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|
#!/usr/bin/env cwl-runner
class: CommandLineTool
cwlVersion: v1.0
requirements:
InitialWorkDirRequirement:
listing:
- entryname: inputs.txt
entry: |
$(inputs.in1.file.path)
$(inputs.in1.meta.species)
SchemaDefRequirement:
types:
- $import: ../types/recursive.yml
- $import: ../types/array.yml
- $import: ../types/singletype.yml
# - $import: ../types/singletype2.yml
inputs:
in1: ../types/recursive.yml#file_with_sample_meta
in2:
type: ../types/array.yml#study_meta_too
in3:
type: ../types/singletype.yml#simple_record
# in4:
# type: ../types/singletype2.yml#simple_record2
in4:
type: [string, ../types/recursive.yml#sample_meta]
in5:
type: Any?
outputs:
out1:
type: File
outputBinding:
glob: '*.txt'
out2:
type: ../types/array.yml#study_meta_too
outputBinding:
outputEval: $(inputs.in2)
out3: stdout
baseCommand: [echo]
arguments: [hello world]
|
