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|
#!/usr/bin/env cwl-runner
class: Workflow
cwlVersion: v1.0
requirements:
StepInputExpressionRequirement: {}
inputs:
file1: File
outputs:
val1:
type: string
outputSource: step1/echo_out
val2:
type: string
outputSource: step2/echo_out
steps:
step1:
run:
id: explicit/id
class: CommandLineTool
inputs:
name:
type: string
inputBinding: {}
outputs:
echo_out:
type: string
outputBinding:
glob: step1_out
loadContents: true
outputEval: $(self[0].contents)
echo_out_file:
type: File
outputBinding:
glob: step1_out
baseCommand: echo
stdout: step1_out
in:
name:
source: file1
valueFrom: $(self.basename)
out: [echo_out, echo_out_file]
step2:
run:
class: CommandLineTool
inputs:
name:
type: string
inputBinding: {}
outputs:
echo_out:
type: string
outputBinding:
glob: step1_out
loadContents: true
outputEval: $(self[0].contents)
baseCommand: echo
stdout: step1_out
in:
name:
source: step1/echo_out_file
valueFrom: $(self.basename)
out: [echo_out]
|
