File: EDAM_subset.owl

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<?xml version="1.0"?>


<!DOCTYPE rdf:RDF [
    <!ENTITY foaf "http://xmlns.com/foaf/0.1/" >
    <!ENTITY doap "http://usefulinc.com/ns/doap#" >
    <!ENTITY owl "http://www.w3.org/2002/07/owl#" >
    <!ENTITY oboOther "http://purl.obolibrary.org/obo/" >
    <!ENTITY dc "http://purl.org/dc/elements/1.1/" >
    <!ENTITY xsd "http://www.w3.org/2001/XMLSchema#" >
    <!ENTITY edam "http://purl.obolibrary.org/obo/edam#" >
    <!ENTITY rdfs "http://www.w3.org/2000/01/rdf-schema#" >
    <!ENTITY rdf "http://www.w3.org/1999/02/22-rdf-syntax-ns#" >
    <!ENTITY oboInOwl "http://www.geneontology.org/formats/oboInOwl#" >
]>


<rdf:RDF xmlns="http://edamontology.org/"
     xml:base="http://edamontology.org/"
     xmlns:dc="http://purl.org/dc/elements/1.1/"
     xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
     xmlns:foaf="http://xmlns.com/foaf/0.1/"
     xmlns:owl="http://www.w3.org/2002/07/owl#"
     xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
     xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
     xmlns:oboOther="http://purl.obolibrary.org/obo/"
     xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"
     xmlns:doap="http://usefulinc.com/ns/doap#"
     xmlns:edam="&oboOther;edam#">
    <owl:Ontology rdf:about="http://edamontology.org">
        <oboOther:idspace>EDAM_topic http://edamontology.org/topic_ &quot;EDAM topics&quot;</oboOther:idspace>
        <oboOther:idspace>EDAM_operation http://edamontology.org/operation_ &quot;EDAM operations&quot;</oboOther:idspace>
        <oboOther:date>09:07:2015</oboOther:date>
        <next_id>3625</next_id>
        <oboInOwl:hasSubset>formats &quot;EDAM data formats&quot;</oboInOwl:hasSubset>
        <oboOther:default-relationship-id-prefix>EDAM</oboOther:default-relationship-id-prefix>
        <dc:title>An ontology of bioinformatics topics, operations, types of data including identifiers, and data formats</dc:title>
        <oboInOwl:hasSubset>identifiers &quot;EDAM types of identifiers&quot;</oboInOwl:hasSubset>
        <oboInOwl:hasSubset>data &quot;EDAM types of data&quot;</oboInOwl:hasSubset>
        <oboInOwl:hasSubset>relations &quot;EDAM relations&quot;</oboInOwl:hasSubset>
        <oboInOwl:hasSubset>edam &quot;EDAM&quot;</oboInOwl:hasSubset>
        <oboOther:remark>EDAM editors: Jon Ison, Matus Kalas, and Herve Menager. Contributors: Inge Jonassen, Dan Bolser, Hamish McWilliam, Mahmut Uludag, James Malone, Rodrigo Lopez, Steve Pettifer, and Peter Rice. Contibutions from these projects: EMBRACE, ELIXIR, and BioMedBridges (EU); EMBOSS (BBSRC, UK); eSysbio, FUGE Bioinformatics Platform, and ELIXIR.NO/Norwegian Bioinformatics Platform (Research Council of Norway). See http://edamontology.org for documentation and licence.</oboOther:remark>
        <oboInOwl:hasSubset>operations &quot;EDAM operations&quot;</oboInOwl:hasSubset>
        <oboOther:idspace>EDAM http://edamontology.org/ &quot;EDAM relations and concept properties&quot;</oboOther:idspace>
        <dc:format>application/rdf+xml</dc:format>
        <oboOther:idspace>EDAM_data http://edamontology.org/data_ &quot;EDAM types of data&quot;</oboOther:idspace>
        <oboInOwl:hasSubset>concept_properties &quot;EDAM concept properties&quot;</oboInOwl:hasSubset>
        <dc:creator>Jon Ison</dc:creator>
        <dc:creator>Matúš Kalaš</dc:creator>
        <oboInOwl:savedBy>Jon Ison, Matus Kalas, Hervé Ménager</oboInOwl:savedBy>
        <oboOther:idspace>EDAM_format http://edamontology.org/format_ &quot;EDAM data formats&quot;</oboOther:idspace>
        <oboInOwl:hasSubset>topics &quot;EDAM topics&quot;</oboInOwl:hasSubset>
        <doap:Version>1.11</doap:Version>
        <dc:creator>Hervé Ménager</dc:creator>
        <oboOther:remark>EDAM is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM is a simple ontology - essentially a set of terms with synonyms and definitions - organised into an intuitive hierarchy for convenient use by curators, software developers and end-users. EDAM is suitable for large-scale semantic annotations and categorization of diverse bioinformatics resources.  EDAM is also suitable for diverse application including for example within workbenches and workflow-management systems, software distributions, and resource registries.</oboOther:remark>
        <rdfs:isDefinedBy rdf:resource="http://edamontology.org/EDAM.owl"/>
        <foaf:page rdf:resource="http://edamontology.org/page"/>
    </owl:Ontology>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Annotation properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://edamontology.org/created_in -->

