the in-line offset size. For one-byte
// text and three-byte offsets, this can only happen if the text
// grows beyond 16 megabytes of characters (64 megabyte footprint)
//
// --- Hash Tables Revisited ---
//
// Another method is to have multiple hash entries for every string
// starting point. For example, we might hash "ABC DEF ABC", "ABC DEF",
// and "ABC" and put each of these into the hash table.
//
// We might even consider that we can _discard_ the original texts
// if our hash space is large enough that accidental clashes are
// sufficiently rare. For example, with a 64-bit hash, the risk of
// any two particular strings colliding is 1E-19, and the risk of
// any collision whatsoever does not approach 50% with less than
// 1 E 9 strings in the storage.
//
// ------- Hashes and Hash Collisions -----
//
// To see how the hashes would collide with the CRM114 function strnhash,
// we ran the Spamassasin hard-ham corpus into three-byte groups, and
// then hashed the groups. Before hashing, there were 125,434 unique
// three-byte sequences; after hashing, there were 124,616 unique hashes;
// this is 818 hash collisions (a rate of 0.65%). This is a bit higher
// than predicted for truly randomly chosen inputs, but then again, the
// SA corpus has very few bytes with the high order bit set.
//
// ------ Opportunistic chain sharing -----
//
// (Note- this is NOT being built just yet; it's just an idea) - the
// big problem with 24-bit chain offsets is that it might not have
// enough "reach" for the less common trigrams; in the ideal case any
// matching substring is good enough and losing substrings is anathema.
// However, if we have a number of sparse chains that are at risk for
// not being reachable, we can merge those chains either together or
// onto another chain that's in no danger of running out of offsets.
//
// Note that it's not absolutely necessary for the two chains to be
// sorted together; as long as the chains are connected end-to-end,
// the result will still be effective.
//
// ----- Another way to deal with broken chains -----
//
// (also NOT being built yet; this is just another possibility)
// Another option: for systems where there are chains that are about
// to break because the text is exceeding 16 megabytes (the reach of
// a 24-bit offset), at the end of each sample document we can insert
// a "dummy" forwarding cell that merely serves to preserve continuity
// of any chain that might be otherwise broken because the N-letter prefix
// string has not occured even once in the preceding 16 megacells.
// (worst case analysis: there are 16 million three-byte prefixes, so
// if all but ONE prefix was actually ever seen in a 16-meg block, we'd
// have a minor edge-case problem for systems that did not do chain
// folding. With chain-folding down to 18 bits (256K different chains)
// we'd have no problem at all, even in the worst corner case.)
//
// However, we still need to insert these chain-fixers preemptively
// if we want to use "small" lookforward cells, because small (24-bit)
// cells don't have the reach to be able to index to the first occurrence
// of a chain that's never been seen in the first 16 megacharacters.
// This means that at roughly every 16-megacell boundary we would
// insert a forwarding dummy block (worst case size of 256K cells, on
// the average a lot fewer because some will actually get used in real
// chains.) That sounds like a reasonable tradeoff in size, but the
// bookkeeping to keep it all straight is goint to be painful to code and
// test rigorously.
//
//
// ------- Hashes-only storage ------
//
// In this method, we don't bother to store the actual text _at all_,
// but we do store chains of places where it occurred in the original
// text. In this case, we LEARN by sliding our window of strnhash(N)
// characters over the text. Each position generates a four-byte
// backward index (which may be NULL) to the most recent previous
// encounter of this prefix; this chain grows basically without limit.
//
// To CLASSIFY, we again slide our strnhash(N) window over the text;
// and for each offset position we gather the (possibly empty) list of
// places where that hash occurred. Because the indices are pre-sorted
// (always in descending order) it is O(n) in the length of the chains
// to find out any commonality because the chains can be traversed by the
// "two finger method" (same as in the hyperspace classifier). The
// result for any specific starting point is the list of N longest matches
// for the leading character position as seen so far. If we choose to
// "commit on N characters matching, then longest that starts in that
// chain" then the set of possible matches is the tree of indices and
// we want the longest branch.
//
// This is perhaps most easily done by an N-finger method where we keep
// a list of "fingers" to the jth, j+1, j+2... window positions; at each
// position j+k we merely insure that there is an unbroken path from j+0
// to j+k. (we could speed this up significantly by creating a lookaside
// list or array that contains ONLY the valid positions at j+k; moving the
// window to k+1 means only having to check through that array to find at
// least one member equal to the k+1 th window chain. In this case, the
// "two-finger" method suffices, and the calculation can be done "in place".
// When the path breaks (that is, no feasible matches remain), we take
// N + k - 1 to be the length of the matched substring and begin again
// at j = N + k + j.
//
// Another advantage of this method is that there is no stored text to
// recover directly; a brute-force attack, one byte at a time, will
// recover texts but not with absolute certainty as hash collisions
// might lead to unexpected forks in the chain.
//
// ------- Design Decision -----
//
// Unless something better comes up, if we just take the strnhash() of the
// N characters in the prefix, we will likely get a fairly reasonable
// distribution of hash values which we can then modulo down to whatever
// size table we're actually using. Thus, the size of the prefix and the
// size of the hah table are both freely variable in this design.
//
// We will use the "hash chains only" method to store the statistics
// information (thus providing at least moderate obscuration of the
// text, as well as moderately efficient storage.
//
// As a research extension, we will allow an arbitrary regex to determine
// the meaning of the character window; repeated regexing with k+1 starting
// positions yield what we will define as "legitimately adjacent window
// positions". We specifically define that we do not care if these are
// genuinely adjacent positions; we can define these things as we wish (and
// thereby become space-invariant, if we so choose.
//
// A question: should the regex define the next "character", or should
// it define the entire next window? The former allows more flexibility
// (and true invariance over charactersets); the latter is easier to
// implement and faster at runtime. Decision: implement as "defines the
// whole window". Then we use the count of subexpressions to define our
// window length; this would allow skipping arbitrary text - with all the
// programming power and danger of abuse that entails. Under this paradigm,
// the character regex is /(.)(.)(.)/ for an N=3 minimum chain.
//
// A quick test shows that strnhash on [a-zA-Z0-9 .,-] shows no
// duplications, nor any hash clashes when taken mod 256. Thus,
// using a Godel coding scheme (that is, where different offsets are
// each multiplied by a unique prime number and then those products
// are added together ) will *probably* give good hash results.
// Because we're moduloing (taking only the low order bits) the
// prime number "2" is a bit problematic and we may choose to skip it.
// Note that a superincreasing property is not useful here.
//
// Note that the entire SA corpus is only about 16 megabytes of
// text, so a full index set of the SA corpus would be on the
// order of 68 megabytes ( 4 megs of index, then another 64 megs
// of index chains)
//
// Note also that there is really no constraint that the chains start
// at the low indices and move higher. It is equally valid for the chains
// to start at the most recent indices and point lower in memory; this
// actually has some advantage in speed of indexing; each chain element
// points to the _previous_ element and we do the two-finger merge
// toward lower indices.
