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|
#!/usr/bin/env cwl-runner
class: Workflow
cwlVersion: v1.0
requirements:
ScatterFeatureRequirement: {}
MultipleInputFeatureRequirement: {}
StepInputExpressionRequirement: {}
inputs:
letters0:
type: [string, int]
default: "a0"
letters1:
type: string[]
default: ["a1", "b1"]
letters2:
type: [string, int]
default: "a2"
letters3:
type: string[]
default: ["a3", "b3"]
letters4:
type: int
default: 4
letters5:
type: string[]
default: ["a5", "b5", "c5"]
outputs:
all:
type: File[]
outputSource: cat/txt
steps:
echo_v:
run: echo.cwl
in: {}
out: [txt]
echo_w:
run: echo.cwl
in:
echo_in: letters0
out: [txt, other]
echo_x:
run: echo.cwl
scatter: echo_in
in:
echo_in:
source: [letters1, letters2]
linkMerge: merge_nested
out: [txt]
echo_y:
run: echo.cwl
scatter: echo_in
in:
echo_in:
source: [letters3, letters4]
linkMerge: merge_flattened
out: [txt]
echo_z:
run: echo.cwl
in:
echo_in:
source: letters5
valueFrom: "special value parsed in valueFrom"
out: [txt]
cat:
run: cat.cwl
in:
cat_in:
source: [echo_w/txt, echo_x/txt, echo_y/txt, echo_z/txt, letters0]
linkMerge: merge_flattened
out: [txt]
|