    <owl:AnnotationProperty rdf:about="http://edamontology.org/created_in">
        <rdfs:label>Created in</rdfs:label>
        <oboInOwl:hasDefinition>Version in which a concept was created.</oboInOwl:hasDefinition>
        <oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
        <oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
    </owl:AnnotationProperty>
    


    <!-- http://edamontology.org/documentation -->

    <owl:AnnotationProperty rdf:about="http://edamontology.org/documentation">
        <rdfs:label>Documentation</rdfs:label>
        <oboInOwl:hasRelatedSynonym>Specification</oboInOwl:hasRelatedSynonym>
        <oboInOwl:hasDefinition>&apos;Documentation&apos; trailing modifier (qualifier, &apos;documentation&apos;) of &apos;xref&apos; links of &apos;Format&apos; concepts. When &apos;true&apos;, the link is pointing to a page with explanation, description, documentation, or specification of the given data format.</oboInOwl:hasDefinition>
        <oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
        <oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
    </owl:AnnotationProperty>
    


    <!-- http://edamontology.org/example -->

    <owl:AnnotationProperty rdf:about="http://edamontology.org/example">
        <rdfs:label>Example</rdfs:label>
        <oboInOwl:hasDefinition>&apos;Example&apos; concept property (&apos;example&apos; metadat tag) lists examples of valid values of types of identifiers (accessions). Applicable to some other types of data, too.</oboInOwl:hasDefinition>
        <oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
        <oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
    </owl:AnnotationProperty>
    


    <!-- http://edamontology.org/noClue -->

    <owl:AnnotationProperty rdf:about="http://edamontology.org/noClue"/>
    


    <!-- http://edamontology.org/obsolete_since -->

    <owl:AnnotationProperty rdf:about="http://edamontology.org/obsolete_since">
        <rdfs:label>Obsolete since</rdfs:label>
        <oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
        <oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
        <oboInOwl:hasDefinition>Version in which a concept was made obsolete.</oboInOwl:hasDefinition>
    </owl:AnnotationProperty>
    


    <!-- http://edamontology.org/regex -->

    <owl:AnnotationProperty rdf:about="http://edamontology.org/regex">
        <rdfs:label>Regular expression</rdfs:label>
        <oboInOwl:hasDefinition>&apos;Regular expression&apos; concept property (&apos;regex&apos; metadata tag) specifies the allowed values of types of identifiers (accessions). Applicable to some other types of data, too.</oboInOwl:hasDefinition>
        <oboInOwl:inSubset>concept_properties</oboInOwl:inSubset>
        <oboOther:is_metadata_tag>true</oboOther:is_metadata_tag>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/is_anti_symmetric -->

    <owl:AnnotationProperty rdf:about="&oboOther;is_anti_symmetric"/>
    


    <!-- http://purl.obolibrary.org/obo/is_metadata_tag -->

    <owl:AnnotationProperty rdf:about="&oboOther;is_metadata_tag"/>
    


    <!-- http://purl.obolibrary.org/obo/is_reflexive -->

    <owl:AnnotationProperty rdf:about="&oboOther;is_reflexive"/>
    


    <!-- http://purl.obolibrary.org/obo/is_symmetric -->

    <owl:AnnotationProperty rdf:about="&oboOther;is_symmetric"/>
    


    <!-- http://purl.obolibrary.org/obo/namespace -->

    <owl:AnnotationProperty rdf:about="&oboOther;namespace"/>
    


    <!-- http://purl.obolibrary.org/obo/transitive_over -->

    <owl:AnnotationProperty rdf:about="&oboOther;transitive_over"/>
    


    <!-- http://purl.obolibrary.org/obo/edam#data -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#data">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#edam -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#edam">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#events -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#events">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#formats -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#formats">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#identifiers -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#identifiers">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#obsolete -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#obsolete">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#operations -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#operations">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://purl.obolibrary.org/obo/edam#topics -->

