Primary contact <firstname.lastname@example.org>
Cole Trapnell designed and wrote Cufflinks and Cuffdiff, with substantial technical input
from Geo Pertea, Brian Williams, Ali Mortazavi, Jeltje van Baren, Steven Salzberg, Barbara Wold,
and Lior Pachter. Geo Pertea wrote Cuffcompare. Adam Roberts made substantial improvements to
the abundance estimation model used by Cufflinks and Cuffdiff.
As of version 1.0, Cufflinks depends on and includes LOCFIT, a regression package originally written
by Catherine Loader and Jiayang Sun. Some modifications were made to LOCFIT. Modified source
for LOCFIT lives in src/locfit.