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|
#!/usr/bin/env cwl-runner
# Checks symbolic links on github
class: Workflow
cwlVersion: v1.2
inputs:
in1:
type: ../types/recursive.yml#file_with_sample_meta
in2:
type: ../types/array.yml#study_meta_too
in3:
type: ../types/singletype.yml#simple_record
in4:
type: [string, ../types/recursive.yml#sample_meta]
steps:
s1:
run: link-to-clt1.cwl
in:
in1: "#in1" # This should be normalized out
in2: in2
in3: in3
in4: in4
out: [out2]
outputs:
- id: out1
type: ../types/array.yml#study_meta_too
outputSource: "#s1/out2"
requirements:
SchemaDefRequirement:
types:
- $import: ../types/recursive.yml
- $import: ../types/array.yml
- $import: ../types/singletype.yml
- name: user_type1 # For tools/clt2.cwl
type: record
fields:
- name: prop
type: string
|