    <owl:AnnotationProperty rdf:about="&oboOther;edam#topics">
        <rdfs:subPropertyOf rdf:resource="&oboInOwl;SubsetProperty"/>
    </owl:AnnotationProperty>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#SubsetProperty -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;SubsetProperty"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#consider -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;consider"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasAlternativeId"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasBroadSynonym"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasDbXref"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasDefinition -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasDefinition"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasExactSynonym"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasNarrowSynonym"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasRelatedSynonym"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#hasSubset -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;hasSubset"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#inSubset -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;inSubset"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#isCyclic -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;isCyclic"/>
    


    <!-- http://www.geneontology.org/formats/oboInOwl#replacedBy -->

    <owl:AnnotationProperty rdf:about="&oboInOwl;replacedBy"/>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Object Properties
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    


    <!-- http://edamontology.org/has_format -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/has_format">
        <rdfs:label>has format</rdfs:label>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000298&quot;</rdfs:seeAlso>
        <rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is (or is in a role of) &apos;Data&apos;, or an input, output, input or output argument of an &apos;Operation&apos;. Object B can either be a concept that is a &apos;Format&apos;, or in unexpected cases an entity outside of an ontology that is a &apos;Format&apos; or is in the role of a &apos;Format&apos;. In EDAM, &apos;has_format&apos; is not explicitly defined between EDAM concepts, only the inverse &apos;is_format_of&apos;.</rdfs:comment>
        <oboInOwl:isCyclic>false</oboInOwl:isCyclic>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#has-quality&quot;</rdfs:seeAlso>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <oboInOwl:hasDefinition>&apos;A has_format B&apos; defines for the subject A, that it has the object B as its data format.</oboInOwl:hasDefinition>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
        <rdfs:range rdf:resource="http://edamontology.org/format_1915"/>
    </owl:ObjectProperty>
    


    <!-- http://edamontology.org/has_function -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/has_function">
        <rdfs:label>has function</rdfs:label>
        <rdfs:seeAlso>http://wsio.org/has_function</rdfs:seeAlso>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboInOwl:hasRelatedSynonym>OBO_REL:bearer_of</oboInOwl:hasRelatedSynonym>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is (or is in a role of) a function, or an entity outside of an ontology that is (or is in a role of) a function specification. In the scope of EDAM, &apos;has_function&apos; serves only for relating annotated entities outside of EDAM with &apos;Operation&apos; concepts.</rdfs:comment>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#has-quality&quot;</rdfs:seeAlso>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboInOwl:hasDefinition>&apos;A has_function B&apos; defines for the subject A, that it has the object B as its function.</oboInOwl:hasDefinition>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000306&quot;</rdfs:seeAlso>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <rdfs:range rdf:resource="http://edamontology.org/operation_0004"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_function"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    <owl:Axiom>
        <rdfs:comment>Is defined anywhere? Not in the &apos;unknown&apos; version of RO. &apos;OBO_REL:bearer_of&apos; is narrower in the sense that it only relates ontological categories (concepts) that are an &apos;independent_continuant&apos; (snap:IndependentContinuant) with ontological categories that are a &apos;specifically_dependent_continuant&apos; (snap:SpecificallyDependentContinuant), and broader in the sense that it relates with any borne objects not just functions of the subject.</rdfs:comment>
        <owl:annotatedTarget>OBO_REL:bearer_of</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_function"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/has_identifier -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/has_identifier">
        <rdfs:label>has identifier</rdfs:label>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <oboInOwl:hasDefinition>&apos;A has_identifier B&apos; defines for the subject A, that it has the object B as its identifier.</oboInOwl:hasDefinition>
        <rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is an &apos;Identifier&apos;, or an entity outside of an ontology that is an &apos;Identifier&apos; or is in the role of an &apos;Identifier&apos;. In EDAM, &apos;has_identifier&apos; is not explicitly defined between EDAM concepts, only the inverse &apos;is_identifier_of&apos;.</rdfs:comment>
        <oboInOwl:isCyclic>false</oboInOwl:isCyclic>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
        <rdfs:range rdf:resource="http://edamontology.org/data_0842"/>
    </owl:ObjectProperty>
    