//
// Note also that there is no place the actual text or even the actual
// hashes of the text are stored. All hashes that map to the same place
// in the "seen at" table are deemed identical text (and no record is kept);
// similarly each cell of "saved text" is really only a pointer to the
// most recent previous location where something that mapped to the
// same hash table bucket was seen). Reconstruction of the prior text is
// hence marginal in confidence. This ambiguity can be increased by
// making the hash table smaller (and thus forcing unreconstructable
// collisions).
//
///////////////////////////////////////////////////////////
#ifdef NEED_PRIME_NUMBERS
///////////////////////////////////////////////////////////////
//
// Some prime numbers to use as weights.
//
// GROT GROT GROT note that we have a 1 here instead of a 2 as the
// first prime number! That's strictly an artifice to use all of the
// hash bits and is not an indication that we don't know that 2 is prime.
static unsigned long primes [ 260 ] = {
1, 3, 5, 7, 11, 13, 17, 19, 23, 29,
31, 37, 41, 43, 47, 53, 59, 61, 67, 71,
73, 79, 83, 89, 97, 101, 103, 107, 109, 113,
127, 131, 137, 139, 149, 151, 157, 163, 167, 173,
179, 181, 191, 193, 197, 199, 211, 223, 227, 229,
233, 239, 241, 251, 257, 263, 269, 271, 277, 281,
283, 293, 307, 311, 313, 317, 331, 337, 347, 349,
353, 359, 367, 373, 379, 383, 389, 397, 401, 409,
419, 421, 431, 433, 439, 443, 449, 457, 461, 463,
467, 479, 487, 491, 499, 503, 509, 521, 523, 541,
547, 557, 563, 569, 571, 577, 587, 593, 599, 601,
607, 613, 617, 619, 631, 641, 643, 647, 653, 659,
661, 673, 677, 683, 691, 701, 709, 719, 727, 733,
739, 743, 751, 757, 761, 769, 773, 787, 797, 809,
811, 821, 823, 827, 829, 839, 853, 857, 859, 863,
877, 881, 883, 887, 907, 911, 919, 929, 937, 941,
947, 953, 967, 971, 977, 983, 991, 997, 1009, 1013,
1019, 1021, 1031, 1033, 1039, 1049, 1051, 1061, 1063, 1069,
1087, 1091, 1093, 1097, 1103, 1109, 1117, 1123, 1129, 1151,
1153, 1163, 1171, 1181, 1187, 1193, 1201, 1213, 1217, 1223,
1229, 1231, 1237, 1249, 1259, 1277, 1279, 1283, 1289, 1291,
1297, 1301, 1303, 1307, 1319, 1321, 1327, 1361, 1367, 1373,
1381, 1399, 1409, 1423, 1427, 1429, 1433, 1439, 1447, 1451,
1453, 1459, 1471, 1481, 1483, 1487, 1489, 1493, 1499, 1511,
1523, 1531, 1543, 1549, 1553, 1559, 1567, 1571, 1579, 1583,
1597, 1601, 1607, 1609, 1613, 1619, 1621, 1627, 1637, 1657
} ;
#endif // NEED_PRIME_NUMBERS
////////////////////////////////////////////////////////////////
//
// Headers and self-identifying files are a good idea; we'll
// have it happen here.
//
typedef struct {
int prefix_hash_table_length; // # buckets in prefix hash table
} FSCM_HEADER;
// The prefix array maps a hash to the most recent occurrence of
// that hash in the text.
typedef struct {
unsigned int index;
} FSCM_PREFIX_TABLE_CELL;
typedef struct {
unsigned int next;
} FSCM_HASH_CHAIN_CELL;
////////////////////////////////////////////////////////////////////////
//
// How to learn in FSCM - two parts:
// 1) append our structures to the statistics file in
// the FSCM_CHAR_STRUCT format;
// 2) index the new structures; if no prior exists on the chain,
// let previous link be 0, otherwise it's the prior value in the
// hash table.
// 3) Nota bene: Originally this code grew the structures downward;
// this turned out to be a bad idea because some types of documents
// of interest contained long runs (1000+) of identical characters and
// the downward-growing structures took geometrically long
// periods of time to traverse repeatedly.
//
int crm_fast_substring_learn (CSL_CELL *csl, ARGPARSE_BLOCK *apb,
char *txtptr, long txtstart, long txtlen)
{
// learn the compression version of this input window as
// belonging to a particular type. Note that the word regex
// is ignored in this classifier.
//
// learn <flags> (classname)
//
long i, j;
char htext[MAX_PATTERN]; // the hash name buffer
char hashfilename [MAX_PATTERN]; // the hashfile name
FILE *hashf; // stream of the hashfile
unsigned long textoffset, textmaxoffset;
long hlen;
struct stat statbuf; // for statting the statistics file
long fscm_file_length = 0;
char *file_pointer;
STATISTICS_FILE_HEADER_STRUCT *file_header;
FSCM_PREFIX_TABLE_CELL *prefix_table; // the prefix indexing table,
unsigned long prefix_table_size;
FSCM_HASH_CHAIN_CELL *chains, *newchains; // the chain area
unsigned int newchainstart; // offset in cells of new chains
long sense;
long microgroom;
long unique;
long use_unigram_features;
long fev;
// Dummies used for the vector tokenizer
char ptext [MAX_PATTERN]; // regex pattern
long plen = 0;
int *ca = NULL; // Coefficient Array (we'll take the default)
long pipelen = 0;
long pipe_iters = 0;
long next_offset = 0;
// unk_hashes is tempbuf, but casting-aliased to FSCM chains
long unk_hashcount;
unsigned *unk_hashes;
unk_hashes = (unsigned *) tempbuf;
statbuf.st_size = 0;
fev = 0;
if (user_trace)
fprintf (stderr, "executing an FSCM LEARN\n");
// extract the hash file name
crm_get_pgm_arg ((char *)htext, MAX_PATTERN, apb->p1start, apb->p1len);
hlen = apb->p1len;
hlen = crm_nexpandvar ((char *)htext, hlen, MAX_PATTERN);
// set flags
sense = +1;
if (apb->sflags & CRM_NOCASE)
{
if (user_trace)
fprintf (stderr, "turning on case-insensitive match\n");
};
if (apb->sflags & CRM_REFUTE)
{
/////////////////////////////////////
// Take this out when we finally support refutation
////////////////////////////////////
fatalerror5 ("FSCM Refute is NOT SUPPORTED YET\n",
"If you want refutation, this is a good time to"
"learn to code.", CRM_ENGINE_HERE);
return (0);
sense = -sense;
if (user_trace)
fprintf (stderr, " refuting learning\n");
};
microgroom = 0;
if (apb->sflags & CRM_MICROGROOM)
{
microgroom = 1;
if (user_trace)
fprintf (stderr, " enabling microgrooming.\n");
};
unique = 0;
if (apb->sflags & CRM_UNIQUE)
{
unique = 1;
if (user_trace)
fprintf (stderr, " enabling uniqueifying features.\n");
};
use_unigram_features = 0;
if (apb->sflags & CRM_UNIGRAM)
{
use_unigram_features = 1;
if (user_trace)
fprintf (stderr, " using only unigram features.\n");
};
//
// grab the filename, and stat the file
// note that neither "stat", "fopen", nor "open" are
// fully 8-bit or wchar clean...
