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# THIS FILE IS PART OF THE CYLC WORKFLOW ENGINE.
# Copyright (C) NIWA & British Crown (Met Office) & Contributors.
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
import asyncio
import logging
from typing import (
Any as Fixture,
Callable,
)
import pytest
from cylc.flow.commands import (
force_trigger_tasks,
hold,
reload_workflow,
resume,
run_cmd,
set_prereqs_and_outputs,
)
from cylc.flow.cycling.integer import IntegerPoint
from cylc.flow.scheduler import Scheduler
from cylc.flow.task_state import (
TASK_STATUS_FAILED,
TASK_STATUS_RUNNING,
TASK_STATUS_SUBMITTED,
TASK_STATUS_SUCCEEDED,
TASK_STATUS_WAITING,
)
async def test_workflow_paused_simple(
one_conf, flow, scheduler, run, complete
):
"""It should run triggered tasks even if the workflow is paused."""
schd: Scheduler = scheduler(flow(one_conf), paused_start=True)
async with run(schd):
await run_cmd(force_trigger_tasks(schd, ['1/one'], ['1']))
await complete(schd, '1/one', allow_paused=True, timeout=1)
async def test_workflow_paused_queues(
flow: 'Fixture',
scheduler: 'Fixture',
start: 'Fixture',
capture_submission: 'Fixture',
log_filter: Callable
):
"""
Test manual triggering when the workflow is paused.
The usual queue limiting behaviour is expected.
https://github.com/cylc/cylc-flow/issues/6192
"""
id_ = flow({
'scheduling': {
'queues': {
'default': {
'limit': 1,
},
},
'graph': {
'R1': '''
a => x & y & z
''',
},
},
})
schd = scheduler(id_, paused_start=True)
# start the scheduler (but don't set the main loop running)
async with start(schd):
# capture task submissions (prevents real submissions)
submitted_tasks = capture_submission(schd)
# paused at start-up so no tasks should be submitted
assert len(submitted_tasks) == 0
# manually trigger 1/x - it should be submitted
await run_cmd(force_trigger_tasks(schd, ['1/x'], ["1"]))
schd.release_tasks_to_run()
assert len(submitted_tasks) == 1
# manually trigger 1/y - it should be queued but not submitted
# (queue limit reached)
await run_cmd(force_trigger_tasks(schd, ['1/y'], ["1"]))
schd.release_tasks_to_run()
assert len(submitted_tasks) == 1
# manually trigger 1/y again - it should be submitted
# (triggering a queued task runs it)
await run_cmd(force_trigger_tasks(schd, ['1/y'], ["1"]))
schd.release_tasks_to_run()
assert len(submitted_tasks) == 2
# manually trigger 1/y yet again - the trigger should be ignored
# (task already active)
await run_cmd(force_trigger_tasks(schd, ['1/y'], ["1"]))
schd.release_tasks_to_run()
assert len(submitted_tasks) == 2
assert log_filter(
level=logging.WARNING,
contains="Job already in process - ignoring"
)
async def test_trigger_group_whilst_paused(flow, scheduler, run, complete):
"""Only group start tasks should run if the group is triggered whilst
the scheduler is paused.
Group start tasks have only off-group dependencies.
Others (with in-group dependencies) should run as normal when their
prerequisites are satisfied once the workflow is resumed.
"""
id_ = flow('a => b => c => d')
schd = scheduler(id_, paused_start=True)
async with run(schd):
# trigger the chain
await run_cmd(force_trigger_tasks(schd, ['1/a'], []))
# 1/a should run whilst the workflow is paused (group start-task)
await complete(schd, '1/a', allow_paused=True, timeout=1)
# 1/b should *not* run whilst the workflow is paused
with pytest.raises(AssertionError):
await complete(schd, '1/b', allow_paused=True, timeout=2)
b = schd.pool._get_task_by_id('1/b')
assert b.state.status == TASK_STATUS_WAITING
# 1/b and 1/c should run once the workflow is resumed
await run_cmd(resume(schd))
await complete(schd, '1/c')
async def test_trigger_group(
flow, scheduler, run, complete, log_filter
):
"""Test trigger of a sub-graph of future, then past, tasks.