    <!-- http://edamontology.org/has_input -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/has_input">
        <rdfs:label>has input</rdfs:label>
        <oboInOwl:hasRelatedSynonym>OBO_REL:has_participant</oboInOwl:hasRelatedSynonym>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000293&quot;</rdfs:seeAlso>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <rdfs:seeAlso>http://wsio.org/has_input</rdfs:seeAlso>
        <rdfs:comment>Subject A can either be concept that is or has an &apos;Operation&apos; function, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that has an &apos;Operation&apos; function or is an &apos;Operation&apos;. Object B can be any concept or entity. In EDAM, only &apos;has_input&apos; is explicitly defined between EDAM concepts (&apos;Operation&apos; &apos;has_input&apos; &apos;Data&apos;). The inverse, &apos;is_input_of&apos;, is not explicitly defined.</rdfs:comment>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboInOwl:hasDefinition>&apos;A has_input B&apos; defines for the subject A, that it has the object B as a necessary or actual input or input argument.</oboInOwl:hasDefinition>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
        <rdfs:domain rdf:resource="http://edamontology.org/operation_0004"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <owl:annotatedTarget>OBO_REL:has_participant</owl:annotatedTarget>
        <rdfs:comment>&apos;OBO_REL:has_participant&apos; is narrower in the sense that it only relates ontological categories (concepts) that are a &apos;process&apos; (span:Process) with ontological categories that are a &apos;continuant&apos; (snap:Continuant), and broader in the sense that it relates with any participating objects not just inputs or input arguments of the subject.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_input"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    <owl:Axiom>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_input"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/has_output -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/has_output">
        <rdfs:label>has output</rdfs:label>
        <rdfs:seeAlso>http://wsio.org/has_output</rdfs:seeAlso>
        <rdfs:comment>Subject A can either be concept that is or has an &apos;Operation&apos; function, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that has an &apos;Operation&apos; function or is an &apos;Operation&apos;. Object B can be any concept or entity. In EDAM, only &apos;has_output&apos; is explicitly defined between EDAM concepts (&apos;Operation&apos; &apos;has_output&apos; &apos;Data&apos;). The inverse, &apos;is_output_of&apos;, is not explicitly defined.</rdfs:comment>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000299&quot;</rdfs:seeAlso>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboInOwl:hasRelatedSynonym>OBO_REL:has_participant</oboInOwl:hasRelatedSynonym>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboInOwl:hasDefinition>&apos;A has_output B&apos; defines for the subject A, that it has the object B as a necessary or actual output or output argument.</oboInOwl:hasDefinition>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
        <rdfs:domain rdf:resource="http://edamontology.org/operation_0004"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <rdfs:comment>&apos;OBO_REL:has_participant&apos; is narrower in the sense that it only relates ontological categories (concepts) that are a &apos;process&apos; (span:Process) with ontological categories that are a &apos;continuant&apos; (snap:Continuant), and broader in the sense that it relates with any participating objects not just outputs or output arguments of the subject. It is also not clear whether an output (result) actually participates in the process that generates it.</rdfs:comment>
        <owl:annotatedTarget>OBO_REL:has_participant</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_output"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    <owl:Axiom>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_output"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/has_topic -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/has_topic">
        <rdfs:label>has topic</rdfs:label>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is a &apos;Topic&apos;, or in unexpected cases an entity outside of an ontology that is a &apos;Topic&apos; or is in the role of a &apos;Topic&apos;. In EDAM, only &apos;has_topic&apos; is explicitly defined between EDAM concepts (&apos;Operation&apos; or &apos;Data&apos; &apos;has_topic&apos; &apos;Topic&apos;). The inverse, &apos;is_topic_of&apos;, is not explicitly defined.</rdfs:comment>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboInOwl:hasDefinition>&apos;A has_topic B&apos; defines for the subject A, that it has the object B as its topic (A is in the scope of a topic B).</oboInOwl:hasDefinition>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <rdfs:seeAlso>http://annotation-ontology.googlecode.com/svn/trunk/annotation-core.owl#hasTopic</rdfs:seeAlso>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/IAO_0000136&quot;</rdfs:seeAlso>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#has-quality</rdfs:seeAlso>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000298&quot;</rdfs:seeAlso>
        <rdfs:range rdf:resource="http://edamontology.org/topic_0003"/>
        <rdfs:domain>
            <owl:Class>
                <owl:unionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://edamontology.org/data_0006"/>
                    <rdf:Description rdf:about="http://edamontology.org/operation_0004"/>
                </owl:unionOf>
            </owl:Class>
        </rdfs:domain>
    </owl:ObjectProperty>
    <owl:Axiom>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/has_topic"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/is_format_of -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/is_format_of">