// i = 0;
// while (htext[i] < 0x021) i++;
// j = i;
// while (htext[j] >= 0x021) j++;
crm_nextword ( (char *) htext, hlen, 0, (long *) &i, (long *) &j);
// filename starts at i, ends at j. null terminate it.
htext[j] = '\000';
strcpy (hashfilename, &htext[i]);
if (user_trace)
fprintf (stderr, "Target file file %s\n", hashfilename);
textoffset = txtstart;
textmaxoffset = txtstart + txtlen;
{
long nosuchfile;
// Check to see if we need to create the file; if we need
// it, we create it here.
//
nosuchfile = stat ( hashfilename, &statbuf);
if (nosuchfile)
{
// Note that "my_header" is a local buffer.
STATISTICS_FILE_HEADER_STRUCT my_header;
FSCM_HEADER my_fscm_header;
if (user_trace)
fprintf (stderr, "No such statistics file %s; must create it.\n",
hashfilename);
// Set the size of the hash table.
fscm_file_length = sparse_spectrum_file_length;
if (fscm_file_length == 0)
fscm_file_length =
FSCM_DEFAULT_HASH_TABLE_SIZE; // choose well for speed/accuracy
/////////////////////////////////////////////////
// START OF STANDARD HEADER SETUP
memset(&my_header, '\0', sizeof(my_header));
memset(&my_fscm_header, '\0', sizeof(my_fscm_header));
strcpy ((char *)my_header.file_ident_string ,
"CRM114 Classdata FSCM V2 (hashed) ");
// offset of a member of my_header from the beginning of the structure
#define OFF_M(member) ((char *)&my_header.member - (char *)&my_header)
// header info, chunk 0 - the ident string
my_header.chunks[0].start = OFF_M(file_ident_string);
my_header.chunks[0].length = sizeof(my_header.file_ident_string);
my_header.chunks[0].tag = 1;
//
// header info chunk 1 - the header chunking info itself
my_header.chunks[1].start = OFF_M(chunks);
my_header.chunks[1].length = sizeof (my_header.chunks);
my_header.chunks[1].tag = 0;
//
// header info, chunk 2 - our specific header
my_header.chunks[2].start = sizeof(my_header);
my_header.chunks[2].length = sizeof(my_fscm_header);
my_header.chunks[2].tag = 2;
#undef OFF_M
// END OF STANDARD HEADER SETUP
//////////////////////////////////////////////////
// header info chunk 3 - the prefix hash table, fixed size
my_header.chunks[3].start = sizeof(STATISTICS_FILE_HEADER_STRUCT);
my_header.chunks[3].length =
fscm_file_length * sizeof(FSCM_PREFIX_TABLE_CELL);
my_header.chunks[3].tag = 3;
// ... and the length of that hash table will be, in cells:
my_fscm_header.prefix_hash_table_length = fscm_file_length;
//
// header info chunk 4 - the previous-seen pointers, growing.
my_header.chunks[4].start = my_header.chunks[3].start
+ my_header.chunks[3].length;
// Although the starting length is really zero, zero is a sentinel
// so we start at 1 bucket further in...
my_header.chunks[4].length = sizeof (FSCM_HASH_CHAIN_CELL);
my_header.chunks[4].tag = 4;
// Write out the initial file header..
hashf = fopen (hashfilename, "wb+");
dontcare = fwrite (&my_header,
sizeof (STATISTICS_FILE_HEADER_STRUCT),
1,
hashf);
dontcare = fwrite (&my_fscm_header,
sizeof(FSCM_HEADER),
1, hashf);
fclose (hashf);
};
};
/////////////////////////////////////////////////////////////
//
// Grow-the-file code.
//
// This happens whether or not this is a new file.
//
///////////////////////////////////////////////////////
if (sense > 0)
{
/////////////////
// THIS PATH TO LEARN A TEXT
// 1) Make room! Append enough unsigned int zeroes that
// we will have space for our hashes.
// 2) MMAP the file
// 3) actually write the hashes
// 4) adjust the initial-look table to point to those hashes;
// while modifying those hashes to point to the most recent
// previous hashes;
// 5) MSYNC the output file. As we already did a file system
// write it should not be necessary to do an mtime-fixup write.
//
/////////////////
// Write out the initial previous-seen hash table (all zeroes):
{
FSCM_PREFIX_TABLE_CELL my_zero_table;
my_zero_table.index = 0;
hashf = fopen (hashfilename, "ab+");
for (i = 0; i < fscm_file_length; i++)
dontcare = fwrite (&my_zero_table,
sizeof (FSCM_PREFIX_TABLE_CELL),
1,
hashf);
// ... and write a single 32-bit zero to cover index zero.
dontcare = fwrite (& (my_zero_table), sizeof (FSCM_PREFIX_TABLE_CELL), 1, hashf);
// All written; the file now exists with the right setup.
fclose (hashf);
};
// We need one 32-bit zero for each character in the to-be-learned
// text; we'll soon clobber the ones that are in previously
// seen chains to chain members (the others can stay as zeroes).
{
FSCM_HASH_CHAIN_CELL my_zero_chain;
// Now it's time to generate the actual string hashes.
// By default (no regex) it's a string kernel, length 6,
// but it can be any prefix one desires.
//
// Generate the hashes.
crm_vector_tokenize_selector
(apb, // the APB
txtptr, // intput string
txtstart, // starting offset
txtlen, // how many bytes
ptext, // parser regex
plen, // parser regex len
ca, // tokenizer coeff array
pipelen, // tokenizer pipeline len
pipe_iters, // tokenizer pipeline iterations
unk_hashes, // where to put the hashed results
data_window_size / sizeof (*unk_hashes), // max number of hashes
&unk_hashcount, // how many hashes we actually got
&next_offset); // where to start again for more hashes
if (internal_trace)
{
fprintf (stderr, "L.Total %ld hashes - first 16 values:\n"
"%u %u %u %u %u %u %u %u\n",
unk_hashcount,
unk_hashes[0],
unk_hashes[1],
unk_hashes[2],
unk_hashes[3],
unk_hashes[4],
unk_hashes[5],
unk_hashes[6],
unk_hashes[7]);
fprintf (stderr,
"%u %u %u %u %u %u %u %u\n",
unk_hashes[8],
unk_hashes[9],
unk_hashes[10],
unk_hashes[11],
unk_hashes[12],
unk_hashes[13],
unk_hashes[14],
unk_hashes[15]);
};
// Now a nasty bit. Because there might be retained hashes of the
// file, we need to force an unmap-by-name which will allow a remap
// with the new file length later on.