It should satisfy off-group task and xtrigger prerequisites automatically.
"""
cfg = {
'scheduling': {
'xtriggers': {
'xr': 'xrandom(0)' # never satisfied
},
'special tasks': {
'external-trigger': 'xt(cheese)'
},
'graph': {
'R1': """
# upstream:
x => a
# sub-graph for group trigger:
a => b & c & xt => d
# downstream:
d => e => y
# off-group prerequisites:
@xr => x # stop the flow starting
@xr => c # off-group xtrigger prerequisite
@xr => off => b # off-group task prerequisite
# (plus task xt has a push external trigger)
# stop the flow from ending without intervention:
@xr => y
"""
},
},
}
id_ = flow(cfg)
schd = scheduler(id_, paused_start=False)
async with run(schd, level=logging.INFO) as log:
# Trigger the group ahead of the flow.
# It should run the group and flow on to downstream task e.
await run_cmd(
force_trigger_tasks(schd, ['1/a', '1/b', '1/c', '1/d', '1/xt'], [])
)
await complete(schd, '1/e')
# It should satisfy off-group prerequisites.
assert log_filter(
regex="1/c:waiting.*prerequisite force-satisfied: xr = xrandom")
assert log_filter(
regex="1/b:waiting.*prerequisite force-satisfied: 1/off:succeeded")
assert log_filter(
regex="1/a:waiting.*prerequisite force-satisfied: 1/x:succeeded")
assert log_filter(
regex='1/xt:waiting.*external trigger force-satisfied: "cheese"')
log.clear()
# Trigger the group again, now as past tasks, in the same flow.
# It should erase flow 1 history to allow the rerun.
# It should not flow on to e, which already ran in flow 1.
# Create an active task that needs removing, to test that.
await run_cmd(
set_prereqs_and_outputs(schd, ['1/c'], [], [], ['all'])
)
await run_cmd(
force_trigger_tasks(schd, ['1/a', '1/b', '1/c', '1/d', '1/xt'], [])
)
await complete(schd, '1/d')
assert log_filter(
contains=(
"Removed tasks: 1/a (flows=1), 1/b (flows=1),"
" 1/c (flows=1), 1/d (flows=1), 1/xt (flows=1)"
)
)
assert log_filter(
regex="1/c:waiting.*prerequisite force-satisfied: xr = xrandom")
assert log_filter(
regex="1/b:waiting.*prerequisite force-satisfied: 1/off:succeeded")
assert log_filter(
regex="1/a:waiting.*prerequisite force-satisfied: 1/x:succeeded")
assert log_filter(
regex='1/xt:waiting.*external trigger force-satisfied: "cheese"')
log.clear()
# Trigger the group again, as past tasks, in a new flow.
# It should flow on to task e again, in flow 2.
await run_cmd(
force_trigger_tasks(
schd, ['1/a', '1/b', '1/c', '1/d', '1/xt'], ['new'])
)
await complete(schd, '1/e')
assert log_filter(
regex=(
r"1/c\(flows=2\):waiting.*prerequisite"
r" force-satisfied: xr = xrandom"
)
)
assert log_filter(
regex=(
r"1/b\(flows=2\):waiting.*prerequisite"
r" force-satisfied: 1/off:succeeded"
)
)
assert log_filter(
regex=(
r"1/a\(flows=2\):waiting.*prerequisite"
r" force-satisfied: 1/x:succeeded"
)
)
assert log_filter(
regex=(
r"1/xt\(flows=2\):waiting.*external trigger"
r' force-satisfied: "cheese"'
)
)
# Task d (in the group) should have run 3 times.
assert log_filter(
contains="[1/d/03(flows=2):running] => succeeded"
)
# Task e (downstream of the group) only twice (once in each flow).
assert log_filter(
contains="[1/e/02(flows=2):running] => succeeded"
)
async def test_trigger_active_task_in_group(
flow,
scheduler,
run,
complete,
log_filter,
reflog,
):
"""It should remove (and kill) active tasks that are not group start tasks.