        <rdfs:label>is format of</rdfs:label>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboInOwl:isCyclic>false</oboInOwl:isCyclic>
        <oboInOwl:hasDefinition>&apos;A is_format_of B&apos; defines for the subject A, that it is a data format of the object B.</oboInOwl:hasDefinition>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <rdfs:comment>Subject A can either be a concept that is a &apos;Format&apos;, or in unexpected cases an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is a &apos;Format&apos; or is in the role of a &apos;Format&apos;. Object B can be any concept or entity outside of an ontology that is (or is in a role of) &apos;Data&apos;, or  an input, output, input or output argument of an &apos;Operation&apos;. In EDAM, only &apos;is_format_of&apos; is explicitly defined between EDAM concepts (&apos;Format&apos; &apos;is_format_of&apos; &apos;Data&apos;). The inverse, &apos;has_format&apos;, is not explicitly defined.</rdfs:comment>
        <oboInOwl:hasRelatedSynonym>OBO_REL:quality_of</oboInOwl:hasRelatedSynonym>
        <rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in</rdfs:seeAlso>
        <rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
        <rdfs:domain rdf:resource="http://edamontology.org/format_1915"/>
        <owl:inverseOf rdf:resource="http://edamontology.org/has_format"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <owl:annotatedTarget>OBO_REL:quality_of</owl:annotatedTarget>
        <rdfs:comment>Is defined anywhere? Not in the &apos;unknown&apos; version of RO. &apos;OBO_REL:quality_of&apos; might be seen narrower in the sense that it only relates subjects that are a &apos;quality&apos; (snap:Quality) with objects that are an &apos;independent_continuant&apos; (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_format_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/is_function_of -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/is_function_of">
        <rdfs:label>is function of</rdfs:label>
        <rdfs:comment>Subject A can either be concept that is (or is in a role of) a function, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is (or is in a role of) a function specification. Object B can be any concept or entity. Within EDAM itself, &apos;is_function_of&apos; is not used.</rdfs:comment>
        <oboInOwl:hasRelatedSynonym>OBO_REL:inheres_in</oboInOwl:hasRelatedSynonym>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboInOwl:hasDefinition>&apos;A is_function_of B&apos; defines for the subject A, that it is a function of the object B.</oboInOwl:hasDefinition>
        <oboInOwl:hasNarrowSynonym>OBO_REL:function_of</oboInOwl:hasNarrowSynonym>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <rdfs:seeAlso>http://wsio.org/is_function_of</rdfs:seeAlso>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in</rdfs:seeAlso>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <owl:inverseOf rdf:resource="http://edamontology.org/has_function"/>
        <rdfs:domain rdf:resource="http://edamontology.org/operation_0004"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <owl:annotatedTarget>OBO_REL:inheres_in</owl:annotatedTarget>
        <rdfs:comment>Is defined anywhere? Not in the &apos;unknown&apos; version of RO. &apos;OBO_REL:inheres_in&apos; is narrower in the sense that it only relates ontological categories (concepts) that are a &apos;specifically_dependent_continuant&apos; (snap:SpecificallyDependentContinuant) with ontological categories that are an &apos;independent_continuant&apos; (snap:IndependentContinuant), and broader in the sense that it relates any borne subjects not just functions.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_function_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    <owl:Axiom>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_function_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    <owl:Axiom>
        <owl:annotatedTarget>OBO_REL:function_of</owl:annotatedTarget>
        <rdfs:comment>Is defined anywhere? Not in the &apos;unknown&apos; version of RO. &apos;OBO_REL:function_of&apos; only relates subjects that are a &apos;function&apos; (snap:Function) with objects that are an &apos;independent_continuant&apos; (snap:IndependentContinuant), so for example no processes. It does not define explicitly that the subject is a function of the object.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_function_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasNarrowSynonym"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/is_identifier_of -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/is_identifier_of">
        <rdfs:label>is identifier of</rdfs:label>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <oboInOwl:isCyclic>false</oboInOwl:isCyclic>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <rdfs:comment>Subject A can either be a concept that is an &apos;Identifier&apos;, or an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is an &apos;Identifier&apos; or is in the role of an &apos;Identifier&apos;. Object B can be any concept or entity outside of an ontology. In EDAM, only &apos;is_identifier_of&apos; is explicitly defined between EDAM concepts (only &apos;Identifier&apos; &apos;is_identifier_of&apos; &apos;Data&apos;). The inverse, &apos;has_identifier&apos;, is not explicitly defined.</rdfs:comment>
        <oboInOwl:hasDefinition>&apos;A is_identifier_of B&apos; defines for the subject A, that it is an identifier of the object B.</oboInOwl:hasDefinition>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <rdfs:range rdf:resource="http://edamontology.org/data_0006"/>
        <rdfs:domain rdf:resource="http://edamontology.org/data_0842"/>
        <owl:inverseOf rdf:resource="http://edamontology.org/has_identifier"/>
    </owl:ObjectProperty>
    