if (internal_trace)
fprintf (stderr,
"mmapping file %s for known state\n", hashfilename);
crm_mmap_file
(hashfilename, 0, 1, PROT_READ | PROT_WRITE,
MAP_SHARED, NULL);
crm_force_munmap_filename (hashfilename);
if (internal_trace)
fprintf (stderr,
"UNmmapped file %s for known state\n", hashfilename);
if (user_trace)
fprintf (stderr, "Opening FSCM file %s for append.\n",
hashfilename);
hashf = fopen ( hashfilename , "ab+");
if (user_trace)
fprintf (stderr, "Writing to hash file %s\n", hashfilename);
my_zero_chain.next = 0;
// Note the "+ 3" here - to put in a pair of sentinels in
// the output file: one at each end of a text segment.
for (i = 0; i < unk_hashcount + 3; i++)
dontcare = fwrite (& my_zero_chain,
sizeof (FSCM_HASH_CHAIN_CELL),
1,
hashf);
fclose (hashf);
};
// Now the file has the space; we can now mmap it and set up our
// working pointers.
stat (hashfilename, &statbuf);
if (internal_trace)
fprintf (stderr, "mmapping_2 file %s\n", hashfilename);
file_pointer =
crm_mmap_file (hashfilename,
0, statbuf.st_size,
PROT_READ | PROT_WRITE,
MAP_SHARED, NULL);
if (internal_trace)
fprintf (stderr, "mmapped_2 file %s\n", hashfilename);
// set up our pointers for the prefix table and the chains
file_header = (STATISTICS_FILE_HEADER_STRUCT *) file_pointer;
#if 0
{
FSCM_HEADER *f = (FSCM_HEADER *)(file_header + 1);
prefix_table_size = f->prefix_hash_table_length;
}
#else
prefix_table_size = file_header->chunks[3].length /
sizeof (FSCM_PREFIX_TABLE_CELL);
#endif
prefix_table = (FSCM_PREFIX_TABLE_CELL *)
&file_pointer[file_header->chunks[3].start];
chains = (FSCM_HASH_CHAIN_CELL *)
&file_pointer[file_header->chunks[4].start];
// Note the little two-step dance to recover the starting location
// of the new chain space.
//
newchainstart = 1 +
file_header->chunks[4].length / sizeof (FSCM_HASH_CHAIN_CELL);
if (internal_trace)
fprintf (stderr,
"Chain field: %lu (entries %lu) new chainstart offset %u\n",
(unsigned long)file_header->chunks[4].start
/ sizeof (FSCM_HASH_CHAIN_CELL),
(unsigned long)file_header->chunks[4].length
/ sizeof (FSCM_HASH_CHAIN_CELL),
newchainstart );
newchains = (FSCM_HASH_CHAIN_CELL *) &chains [newchainstart];
// ... and this is the new updated length.
file_header->chunks[4].length += (unk_hashcount + 3)
* sizeof (FSCM_HASH_CHAIN_CELL);
// For each hash, insert it into the prefix table
// at the right place (that is, at hash mod prefix_table_size).
// If the table had a zero, it becomes nonzero. If the table
// is nonzero, we walk the chain and modify the first zero
// to point to our new hash.
if (internal_trace)
{
fprintf (stderr,
"\n\nPrefix table size: %lu, starting at offset %u\n",
prefix_table_size, newchainstart);
};
for (i = 0; i < unk_hashcount; i++)
{
unsigned int pti, cind;
pti = unk_hashes[i] % prefix_table_size;
if (internal_trace)
{
fprintf (stderr,
"offset %ld icn: %lu hash %u tableslot %u"
" (prev offset %u)\n",
i, i + newchainstart, unk_hashes[i], pti,
prefix_table [pti].index );
cind = prefix_table[pti].index;
while ( cind != 0)
{
fprintf (stderr,
" ... now location %u forwards to %u \n",
cind, chains[cind].next);
cind = chains[cind].next;
};
};
// Desired State:
// chains [old] points to chains [new]
// prefix_table [pti] = chains [old]
if (prefix_table[pti].index == 0)
{ // first entry in this chain, so fill in the table.
prefix_table[pti].index = i + newchainstart;
chains [i + newchainstart].next = 0;
}
else
{ // not first entry-- chase the chain, we go at the end
cind = prefix_table[pti].index;
while (chains[cind].next != 0)
cind = chains [cind].next; // cdr down to end of chain
chains[cind].next = i + newchainstart; // point at our cell.
chains [i + newchainstart].next = 0;
};
};
// forcibly let go of the mmap to force an msync
if (internal_trace)
fprintf (stderr, "UNmmapping file %s\n", hashfilename);
crm_force_munmap_filename (hashfilename);
};
return (0);
};
// A helper (but crucial) function - given an array of hashes and,
// and a prefix_table / chain array pair, calculate the compressibility
// of the hashes; this is munged (reports say best accuracy if
// raised to the 1.5 power) and that is the returned value.
//
//
// The algorithm here is actually suboptimal.
// We take the first match presented (i.e. where unk_hashes[i] maps
// to a nonzero cell in the prefix table) then for each additional
// hash (i.e. unk_hashes[i+j] where there is a consecutive chain
// in the chains[q, q+1, q+2]; we sum the J raised to the q_exponent
// power for each such chain and report that result back.
//
// The trick we employ here is that for each starting position q
// all possible solutions are on q's chain, but also on q+1's
// chain, on q+2's chain, on q+3's chain, and so on.
//
// At this point, we can go two ways: we can use a single index (q)
// chain and search forward through the entire chain, or we can use
// multiple indices and an n-way merge of n chains to cut the number of
// comparisons down significantly.
//
// Which is optimal here? Let's assume the texts obey something like
// Zipf's law (Nth term is 1/Nth as likely as the 1st term). Then the
// probabile number of comparisons to find a string of length Q in
// a text of length |T| by using the first method is
// (1/N) + ( 1/ N) + ... = Q * (1/N) and we
// can stop as soon as we find a string of Q elements (but since we
// want the longest one, we check all |T| / N occurrences and that takes
// |T| * Q / N^2 comparisons, and we need roughly |U| comparisons
// overall, it's |T| * |U| * Q / N^2 .
//
// In the second method (find all chains of length Q or longer) we
// touch each of the Q chain members once. The number of members of
// each chain is roughly |T| / N and we need Q such chains, so the
// time is |T| * Q / N. However, at the next position
// we can simply drop the first chain's constraint; all of the other
// calculations have already been done once; essentially this search
// can be carried out *in parallel*; this cuts the work by a factor of
// the length of the unkonown string. However, dropping the constraint
// is very tricky programming and so we aren't doing that right now.
//
// We might form the sets where chain 1 and chain 2 are sequential in the
// memory. We then find where chains 2 and 3 are sequential in the
// memory; where chains 3 and 4 are sequential, etc. This is essentially
// a relational database "join" operation, but with "in same record"
// being replaced with "in sequential slots".
