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import json
import os
import pickle
import sys
import urllib
from collections.abc import Generator
from pathlib import Path
from typing import IO, Any, cast
import arcp
import pytest
from rdflib import Graph, Namespace, URIRef
from rdflib.namespace import DC, DCTERMS, RDF
from rdflib.term import Literal
import cwltool.cwlprov as provenance
from cwltool.cwlprov import provenance_constants
from cwltool.cwlprov.ro import ResearchObject
from cwltool.cwlprov.writablebagfile import close_ro, write_bag_file
from cwltool.main import main
from cwltool.stdfsaccess import StdFsAccess
from .util import get_data, needs_docker, working_directory
# RDF namespaces we'll query for later
ORE = Namespace("http://www.openarchives.org/ore/terms/")
PROV = Namespace("http://www.w3.org/ns/prov#")
RO = Namespace("http://purl.org/wf4ever/ro#")
WFDESC = Namespace("http://purl.org/wf4ever/wfdesc#")
WFPROV = Namespace("http://purl.org/wf4ever/wfprov#")
SCHEMA = Namespace("http://schema.org/")
CWLPROV = Namespace("https://w3id.org/cwl/prov#")
OA = Namespace("http://www.w3.org/ns/oa#")
FOAF = Namespace("http://xmlns.com/foaf/0.1/")
TEST_ORCID = "https://orcid.org/0000-0003-4862-3349"
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