    <!-- http://edamontology.org/is_input_of -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/is_input_of">
        <rdfs:label>is input of</rdfs:label>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <rdfs:seeAlso>http://wsio.org/is_input_of</rdfs:seeAlso>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboInOwl:hasRelatedSynonym>OBO_REL:participates_in</oboInOwl:hasRelatedSynonym>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000295&quot;</rdfs:seeAlso>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is or has an &apos;Operation&apos; function, or an entity outside of an ontology that has an &apos;Operation&apos; function or is an &apos;Operation&apos;. In EDAM, &apos;is_input_of&apos; is not explicitly defined between EDAM concepts, only the inverse &apos;has_input&apos;.</rdfs:comment>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboInOwl:hasDefinition>&apos;A is_input_of B&apos; defines for the subject A, that it as a necessary or actual input or input argument of the object B.</oboInOwl:hasDefinition>
        <rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
        <owl:inverseOf rdf:resource="http://edamontology.org/has_input"/>
        <rdfs:range rdf:resource="http://edamontology.org/operation_0004"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <rdfs:comment>&apos;OBO_REL:participates_in&apos; is narrower in the sense that it only relates ontological categories (concepts) that are a &apos;continuant&apos; (snap:Continuant) with ontological categories that are a &apos;process&apos; (span:Process), and broader in the sense that it relates any participating subjects not just inputs or input arguments.</rdfs:comment>
        <owl:annotatedTarget>OBO_REL:participates_in</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_input_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    <owl:Axiom>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_input_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/is_output_of -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/is_output_of">
        <rdfs:label>is output of</rdfs:label>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <rdfs:comment>Subject A can be any concept or entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated). Object B can either be a concept that is or has an &apos;Operation&apos; function, or an entity outside of an ontology that has an &apos;Operation&apos; function or is an &apos;Operation&apos;. In EDAM, &apos;is_output_of&apos; is not explicitly defined between EDAM concepts, only the inverse &apos;has_output&apos;.</rdfs:comment>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <oboInOwl:hasDefinition>&apos;A is_output_of B&apos; defines for the subject A, that it as a necessary or actual output or output argument of the object B.</oboInOwl:hasDefinition>
        <oboInOwl:hasRelatedSynonym>OBO_REL:participates_in</oboInOwl:hasRelatedSynonym>
        <rdfs:seeAlso>http://wsio.org/is_output_of</rdfs:seeAlso>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <rdfs:seeAlso>&quot;http://purl.obolibrary.org/obo/OBI_0000312&quot;</rdfs:seeAlso>
        <rdfs:domain rdf:resource="http://edamontology.org/data_0006"/>
        <owl:inverseOf rdf:resource="http://edamontology.org/has_output"/>
        <rdfs:range rdf:resource="http://edamontology.org/operation_0004"/>
    </owl:ObjectProperty>
    <owl:Axiom>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_output_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    <owl:Axiom>
        <owl:annotatedTarget>OBO_REL:participates_in</owl:annotatedTarget>
        <rdfs:comment>&apos;OBO_REL:participates_in&apos; is narrower in the sense that it only relates ontological categories (concepts) that are a &apos;continuant&apos; (snap:Continuant) with ontological categories that are a &apos;process&apos; (span:Process), and broader in the sense that it relates any participating subjects not just outputs or output arguments. It is also not clear whether an output (result) actually participates in the process that generates it.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_output_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    