The workflow `a => b => c` starts out like this:
* a (succeeded, n=1)
* b (running, n=0)
* c (waiting, n=1)
Then we reload to add the dependency `d => b` and trigger a, b & c.
* a - should be removed and re-spawned.
* b - should be removed and re-spawned with `a => b` unsatisfied but
`d => b` force-satisfied.
* c - should be left alone.
See point (4):
https://github.com/cylc/cylc-admin/blob/master/docs/proposal-group-trigger.md#details
"""
conf = {
'scheduling': {
'graph': {'R1': 'a => b => c'},
},
}
id_ = flow(conf)
schd = scheduler(id_, paused_start=False)
async with run(schd):
# capture triggering information
triggers = reflog(schd)
# run until 1/a:succeeded
await complete(schd, '1/a')
# check 1/b prereqs
b_1 = schd.pool.get_task(IntegerPoint('1'), 'b')
assert [
(prereq.task, is_satisfied)
for condition in b_1.state.prerequisites
for prereq, is_satisfied in condition.items()
] == [
# 1/b has a single prereq, it has been satisfied normally
('a', 'satisfied naturally'),
]
# submit 1/b
schd.submit_task_jobs([b_1])
# reload the workflow adding the dependency "d => b"
conf['scheduling']['graph']['R1'] += '\nd => b'
flow(conf, workflow_id=id_)
await run_cmd(reload_workflow(schd))
# trigger the chain a => b => c
await run_cmd(force_trigger_tasks(schd, ['1/a', '1/b', '1/c'], []))
# active task 1/b should be killed
assert log_filter(
contains=(
'[1/b/01:running] removed from the n=0 window: request'
' - active job orphaned'
)
)
# check 1/b prereqs
b_1 = schd.pool.get_task(IntegerPoint('1'), 'b') # ret reloaded task
assert [
(prereq.task, is_satisfied)
for condition in b_1.state.prerequisites
for prereq, is_satisfied in condition.items()
] == [
# in-group prereq has been reset
('a', False),
# off-group prereq has been "force satisfied"
('d', 'force satisfied'),
]
# the workflow should run the chain a => b => c as instructed
await complete(schd, '1/c')
assert triggers == {
('1/a', None),
('1/b', ('1/a',)), # original run
('1/b', ('1/a', '1/d')), # force-triggered run
('1/c', ('1/b',)),
}
async def test_trigger_group_in_flow(
flow,
scheduler,
run,
complete,
reflog,
db_select,
):
"""It should remove tasks from the triggered flow(s).
Tests the following statement from the proposal:
> Use the same flow numbers, as determined by the trigger command in the
> usual way, throughout the operation
>
> -- https://cylc.github.io/cylc-admin/proposal-group-trigger.html#details
"""
id_ = flow({
'scheduling': {
'graph': {
'R1': 'a => b => c => d'
}
}
})
schd = scheduler(id_, paused_start=False)
async with run(schd):
# prevent shutdown after 1/c completes
await run_cmd(hold(schd, ['1/d']))
# run the chain, merge in flow "2" part way through
triggers = reflog(schd, flow_nums=True)
await complete(schd, '1/a')
await run_cmd(force_trigger_tasks(schd, ['1/b'], ['2']))
await complete(schd, '1/c')
assert triggers == {
# (task, flow_nums, triggered_off_of)
('1/a', '[1]', None),
('1/b', '[1, 2]', ('1/a',)), # flow "2" merged in
('1/c', '[1, 2]', ('1/b',)), # flow "2" merged in
}
# re-run the chain in flow "2"
triggers = reflog(schd, flow_nums=True)
await run_cmd(force_trigger_tasks(schd, ['1/a', '1/b', '1/c'], ['2']))
await complete(schd, '1/c', timeout=10)
assert triggers == {
# (task, flow_nums, triggered_off_of)
('1/a', '[2]', None),
('1/b', '[2]', ('1/a',)),
('1/c', '[2]', ('1/b',)),
}
# ensure that flow "2" was removed from the tasks in the original run
# by the group-trigger
assert set(db_select(
schd,
True,
'task_outputs',
'name',
'flow_nums',
)) == {
# original run
('a', '[1]'),
('b', '[1]'), # flow "2" has been removed
('c', '[1]'), # flow "2" has been removed
('d', '[1, 2]'),
# subsequent run
('a', '[2]'),
('b', '[2]'),
('c', '[2]'),
}
async def test_trigger_n0_tasks(
flow,
scheduler,
run,
complete,
db_select,
):
"""It should trigger tasks within their flow if available, else all flows.
