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|
#!/usr/bin/env cwl-runner
{
"$graph": [
{
"class": "Workflow",
"doc": "Reverse the lines in a document, then sort those lines.",
"hints": [
{
"class": "DockerRequirement",
"dockerPull": "debian:8"
}
],
"inputs": [
{
"type": "File",
"doc": "The input file to be processed.",
"format": "https://www.iana.org/assignments/media-types/text/plain",
"default": {
"class": "File",
"location": "file:///home/stain/src/cwltool/tests/wf/hello.txt"
},
"id": "#main/input"
},
{
"type": "boolean",
"default": true,
"doc": "If true, reverse (decending) sort",
"id": "#main/reverse_sort"
}
],
"outputs": [
{
"type": "File",
"outputSource": "#main/sorted/output",
"doc": "The output with the lines reversed and sorted.",
"id": "#main/output"
}
],
"steps": [
{
"in": [
{
"source": "#main/input",
"id": "#main/rev/input"
}
],
"out": [
"#main/rev/output"
],
"run": "#revtool.cwl",
"id": "#main/rev"
},
{
"in": [
{
"source": "#main/rev/output",
"id": "#main/sorted/input"
},
{
"source": "#main/reverse_sort",
"id": "#main/sorted/reverse"
}
],
"out": [
"#main/sorted/output"
],
"run": "#sorttool.cwl",
"id": "#main/sorted"
}
],
"id": "#main",
"$namespaces": {
"iana": "https://www.iana.org/assignments/media-types/"
}
},
{
"class": "CommandLineTool",
"doc": "Reverse each line using the `rev` command",
"inputs": [
{
"type": "File",
"inputBinding": {},
"id": "#revtool.cwl/input"
}
],
"outputs": [
{
"type": "File",
"outputBinding": {
"glob": "output.txt"
},
"id": "#revtool.cwl/output"
}
],
"baseCommand": "rev",
"stdout": "output.txt",
"id": "#revtool.cwl"
},
{
"class": "CommandLineTool",
"doc": "Sort lines using the `sort` command",
"inputs": [
{
"id": "#sorttool.cwl/reverse",
"type": "boolean",
"inputBinding": {
"position": 1,
"prefix": "--reverse"
}
},
{
"id": "#sorttool.cwl/input",
"type": "File",
"inputBinding": {
"position": 2
}
}
],
"outputs": [
{
"id": "#sorttool.cwl/output",
"type": "File",
"outputBinding": {
"glob": "output.txt"
}
}
],
"baseCommand": "sort",
"stdout": "output.txt",
"id": "#sorttool.cwl"
}
],
"cwlVersion": "v1.0",
"$schemas": [
"file:///home/stain/src/cwltool/tests/wf/empty.ttl",
"file:///home/stain/src/cwltool/tests/wf/empty2.ttl"
]
}
|