//
// Assume we have a vector "V" of indices carrying each chain's current
// putative pointer for a sequential match. (assume the V vector is
// as long as the input string).
//
// 0) We initialize the indexing vector "V" to the first element of each
// chan (or NULL for never-seen chains), and "start", "end", and
// "total" to zero.
// 1) We set the chain index-index "C" to 0 (the leftmost member
// of the index vector V).
// 2.0) We do a two-finger merge between the C'th and C + 1 chains,
// moving one chain link further on the lesser index in each cycle.
// (NB the current build method causes link indicess to be descending in
// numerical value; so we step to the next link on the _greater_ of the
// two chains.
// 2a) we stop the two-finger merge when:
// V[C] == V[C+1] + 1
// in which case
// >> C++,
// >> if C > end then end = C
// >> go to 2.0 (repeat the 2-finger merge);
// 2b) if the two-finger merge runs out of chain on either the
// C chain or the C++ chain (that is, a NULL):
// >> set the "out of chain" V element back to the innitial state;
// >> go back one chain pair ( "C = C--")
// If V[C] == NULL
// >> report out (end-start) as a maximal match (incrementing
// total by some amount),
// >> move C over to "end" in the input stream
// >> reset V[end+1]back to the chain starts. Anything further
// hasn't been touched and so can be left alone.
// >> go to 2.0
//
// This algorithm still has the flaw that for the input string
// ABCDE, the subchain BCDE is searched when the input string is at A.
// and then again at B. However, any local matches BC... are
// gauranteed to be captured in the AB... match (we would look at
// only the B's that follwed A's, not all of the B's even, so perhaps
// this isn't much extra work after all.
//
// Note: the reason for passing array of hashes rather than the original
// string is that the calculation of the hashes is necessary and it's
// more efficient to do it once and reuse. Also, it means that the
// hashes can be computed with a non-orthodox (i.e. not a string kernel)
// method and that might take serious computes and many regexecs.
////////////////////////////////////////////////////////////////////////
//
// Helper functions for the fast match.
//
////////////////////////////////////////////////////////////////////////
// given a starting point, does it exist on a chain?
static unsigned int chain_search_one_chain_link
(
FSCM_HASH_CHAIN_CELL *chains,
unsigned int chain_start,
unsigned int must_match,
int init_cache
)
{
int i, cachedex;
typedef struct {
unsigned int chstart;
unsigned int cval0;
unsigned int cval1;
} FSCM_CHAIN_CACHE_CELL;
static FSCM_CHAIN_CACHE_CELL cache [FSCM_CHAIN_CACHE_SIZE];
// zero the cache if requested
if ( init_cache )
{
if (internal_trace)
fprintf (stderr, "initializing the chain cache.\n");
for (i = 0; i < FSCM_CHAIN_CACHE_SIZE; i++)
{
cache[i].chstart = cache[i].cval0 = cache[i].cval1 = 0;
};
return (0);
};
if (internal_trace)
{
unsigned int j;
fprintf (stderr, " ... chain_search_one_chain chain %u mustmatch %u\n",
chain_start, must_match);
j = chain_start;
fprintf (stderr, "...chaintrace from %u: (next: %u)",
j, chains[j].next);
while (j != 0)
{
fprintf (stderr, " %u", j);
j = chains[j].next;
};
fprintf (stderr, "\n");
};
// Does either or both of our cache elements have a tighter bound
// on the mustmatch than the initial chainstart?
cachedex = chain_start % FSCM_CHAIN_CACHE_SIZE;
if (chain_start == cache[cachedex].chstart)
{
if ( cache[cachedex].cval0 < must_match
&& cache[cachedex].cval0 > chain_start)
chain_start = cache[cachedex].cval0;
if ( cache[cachedex].cval1 < must_match
&& cache[cachedex].cval1 > chain_start)
chain_start = cache[cachedex].cval1;
}
else // forcibly update the cache to the new chain_start
{
cache[cachedex].chstart = chain_start;
cache[cachedex].cval0 = chain_start;
cache[cachedex].cval1 = chain_start;
}
while ( chain_start < must_match && chain_start > 0)
{
if (internal_trace)
fprintf (stderr, " .... from %u to %u\n",
chain_start, chains[chain_start].next);
chain_start = chains[chain_start].next;
cache[cachedex].cval1 = cache[cachedex].cval0;
cache[cachedex].cval0 = chain_start;
}
if ( chain_start == must_match )
{
if (internal_trace)
fprintf (stderr, " ...Success at chainindex %u\n", chain_start );
return (chain_start);
};
if (internal_trace)
fprintf (stderr, " ...Failed\n");
return 0;
}
// From this point in chainspace, how long does this chain run?
//
// Do NOT implement this recursively, as a document matched against
// itself will recurse for each character, so unless your compiler
// can fix tail recursion, you'll blow the stack on long documents.
//
static unsigned int this_chain_run_length
(
FSCM_HASH_CHAIN_CELL *chains, // the known-text chains
unsigned int *unk_indexes, // index vector to head of each chain
unsigned int unk_len, // length of index vctor
unsigned int starting_symbol, // symbol where we start
unsigned int starting_chain_index // where it has to match (in chainspace)
)
{
unsigned int offset;
unsigned int chain_start;
unsigned int in_a_chain;
if (internal_trace)
fprintf (stderr,
"Looking for a chain member at symbol %u chainindex %u\n",
starting_symbol, starting_chain_index);
offset = 0; // The "offset" applies to both the unk_hashes _and_ the
// offset in the known chainspace.
in_a_chain = unk_indexes[starting_symbol + offset];
while ( (starting_symbol + offset < unk_len) && in_a_chain )
{
chain_start = unk_indexes[starting_symbol + offset];
if (internal_trace)
fprintf (stderr,
"..searching at [symbol %u offset %u] chainindex %u\n",
starting_symbol, offset, chain_start);
in_a_chain = chain_search_one_chain_link
( chains, chain_start, starting_chain_index + offset, 0);
if (in_a_chain) offset++;
};
if (internal_trace)
fprintf (stderr,
"chain_run_length finished at chain index %u (offset %u)\n",
starting_chain_index + offset, offset);
return (offset);
}
// Note- the two-finger algorithm works- but it's actually kind of
// hard to program in terms of it's asymmetry. So instead, we use a
// simpler repeated search algorithm with a cache at the bottom
// level so we don't repeatedly search the same (failing) elements
// of the chain).
//
//
// NB: if this looks a little like how the genomics BLAST
// match algorithm runs, yeah... I get that feeling too, although
// I have not yet found a good description of how BLAST actually works
// inside, and so can't say if this would be an improvement. However,
// it does beg the question of whether a BLAST-like algorithm might
// work even _better_ for text matching. Future note: use additional
// flag <blast> to allow short interruptions of match stream.