* N=0 tasks already have a flow assigned.
* N!=0 tasks do not yet have a flow assigned.
When we are triggering n!=0 tasks, there is no appropriate flow to run them
in (this would involve flow merge prediction), so we default to all active
flows as the most/only sensible default.
Before group trigger, we triggered tasks independently, i.e. we assumed
there were no dependencies between the tasks and ran them all
simultaneously. With the group trigger extension, we enhanced trigger to
make it aware of interdependent tasks.
Triggering independent tasks (pre group-trigger behaviour):
* If we trigger a n=0 task, we leave it in the flow it is already in.
* If we trigger a n!=0 task, we default to all active flows.
Triggering interdependent tasks (group trigger extension):
If the list of tasks being triggered contains any interdependent tasks,
we treat these interdependent tasks as a group.
* If we trigger a group which contains n=0 tasks, the whole group should
be triggered using the set of flows possessed by these n=0 tasks.
* If we trigger a group which does not contain n=0 tasks, we default to
all active flows.
"""
id_ = flow({
'scheduling': {
'graph': {
'R1': '''
# group 1 (we will trigger a, b & c)
a => b => c => z
# group 2 (we will trigger e, f & g)
e => f => g => z
# group 3 (we will trigger y)
x => y => z
'''
}
}
})
schd = scheduler(id_, paused_start=False)
async with run(schd):
# cylc hold 1/x
await run_cmd(hold(schd, ['1/x']))
# group 1: spawn n>0 tasks into flows 2 & 3
await run_cmd(
set_prereqs_and_outputs(schd, ['1/b'], ['2'], None, ['all'])
)
await run_cmd(
set_prereqs_and_outputs(schd, ['1/c'], ['3'], None, ['all'])
)
# group 2: spawn n>0 tasks into flows 4 & 5
await run_cmd(
set_prereqs_and_outputs(schd, ['1/f'], ['4'], None, ['all'])
)
await run_cmd(
set_prereqs_and_outputs(schd, ['1/g'], ['5'], None, ['all'])
)
# trigger all three groups of tasks
await run_cmd(
force_trigger_tasks(
schd, ['1/a', '1/b', '1/c', '1/e', '1/f', '1/g', '1/y'], []
)
)
await complete(
schd, '1/a', '1/b', '1/c', '1/e', '1/f', '1/g', '1/y', '1/z'
)
assert set(db_select(
schd,
True,
'task_outputs',
'name',
'flow_nums',
)) == {
# junk entries inserted on spawn/set
('a', '[1]'), # initial flow spawned on startup
('b', '[]'), # created by "cylc set"
('c', '[]'), # created by "cylc set"
('e', '[1]'), # initial flow spawned on startup
('f', '[]'), # created by "cylc set"
('g', '[]'), # created by "cylc set"
('x', '[1]'), # initial flow spawned on startup
# group 1: contained tasks in flows 1, 2 & 3
('a', '[1, 2, 3]'),
('b', '[1, 2, 3]'),
('c', '[1, 2, 3]'),
# group 2: contained tasks in flows 1, 4 & 5
('e', '[1, 4, 5]'),
('f', '[1, 4, 5]'),
('g', '[1, 4, 5]'),
# group 3: contained tasks in flows None
('y', '[1, 2, 3, 4, 5]'),
# downstream task
('z', '[1, 2, 3, 4, 5]'),
}
async def test_replay_outputs(flow, scheduler, start, complete, log_filter):
"""Triggered group start tasks re-emit (kind of) earlier outputs.
