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# This file is part of cwl-upgrader
# https://github.com/common-workflow-language/cwl-upgrader/, and is
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
# Contact: common-workflow-language@googlegroups.com
# make format to fix most python formatting errors
# make pylint to check Python code for enhanced compliance including naming
# and documentation
# make coverage-report to check coverage of the python scripts by the tests
MODULE=cwl-upgrader
PACKAGE=cwlupgrader
EXTRAS=
# `SHELL=bash` doesn't work for some, so don't use BASH-isms like
# `[[` conditional expressions.
PYSOURCES=$(wildcard cwlupgrader/**.py tests/*.py)
DEVPKGS=diff_cover black pylint pep257 pydocstyle flake8 tox virtualenv-pyenv \
isort wheel autoflake flake8-bugbear pyupgrade bandit build \
auto-walrus -rtest-requirements.txt -rmypy-requirements.txt
DEBDEVPKGS=pylint python3-coverage sloccount \
python3-flake8 shellcheck
VERSION=$(shell grep __version__ cwlupgrader/__init__.py | awk -F\" '{ print $$2 }')
## all : default task (install cwl-upgrader in dev mode)
all: dev
## help : print this help message and exit
help: Makefile
@sed -n 's/^##//p' $<
## cleanup : shortcut for "make sort_imports format flake8 diff_pydocstyle_report"
cleanup: sort_imports format flake8 diff_pydocstyle_report
## install-dep : install most of the development dependencies via pip
install-dep: install-dependencies
install-dependencies: FORCE
pip install --upgrade $(DEVPKGS)
pip install -r requirements.txt -r mypy-requirements.txt
## install : install the cwlupgrader package and scripts
install: FORCE
pip install .$(EXTRAS)
## dev : install the cwlupgrader package in dev mode
dev: install-dep
pip install -U pip setuptools wheel
pip install -e .$(EXTRAS)
## dist : create a module package for distribution
dist: dist/${MODULE}-$(VERSION).tar.gz
dist/${MODULE}-$(VERSION).tar.gz: $(SOURCES)
python -m build
## clean : clean up all temporary / machine-generated files
clean: FORCE
rm -f ${MODILE}/*.pyc tests/*.pyc
rm -Rf .coverage
rm -f diff-cover.html
# Linting and code style related targets
## sort_import : sorting imports using isort: https://github.com/timothycrosley/isort
sort_imports: $(PYSOURCES) mypy-stubs
isort $^
remove_unused_imports: $(PYSOURCES)
autoflake --in-place --remove-all-unused-imports $^
pep257: pydocstyle
## pydocstyle : check Python docstring style
pydocstyle: $(PYSOURCES)
pydocstyle --add-ignore=D100,D101,D102,D103 $^ || true
pydocstyle_report.txt: $(PYSOURCES)
pydocstyle $^ > $@ 2>&1 || true
## diff_pydocstyle_report : check Python docstring style for changed files only
diff_pydocstyle_report: pydocstyle_report.txt
diff-quality --compare-branch=main --violations=pydocstyle --fail-under=100 $^
## codespell : check for common misspellings
codespell:
codespell -w $(shell git ls-files | grep -v mypy-stubs | grep -v gitignore | grep -v EDAM.owl | grep -v pre.yml | grep -v test_schema)
## format : check/fix all code indentation and formatting (runs black)
format:
black cwlupgrader tests mypy-stubs
format-check:
black --diff --check cwlupgrader mypy-stubs
## pylint : run static code analysis on Python code
pylint: $(PYSOURCES)
pylint --msg-template="{path}:{line}: [{msg_id}({symbol}), {obj}] {msg}" \
$^ -j0|| true
pylint_report.txt: $(PYSOURCES)
pylint --msg-template="{path}:{line}: [{msg_id}({symbol}), {obj}] {msg}" \
$^ -j0> $@ || true
diff_pylint_report: pylint_report.txt
diff-quality --compare-branch=main --violations=pylint pylint_report.txt
.coverage: testcov
coverage: .coverage
coverage report
coverage.xml: .coverage
coverage xml
coverage.html: htmlcov/index.html
htmlcov/index.html: .coverage
coverage html
@echo Test coverage of the Python code is now in htmlcov/index.html
coverage-report: .coverage
coverage report
diff-cover: coverage.xml
diff-cover --compare-branch=main $^
diff-cover.html: coverage.xml
diff-cover --compare-branch=main $^ --html-report $@
## test : run the cwlupgrader test suite
test: $(PYSOURCES)
python -m pytest -rs ${PYTEST_EXTRA}
## testcov : run the cwlupgrader test suite and collect coverage
testcov: $(PYSOURCES)
python -m pytest --cov ${PYTEST_EXTRA}
sloccount.sc: $(PYSOURCES) Makefile
sloccount --duplicates --wide --details $^ > $@
## sloccount : count lines of code
sloccount: $(PYSOURCES) Makefile
sloccount $^
list-author-emails:
@echo 'name, E-Mail Address'
@git log --format='%aN,%aE' | sort -u | grep -v 'root'
mypy3: mypy
mypy: $(PYSOURCES)
MYPYPATH=$$MYPYPATH:mypy-stubs mypy $^
shellcheck: FORCE
shellcheck conformance-test.sh release-test.sh
pyupgrade: $(PYSOURCES)
pyupgrade --exit-zero-even-if-changed --py310-plus $^
auto-walrus $^
release-test: FORCE
git diff-index --quiet HEAD -- || ( echo You have uncommitted changes, please commit them and try again; false )
./release-test.sh
release: release-test
. testenv2/bin/activate && \
pip install build && \
python -m build testenv2/src/${MODULE} && \
pip install twine && \
twine upload testenv2/src/${MODULE}/dist/* && \
git tag v${VERSION} && git push --tags
flake8: FORCE
flake8 $(PYSOURCES)
FORCE:
# Use this to print the value of a Makefile variable
# Example `make print-VERSION`
# From https://www.cmcrossroads.com/article/printing-value-makefile-variable
print-% : ; @echo $* = $($*)
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