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"""Tests --validation."""
import io
import logging
import re
from .util import get_data, get_main_output
def test_validate_graph_with_no_default() -> None:
"""Ensure that --validate works on $graph docs that lack a main/#main."""
exit_code, stdout, stderr = get_main_output(
["--validate", get_data("tests/wf/packed_no_main.cwl")]
)
assert exit_code == 0
assert "packed_no_main.cwl#echo is valid CWL" in stdout
assert "packed_no_main.cwl#cat is valid CWL" in stdout
assert "packed_no_main.cwl#collision is valid CWL" in stdout
assert "tests/wf/packed_no_main.cwl is valid CWL" in stdout
def test_validate_with_valid_input_object() -> None:
"""Ensure that --validate with a valid input object."""
exit_code, stdout, stderr = get_main_output(
[
"--validate",
get_data("tests/wf/1st-workflow.cwl"),
"--inp",
get_data("tests/wf/1st-workflow.cwl"),
"--ex",
"FOO",
]
)
assert exit_code == 0
assert "tests/wf/1st-workflow.cwl is valid CWL. No errors detected in the inputs." in stdout
def test_validate_with_invalid_input_object() -> None:
"""Ensure that --validate with an invalid input object."""
exit_code, stdout, stderr = get_main_output(
[
"--validate",
get_data("tests/wf/1st-workflow.cwl"),
get_data("tests/wf/1st-workflow_bad_inputs.yml"),
]
)
assert exit_code == 1
stdout = re.sub(r"\s\s+", " ", stdout)
assert "Invalid job input record" in stdout
assert (
"tests/wf/1st-workflow_bad_inputs.yml:2:1: * the 'ex' field is not "
"valid because the value is not string" in stdout
)
assert (
"tests/wf/1st-workflow_bad_inputs.yml:1:1: * the 'inp' field is not "
"valid because is not a dict. Expected a File object." in stdout
)
def test_validate_quiet() -> None:
"""Ensure that --validate --quiet prints the correct amount of information."""
exit_code, stdout, stderr = get_main_output(
[
"--validate",
"--quiet",
get_data("tests/CometAdapter.cwl"),
]
)
assert exit_code == 0
stdout = re.sub(r"\s\s+", " ", stdout)
assert "INFO" not in stdout
assert "INFO" not in stderr
assert "tests/CometAdapter.cwl:10:3: object id" in stdout
assert "tests/CometAdapter.cwl#out' previously defined" in stdout
def test_validate_no_warnings() -> None:
"""Ensure that --validate --no-warnings doesn't print any warnings."""
exit_code, stdout, stderr = get_main_output(
[
"--validate",
"--no-warnings",
get_data("tests/CometAdapter.cwl"),
]
)
assert exit_code == 0
stdout = re.sub(r"\s\s+", " ", stdout)
stderr = re.sub(r"\s\s+", " ", stderr)
assert "INFO" not in stdout
assert "INFO" not in stderr
assert "WARNING" not in stdout
assert "WARNING" not in stderr
assert "tests/CometAdapter.cwl:9:3: object id" not in stdout
assert "tests/CometAdapter.cwl:9:3: object id" not in stderr
assert "tests/CometAdapter.cwl#out' previously defined" not in stdout
assert "tests/CometAdapter.cwl#out' previously defined" not in stderr
def test_validate_custom_logger() -> None:
"""Custom log handling test."""
custom_log = io.StringIO()
handler = logging.StreamHandler(custom_log)
handler.setLevel(logging.DEBUG)
exit_code, stdout, stderr = get_main_output(
[
"--validate",
get_data("tests/CometAdapter.cwl"),
],
logger_handler=handler,
)
custom_log_text = custom_log.getvalue()
assert exit_code == 0
custom_log_text = re.sub(r"\s\s+", " ", custom_log_text)
stdout = re.sub(r"\s\s+", " ", stdout)
stderr = re.sub(r"\s\s+", " ", stderr)
assert "INFO" not in stdout
assert "INFO" not in stderr
assert "INFO" in custom_log_text
assert "WARNING" not in stdout
assert "WARNING" not in stderr
assert "WARNING" in custom_log_text
assert "tests/CometAdapter.cwl:10:3: object id" not in stdout
assert "tests/CometAdapter.cwl:10:3: object id" not in stderr
assert "tests/CometAdapter.cwl:10:3: object id" in custom_log_text
assert "tests/CometAdapter.cwl#out' previously defined" not in stdout
assert "tests/CometAdapter.cwl#out' previously defined" not in stderr
assert "tests/CometAdapter.cwl#out' previously defined" in custom_log_text
|