//
// longest_run_starting_here returns the length of the longest match
// found that starts at exactly index[starting_symbol]
//
static unsigned int longest_run_starting_here
(
FSCM_HASH_CHAIN_CELL *chains, // array of interlaced chain cells
unsigned int *unk_indexes, // index vector to head of each chain
unsigned int unk_len, // length of index vector
unsigned int starting_symbol // index of starting symbol
)
{
unsigned int chain_index_start; // Where in the primary chain we are.
unsigned int this_run, max_run;
if (internal_trace)
fprintf (stderr, "\n*** longest_run: starting at symbol %u\n",
starting_symbol);
chain_index_start = unk_indexes[starting_symbol];
this_run = max_run = 0;
if (chain_index_start == 0)
{
if (internal_trace)
fprintf (stderr, "longest_run: no starting chain here; returning\n");
return 0; // edge case - no match
};
// If we got here, we had at +least+ a max run of one match found
// (that being chain_index_start)
this_run = max_run = 1;
if (internal_trace)
fprintf (stderr, "longest_run: found a first entry (chain %u)\n",
chain_index_start);
while (chain_index_start != 0)
{
unsigned int chain_index_old;
if (internal_trace)
fprintf (stderr, "Scanning chain starting at %u\n",
chain_index_start);
this_run = this_chain_run_length
(chains, unk_indexes, unk_len,
starting_symbol+1, chain_index_start+1);
//
if (internal_trace)
fprintf (stderr,
"longest_run: chainindex run at %u is length %u\n",
chain_index_start, this_run);
if (this_run > max_run)
{
if (internal_trace)
fprintf (stderr, "longest_run: new maximum\n");
max_run = this_run;
}
else
{
if (internal_trace)
fprintf (stderr, "longest_run: not an improvement\n");
};
// And go around again till we hit a zero chain index
chain_index_start = chains[chain_index_start].next;
// skip forward till end of currently found best (Boyer-Moore opt)
chain_index_old = chain_index_start;
while (chain_index_start > 0
&& chain_index_start < chain_index_old + this_run)
chain_index_start = chains [chain_index_start].next;
};
if (internal_trace)
fprintf (stderr, "Final result at symbol %u run length is %u\n",
starting_symbol, max_run);
if (max_run > 0)
return ( max_run + FSCM_DEFAULT_CODE_PREFIX_LEN);
else
return (0);
}
// compress_me is the top-level calculating routine which calls
// all of the prior routines in the right way.
static double compress_me
(
unsigned int *unk_indexes, // prefix chain-entry table
unsigned int unk_len, // length of the entry table
FSCM_HASH_CHAIN_CELL *chains, // array of interlaced chain cells
double q_exponent // exponent of match
)
{
unsigned int current_symbol, this_run_length;
double total_score, incr_score;
int blast_lookback; // Only use if BLAST is desired.
total_score = 0.0;
current_symbol = 0;
blast_lookback = 0;
chain_search_one_chain_link (0, 0, 0, 1); // init the chain-cache
while (current_symbol < unk_len)
{
this_run_length = longest_run_starting_here
(chains, unk_indexes, unk_len, current_symbol);
incr_score = 0;
if (this_run_length > 0)
{
//this_run_length += blast_lookback;
incr_score = pow (this_run_length, q_exponent);
//blast_lookback = this_run_length;
};
//blast_lookback --;
//if (blast_lookback < 0) blast_lookback = 0;
//if (this_run_length > 2)
// fprintf (stderr, " %ld", this_run_length);
//else
// fprintf (stderr, "_");
total_score = total_score + incr_score;
if (internal_trace)
fprintf (stderr, "Offset %u compresses %u score %lf\n",
current_symbol, this_run_length, incr_score);
if (this_run_length > 0)
current_symbol = current_symbol + this_run_length;
else current_symbol++;
};
return (total_score);
}
// How to do an Improved FSCM CLASSIFY of some text.
//
int crm_fast_substring_classify (CSL_CELL *csl, ARGPARSE_BLOCK *apb,
char *txtptr, long txtstart, long txtlen)
{
// classify the compressed version of this text
// as belonging to a particular type.
//
// Much of this code should look very familiar- it's cribbed from
// the code for LEARN
//
long i, k;
char ptext[MAX_PATTERN]; // the regex pattern
long plen;
// the hash file names
long htext_maxlen = MAX_PATTERN+MAX_CLASSIFIERS*MAX_FILE_NAME_LEN;
// the match statistics variable
char stext [MAX_PATTERN+MAX_CLASSIFIERS*(MAX_FILE_NAME_LEN+100)];
long stext_maxlen = MAX_PATTERN+MAX_CLASSIFIERS*(MAX_FILE_NAME_LEN+100);
long slen;
char svrbl[MAX_PATTERN]; // the match statistics text buffer
long svlen;
long fnameoffset;
long use_unique;
long not_microgroom = 1;
long use_unigram_features;
long next_offset; // UNUSED for now!
struct stat statbuf; // for statting the hash file
regex_t regcb;
// Total hits per statistics file - one hit is nominally equivalent to
// compressing away one byte
// long totalhits[MAX_CLASSIFIERS];
//
// long totalfeatures; // total features
double tprob; // total probability in the "success" domain.
double ptc[MAX_CLASSIFIERS]; // current running probability of this class
// Classifier Coding Clarification- we'll do one file at a time, so
// these variables are moved to point to different statistics files
// in a loop.
char *file_pointer;
STATISTICS_FILE_HEADER_STRUCT *file_header; // the
FSCM_PREFIX_TABLE_CELL *prefix_table; // the prefix indexing table,
unsigned long prefix_table_size;
FSCM_HASH_CHAIN_CELL *chains; // the chain area
unsigned int *unk_indexes;
long fn_start_here;
char htext [MAX_PATTERN]; // the text of the names (unparsed)
long htextlen;
char hfname [MAX_PATTERN]; // the current file name
long fnstart, fnlen;
char hashfilenames [MAX_CLASSIFIERS][MAX_FILE_NAME_LEN]; // names (parsed)
long hashfilebytelens [MAX_CLASSIFIERS];
long hashfilechainentries [MAX_CLASSIFIERS];
long succhash; // how many hashfilenames are "success" files?
long vbar_seen; // did we see '|' in classify's args?
long maxhash;
long bestseen;
double scores [MAX_CLASSIFIERS]; // per-classifier raw score.
int *ca = NULL;
long pipelen = 0;
long pipe_iters = 0;
// We'll generate our unknown string's hashes directly into tempbuf.
long unk_hashcount;
unsigned *unk_hashes;
unk_hashes = (unsigned *) tempbuf;
if (internal_trace)
fprintf (stderr, "executing a Fast Substring Compression CLASSIFY\n");
// extract the hash file names
crm_get_pgm_arg (htext, htext_maxlen, apb->p1start, apb->p1len);
htextlen = apb->p1len;
htextlen = crm_nexpandvar (htext, htextlen, htext_maxlen);
// extract the "this is a compressible character" regex.
// Note that by and large this is not used!