    <!-- http://edamontology.org/is_topic_of -->

    <owl:ObjectProperty rdf:about="http://edamontology.org/is_topic_of">
        <rdfs:label>is topic of</rdfs:label>
        <oboInOwl:hasDefinition>&apos;A is_topic_of B&apos; defines for the subject A, that it is a topic of the object B (a topic A is the scope of B).</oboInOwl:hasDefinition>
        <oboInOwl:inSubset>relations</oboInOwl:inSubset>
        <oboInOwl:hasRelatedSynonym>OBO_REL:quality_of</oboInOwl:hasRelatedSynonym>
        <oboOther:is_reflexive>false</oboOther:is_reflexive>
        <oboInOwl:isCyclic>true</oboInOwl:isCyclic>
        <oboOther:is_anti_symmetric>false</oboOther:is_anti_symmetric>
        <rdfs:comment>Subject A can either be a concept that is a &apos;Topic&apos;, or in unexpected cases an entity outside of an ontology (or an ontology concept in a role of an entity being semantically annotated) that is a &apos;Topic&apos; or is in the role of a &apos;Topic&apos;. Object B can be any concept or entity outside of an ontology. In EDAM, &apos;is_topic_of&apos; is not explicitly defined between EDAM concepts, only the inverse &apos;has_topic&apos;.</rdfs:comment>
        <rdfs:seeAlso>http://www.loa-cnr.it/ontologies/DOLCE-Lite.owl#inherent-in</rdfs:seeAlso>
        <oboOther:is_symmetric>false</oboOther:is_symmetric>
        <oboOther:transitive_over>OBO_REL:is_a</oboOther:transitive_over>
        <oboInOwl:inSubset>edam</oboInOwl:inSubset>
        <owl:inverseOf rdf:resource="http://edamontology.org/has_topic"/>
        <rdfs:domain rdf:resource="http://edamontology.org/topic_0003"/>
        <rdfs:range>
            <owl:Class>
                <owl:unionOf rdf:parseType="Collection">
                    <rdf:Description rdf:about="http://edamontology.org/data_0006"/>
                    <rdf:Description rdf:about="http://edamontology.org/operation_0004"/>
                </owl:unionOf>
            </owl:Class>
        </rdfs:range>
    </owl:ObjectProperty>
    <owl:Axiom>
        <owl:annotatedTarget>OBO_REL:quality_of</owl:annotatedTarget>
        <rdfs:comment>Is defined anywhere? Not in the &apos;unknown&apos; version of RO. &apos;OBO_REL:quality_of&apos; might be seen narrower in the sense that it only relates subjects that are a &apos;quality&apos; (snap:Quality) with objects that are an &apos;independent_continuant&apos; (snap:IndependentContinuant), and is broader in the sense that it relates any qualities of the object.</rdfs:comment>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_topic_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;hasRelatedSynonym"/>
    </owl:Axiom>
    <owl:Axiom>
        <rdfs:comment>In very unusual cases.</rdfs:comment>
        <owl:annotatedTarget>true</owl:annotatedTarget>
        <owl:annotatedSource rdf:resource="http://edamontology.org/is_topic_of"/>
        <owl:annotatedProperty rdf:resource="&oboInOwl;isCyclic"/>
    </owl:Axiom>
    


    <!-- 
    ///////////////////////////////////////////////////////////////////////////////////////
    //
    // Classes
    //
    ///////////////////////////////////////////////////////////////////////////////////////
     -->

    
    


    <!-- http://edamontology.org/data_0005 -->

    <owl:Class rdf:about="http://edamontology.org/data_0005">
        <rdfs:label>Resource type</rdfs:label>
        <rdfs:subClassOf rdf:resource="&oboInOwl;ObsoleteClass"/>
        <obsolete_since>beta12orEarlier</obsolete_since>
        <created_in>beta12orEarlier</created_in>
        <oboInOwl:hasDefinition>A type of computational resource used in bioinformatics.</oboInOwl:hasDefinition>
        <owl:deprecated>true</owl:deprecated>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#obsolete"/>
    </owl:Class>
    

