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|
#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: CommandLineTool
id: "seqtk_seq"
doc: "Convert to FASTA (seqtk)"
inputs:
- id: input1
type: File
inputBinding:
position: 1
prefix: "-a"
outputs:
- id: output1
type: File
outputBinding:
glob: out
baseCommand: ["seqtk", "seq"]
arguments: []
stdout: out
hints:
SoftwareRequirement:
packages:
- package: seqtk_seq
version:
- '1.2'
specs:
- https://anaconda.org/bioconda/seqtk
- https://packages.debian.org/sid/seqtk
|