//
crm_get_pgm_arg (ptext, MAX_PATTERN, apb->s1start, apb->s1len);
plen = apb->s1len;
plen = crm_nexpandvar (ptext, plen, MAX_PATTERN);
// extract the optional "match statistics" variable
//
crm_get_pgm_arg (svrbl, MAX_PATTERN, apb->p2start, apb->p2len);
svlen = apb->p2len;
svlen = crm_nexpandvar (svrbl, svlen, MAX_PATTERN);
{
long vstart, vlen;
crm_nextword (svrbl, svlen, 0, &vstart, &vlen);
memmove (svrbl, &svrbl[vstart], vlen);
svlen = vlen;
svrbl[vlen] = '\000';
};
if (user_trace)
fprintf (stderr, "Status out var %s (len %ld)\n",
svrbl, svlen);
// status variable's text (used for output stats)
//
stext[0] = '\000';
slen = 0;
// set flags
not_microgroom = 1;
if (apb->sflags & CRM_MICROGROOM)
{
not_microgroom = 0;
if (user_trace)
fprintf (stderr, " disabling fast-skip optimization.\n");
};
use_unique = 0;
if (apb->sflags & CRM_UNIQUE)
{
use_unique = 1;
if (user_trace)
fprintf (stderr, " unique engaged - repeated features are ignored \n");
};
use_unigram_features = 0;
if (apb->sflags & CRM_UNIGRAM)
{
use_unigram_features = 1;
if (user_trace)
fprintf (stderr, " using only unigram features. \n");
};
// Create our hashes; we do this once outside the loop and
// thus save time inside the loop.
unk_hashcount = 0;
next_offset = 0;
crm_vector_tokenize_selector
(apb, // the APB
txtptr, // intput string
txtstart, // starting offset
txtlen, // how many bytes
ptext, // parser regex
plen, // parser regex len
ca, // tokenizer coeff array
pipelen, // tokenizer pipeline len
pipe_iters, // tokenizer pipeline iterations
unk_hashes, // where to put the hashed results
data_window_size / sizeof(unsigned), // max number of hashes
&unk_hashcount, // how many hashes we actually got
&next_offset); // where to start again for more hashes
if (internal_trace)
{
fprintf (stderr, "C.Total %ld hashes - first 16 values:\n"
"%u %u %u %u %u %u %u %u\n",
unk_hashcount,
unk_hashes[0],
unk_hashes[1],
unk_hashes[2],
unk_hashes[3],
unk_hashes[4],
unk_hashes[5],
unk_hashes[6],
unk_hashes[7]);
fprintf (stderr,
"%u %u %u %u %u %u %u %u\n",
unk_hashes[8],
unk_hashes[9],
unk_hashes[10],
unk_hashes[11],
unk_hashes[12],
unk_hashes[13],
unk_hashes[14],
unk_hashes[15]);
};
if (user_trace)
fprintf (stderr, "Total of %lu initial features.\n", unk_hashcount);
unk_indexes = (unsigned int *) calloc (unk_hashcount+1, sizeof (unsigned int));
// Now, we parse the filenames and do a mmap/match/munmap loop
// on each file. The resulting number of hits is stored in the
// the loop to open the files.
vbar_seen = 0;
maxhash = 0;
succhash = 0;
fnameoffset = 0;
// now, get the file names and mmap each file
// get the file name (grody and non-8-bit-safe, but doesn't matter
// because the result is used for open() and nothing else.
// GROT GROT GROT this isn't NULL-clean on filenames. But then
// again, stdio.h itself isn't NULL-clean on filenames.
if (user_trace)
fprintf (stderr, "Classify list: -%s- \n", htext);
fn_start_here = 0;
fnlen = 1;
while ( fnlen > 0 && ((maxhash < MAX_CLASSIFIERS-1)))
{
crm_nextword (htext,
htextlen, fn_start_here,
&fnstart, &fnlen);
if (fnlen > 0)
{
strncpy (hfname, &htext[fnstart], fnlen);
fn_start_here = fnstart + fnlen + 1;
hfname[fnlen] = '\000';
strncpy (hashfilenames[maxhash], hfname, fnlen);
hashfilenames[maxhash][fnlen] = '\000';
if (user_trace)
fprintf (stderr,
"Classifying with file -%s- succhash=%ld, maxhash=%ld\n",
hashfilenames[maxhash], succhash, maxhash);
if ( hfname[0] == '|' && hfname[1] == '\000')
{
if (vbar_seen)
{
nonfatalerror5
("Only one ' | ' allowed in a CLASSIFY. \n" ,
"We'll ignore it for now.", CRM_ENGINE_HERE);
}
else
{
succhash = maxhash;
};
vbar_seen ++;
}
else
{
// be sure the file exists
// stat the file to get it's length
k = stat (hfname, &statbuf);
// quick check- does the file even exist?
if (k != 0)
{
nonfatalerror5
("Nonexistent Classify table named: ",
hfname, CRM_ENGINE_HERE);
}
else
{
// file exists - do the open/process/close
//
hashfilebytelens[maxhash] = statbuf.st_size;
// mmap the hash file into memory so we can bitwhack it
file_pointer =
crm_mmap_file (hfname,
0, hashfilebytelens[maxhash],
PROT_READ,
MAP_SHARED,
NULL);
if (file_pointer == MAP_FAILED )
{
nonfatalerror5
("Couldn't memory-map the table file :",
hfname, CRM_ENGINE_HERE);
}
else
{
// GROT GROT GROT
// GROT Actually implement this someday!!!
// Check to see if this file is the right version
// GROT GROT GROT
// set up our pointers for the prefix table and
// the chains
file_header =
(STATISTICS_FILE_HEADER_STRUCT *) file_pointer;
if (internal_trace)
fprintf (stderr,
"Prefix table at %lu, chains at %lu\n",
(long unsigned) file_header->chunks[3].start,
(long unsigned) file_header->chunks[4].start);
prefix_table = (FSCM_PREFIX_TABLE_CELL *)
&file_pointer[file_header->chunks[3].start];
#if 0
{
FSCM_HEADER *f = (FSCM_HEADER *)(file_header + 1);
prefix_table_size = f->prefix_hash_table_length;
}
#else
prefix_table_size = file_header->chunks[3].length /
sizeof (FSCM_PREFIX_TABLE_CELL);
#endif
chains = (FSCM_HASH_CHAIN_CELL *)
&file_pointer[file_header->chunks[4].start];
// GROT GROT GROT pointer arithmetic is gross!!!
hashfilechainentries[maxhash] =
file_header->chunks[4].length
/ sizeof (FSCM_HASH_CHAIN_CELL);
if (internal_trace)
fprintf (stderr,
" Prefix table size = %ld\n",
prefix_table_size);
// initialize the index vector to the chain starts
// (some of which are NULL).
for (i = 0; i < unk_hashcount; i++)
{
unsigned int uhmpts;
uhmpts = unk_hashes[i] % prefix_table_size;
unk_indexes[i] = (unsigned int)
prefix_table [uhmpts].index;
if (internal_trace)
fprintf (stderr,
"unk_hashes[%ld] = %u, index = %u, "
" prefix_table[%u] = %u \n",
i, unk_hashes[i], uhmpts,
uhmpts, prefix_table[uhmpts].index);
};
// Now for the nitty-gritty - run the compression
// of the unknown versus tis statistics file.