    <!-- http://edamontology.org/format_1929 -->

    <owl:Class rdf:about="http://edamontology.org/format_1929">
        <rdfs:label>FASTA</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2200"/>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2554"/>
        <created_in>beta12orEarlier</created_in>
        <oboInOwl:hasExactSynonym>FASTA format</oboInOwl:hasExactSynonym>
        <oboInOwl:hasExactSynonym>FASTA sequence format</oboInOwl:hasExactSynonym>
        <oboInOwl:hasDefinition>FASTA format including NCBI-style IDs.</oboInOwl:hasDefinition>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#edam"/>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#formats"/>
    </owl:Class>
    
    <!-- http://edamontology.org/format_2200 -->

    <owl:Class rdf:about="http://edamontology.org/format_2200">
        <rdfs:label>FASTA-like (text)</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2330"/>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_2546"/>
        <rdfs:comment>This concept may also be used for the many non-standard FASTA-like formats.</rdfs:comment>
        <rdfs:seeAlso>http://filext.com/file-extension/FASTA</rdfs:seeAlso>
        <created_in>beta12orEarlier</created_in>
        <oboInOwl:hasDefinition>A text format resembling FASTA format.</oboInOwl:hasDefinition>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#edam"/>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#formats"/>
    </owl:Class>
    
    <!-- http://edamontology.org/format_2330 -->

    <owl:Class rdf:about="http://edamontology.org/format_2330">
        <rdfs:label>Textual format</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_1915"/>
        <rdfs:seeAlso>http://filext.com/file-extension/TSV</rdfs:seeAlso>
        <rdfs:seeAlso>http://www.iana.org/assignments/media-types/text/plain</rdfs:seeAlso>
        <oboInOwl:hasDefinition>Textual format.</oboInOwl:hasDefinition>
        <rdfs:comment>Data in text format can be compressed into binary format, or can be a value of an XML element or attribute. Markup formats are not considered textual (or more precisely, not plain-textual).</rdfs:comment>
        <oboInOwl:hasExactSynonym>txt</oboInOwl:hasExactSynonym>
        <rdfs:seeAlso>http://filext.com/file-extension/TXT</rdfs:seeAlso>
        <oboInOwl:hasNarrowSynonym>Plain text</oboInOwl:hasNarrowSynonym>
        <rdfs:seeAlso>http://www.iana.org/assignments/media-types/media-types.xhtml#text</rdfs:seeAlso>
        <created_in>beta12orEarlier</created_in>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#edam"/>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#formats"/>
    </owl:Class>
    
    <!-- http://edamontology.org/format_2554 -->

    <owl:Class rdf:about="http://edamontology.org/format_2554">
        <rdfs:label>Alignment format (text)</rdfs:label>
        <rdfs:subClassOf rdf:resource="http://edamontology.org/format_1921"/>
        <oboInOwl:hasDefinition>Text format for molecular sequence alignment information.</oboInOwl:hasDefinition>
        <created_in>beta12orEarlier</created_in>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#edam"/>
        <oboInOwl:inSubset rdf:resource="&oboOther;edam#formats"/>
    </owl:Class>
    
    <!-- http://www.geneontology.org/formats/oboInOwl#ObsoleteClass -->

    <owl:Class rdf:about="&oboInOwl;ObsoleteClass">
        <rdfs:label>Obsolete concept (EDAM)</rdfs:label>
        <rdfs:subClassOf rdf:resource="&oboInOwl;ObsoleteClass"/>
        <rdfs:subClassOf rdf:resource="&owl;DeprecatedClass"/>
        <created_in>1.2</created_in>
        <rdfs:comment>Needed for conversion to the OBO format.</rdfs:comment>
        <oboInOwl:hasDefinition>An obsolete concept (redefined in EDAM).</oboInOwl:hasDefinition>
        <owl:deprecated>true</owl:deprecated>
    </owl:Class>
    


    <!-- http://www.w3.org/2002/07/owl#DeprecatedClass -->

    <owl:Class rdf:about="&owl;DeprecatedClass"/>
</rdf:RDF>



<!-- Generated by the OWL API (version 3.4.2) http://owlapi.sourceforge.net -->