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Source: cufflinks
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Alexandre Mestiashvili <alex@biotec.tu-dresden.de>,
Andreas Tille <tille@debian.org>,
Charles Plessy <plessy@debian.org>
Section: non-free/science
XS-Autobuild: no
Priority: optional
Build-Depends: debhelper (>= 9),
help2man,
autotools-dev,
libboost-dev (>= 1.47.0),
libboost-thread-dev (>= 1.47.0),
libboost-system-dev (>= 1.47.0),
libbam-dev (>= 0.1.16),
zlib1g-dev,
dh-autoreconf,
python,
libeigen3-dev
Standards-Version: 3.9.5
Vcs-Browser: http://anonscm.debian.org/gitweb/?p=debian-med/cufflinks.git
Vcs-Git: git://anonscm.debian.org/debian-med/cufflinks.git
Homepage: http://cufflinks.cbcb.umd.edu
Package: cufflinks
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
python
Enhances: tophat
Description: Transcript assembly, differential expression and regulation for RNA-Seq
Cufflinks assembles transcripts, estimates their abundances, and tests for
differential expression and regulation in RNA-Seq samples. It accepts aligned
RNA-Seq reads and assembles the alignments into a parsimonious set of
transcripts. Cufflinks then estimates the relative abundances of these
transcripts based on how many reads support each one.
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