// For thk=0.1, power of 1.2 --> 36 errs,
// 1.5--> 49 errs, 1.7-->52, and 1.0 bogged down
// At thk=0.0 exponent 1.0-->191 and 18 min
// thk 0.1 exp 1.35 --> 34 in 12min. and exp 1.1 -> 43
// thk 0.05 exp 1.1--> 50.
scores [maxhash] = compress_me
(unk_indexes,
unk_hashcount,
chains,
(double) 1.35);
};
maxhash++;
};
};
if (maxhash > MAX_CLASSIFIERS-1)
nonfatalerror5 ("Too many classifier files.",
"Some may have been disregarded", CRM_ENGINE_HERE);
};
};
//
// If there is no '|', then all files are "success" files.
if (succhash == 0)
succhash = maxhash;
if (user_trace)
fprintf (stderr, "Running with %ld files for success out of %ld files\n",
succhash, maxhash );
// sanity checks... Uncomment for super-strict CLASSIFY.
//
// do we have at least 1 valid .css files?
if (maxhash == 0)
{
nonfatalerror5
("Couldn't open at least one .css files for classify().",
"", CRM_ENGINE_HERE);
};
// do we have at least 1 valid .css file at both sides of '|'?
// if (!vbar_seen || succhash < 0 || (maxhash < succhash + 2))
// {
// nonfatalerror (
// "Couldn't open at least 1 .css file per SUCC | FAIL category "
// " for classify().\n","Hope you know what are you doing.");
// };
///////////////////////////////////////////////////////////
//
// To translate score (which is exponentiated compression) we
// just normalize to a sum of 1.000 . Note that we start off
// with a minimum per-class score of "tiny" to avoid divide-by-zero
// problems (zero scores on everything => divide by zero)
tprob = 0.0;
for (i = 0; i < MAX_CLASSIFIERS; i++)
ptc[i] = 0.0;
for (i = 0; i < maxhash; i++)
{
ptc[i] = scores [i] ;
if (ptc[i] < 0.0001)
ptc[i] = 0.0001;
tprob = tprob + ptc[i];
};
// Renormalize probabilities
for (i = 0; i < maxhash; i++)
ptc[i] = ptc[i] / tprob;
if (user_trace)
{
for (k = 0; k < maxhash; k++)
fprintf (stderr, "Match for file %ld: compress: %f prob: %f\n",
k, scores[k], ptc[k]);
};
bestseen = 0;
for (i = 0; i < maxhash; i++)
if (ptc[i] > ptc[bestseen])
bestseen = i;
// Reset tprob to contain sum of probabilities of success classes.
tprob = 0.0;
for (k = 0; k < succhash; k++)
tprob = tprob + ptc[k];
if (svlen > 0)
{
char buf[1024];
double accumulator;
double remainder;
double overall_pR;
long m;
buf [0] = '\000';
accumulator = 1000 * DBL_MIN;
for (m = 0; m < succhash; m++)
{
accumulator = accumulator + ptc[m];
};
remainder = 1000 * DBL_MIN;
for (m = succhash; m < maxhash; m++)
{
remainder = remainder + ptc[m];
};
if (internal_trace)
fprintf (stderr, "succ: %ld, max: %ld, acc: %lf, rem: %lf\n",
succhash, maxhash, accumulator, remainder);
// constant "200" below determined empirically for SSTTT at 10 pR's
// (used to be 10)
overall_pR = 200 * (log10 (accumulator) - log10(remainder));
// note also that strcat _accumulates_ in stext.
// There would be a possible buffer overflow except that _we_ control
// what gets written here. So it's no biggie.
if (tprob > 0.5000)
{
sprintf (buf, "CLASSIFY succeeds; success probability: %6.4f pR: %6.4f\n", tprob, overall_pR );
}
else
{
sprintf (buf, "CLASSIFY fails; success probability: %6.4f pR: %6.4f\n", tprob, overall_pR );
};
if (strlen (stext) + strlen(buf) <= stext_maxlen)
strcat (stext, buf);
remainder = 1000 * DBL_MIN;
for (m = 0; m < maxhash; m++)
if (bestseen != m)
{
remainder = remainder + ptc[m];
};
sprintf (buf,
"Best match to file #%ld (%s) prob: %6.4f pR: %6.4f \n",
bestseen,
hashfilenames[bestseen],
ptc [bestseen ],
// "200" is for SSTTT, was 10
200 * (log10 (ptc [bestseen]) - log10 ( remainder ) )
);
if (strlen (stext) + strlen(buf) <= stext_maxlen)
strcat (stext, buf);
sprintf (buf, "Total features in input file: %ld\n", unk_hashcount);
if (strlen (stext) + strlen(buf) <= stext_maxlen)
strcat (stext, buf);
for (k = 0; k < maxhash; k++)
{
long m;
remainder = 1000 * DBL_MIN;
for (m = 0; m < maxhash; m++)
if (k != m)
{
remainder = remainder + ptc[m];
};
sprintf (buf,
"#%ld (%s):"
" features: %ld, chcs: %6.2f, prob: %3.2e, pR: %6.2f \n",
k,
hashfilenames[k],
hashfilechainentries[k],
scores[k],
ptc[k],
200 * (log10 (ptc[k]) - log10 (remainder) ) );
// strcat (stext, buf);
if (strlen(stext)+strlen(buf) <= stext_maxlen)
strcat (stext, buf);
};
// check here if we got enough room in stext to stuff everything
// perhaps we'd better rise a nonfatalerror, instead of just
// whining on stderr
if (strcmp(&(stext[strlen(stext)-strlen(buf)]), buf) != 0)
{
nonfatalerror5( "WARNING: not enough room in the buffer to create "
"the statistics text. Perhaps you could try bigger "
"values for MAX_CLASSIFIERS or MAX_FILE_NAME_LEN?",
" ", CRM_ENGINE_HERE);
};
crm_destructive_alter_nvariable (svrbl, svlen,
stext, strlen (stext));
};
// cleanup time!
// and let go of the regex buffery
if (ptext[0] != '\0') crm_regfree (®cb);
if (tprob > 0.5000)
{
// all done... if we got here, we should just continue execution
if (user_trace)
fprintf (stderr, "CLASSIFY was a SUCCESS, continuing execution.\n");
}
else
{
if (user_trace)
fprintf (stderr, "CLASSIFY was a FAIL, skipping forward.\n");
// and do what we do for a FAIL here
csl->cstmt = csl->mct[csl->cstmt]->fail_index - 1;
csl->aliusstk [csl->mct[csl->cstmt]->nest_level] = -1;
return (0);
};
//
// regcomp_failed:
return (0);
};
|