https://github.com/cylc/cylc-flow/issues/6858
Example graph:
a:started => b => end
k:kustom => l => end
k:kustom => offg
If I trigger a, b, k, l AFTER a:started and k:kustom have completed:
cylc trigger workflow //1/a //1/b //1/k //1/l
Then I should expect outputs `k:kustom` and `a:started` to be re-used
to satify b and l in the triggered flow, but NOT off-group task offg.
"""
msg_prereq = '[1/{}:waiting(runahead)] prerequisite force-satisfied: 1/{}'
msg_spawned = "[1/{}:waiting(runahead)] => waiting"
msg_removed = "Removed tasks: 1/{}"
wid = flow({
'scheduling': {
'graph': {
'R1': """
a:started => b => end
k:kustom => l => end
k:kustom => offg
"""
}
},
'runtime': {
'a': {},
'k': {
'outputs': {'kustom': 'custom message'}
}
}
})
schd = scheduler(wid, paused_start=True)
async with start(schd):
# Set initial tasks a and k to "running" so they are recognized as
# live during the forthcoming trigger operation.
# Complete the a:started and k:kustom outputs.
await run_cmd(
set_prereqs_and_outputs(schd, ['1/a'], ['1'], ['started'], None)
)
await run_cmd(
set_prereqs_and_outputs(schd, ['1/k'], ['1'], ['kustom'], None)
)
# It should spawn b, l, and offg.
for task in ['b', 'l', 'offg']:
assert log_filter(contains=msg_spawned.format(task))
# Set a and k as running so they're recognized as live start tasks
# by the trigger operation.
for itask in schd.pool.get_tasks():
itask.state_reset(TASK_STATUS_RUNNING)
# Now trigger the group.
await run_cmd(
force_trigger_tasks(schd, ['1/a', '1/b', '1/k', '1/l'], [])
)
# It should remove b and l (in-group tasks)
for task in ['b', 'l']:
assert log_filter(contains=msg_removed.format(task))
# But they will be respawned immediately by re-satisfying dependence
# on the earlier outputs of a and k for in-group tasks:
assert log_filter(contains=msg_prereq.format('b', 'a:started'))
assert log_filter(contains=msg_prereq.format('l', 'k:custom message'))
# But not for the off-group task offg:
assert not log_filter(
contains=msg_prereq.format('offg', 'k:custom message'))
async def test_trigger_with_sequential_task(flow, scheduler, run, log_filter):
"""It should trigger a failed sequential task.
See https://github.com/cylc/cylc-flow/issues/6911
"""
id_ = flow({
'scheduling': {
'initial cycle point': '1',
'final cycle point': '2',
'cycling mode': 'integer',
'special tasks': {
'sequential': 'foo',
},
'graph': {
'R1': 'install => foo',
'P1': 'foo',
},
},
'runtime': {
'foo': {
'simulation': {
'fail cycle points': '2',
},
},
},
})
schd = scheduler(id_, paused_start=False)
async with run(schd):
# wait for 2/foo:failed
async with asyncio.timeout(5):
while True:
itask = schd.pool._get_task_by_id('2/foo')
if itask and itask.state.outputs.is_message_complete('failed'):
break
await asyncio.sleep(0)
# re-trigger 2/foo
await run_cmd(
force_trigger_tasks(
schd, ['2/foo'], []
)
)
# it should re-run
async with asyncio.timeout(5):
while True:
if log_filter(contains='[2/foo/02:running] (received)failed'):
break
await asyncio.sleep(0)
async def test_trigger_with_task_selector(flow, scheduler, start, monkeypatch):
"""Test task matching with the trigger command.
This test is intended to extend the other integration tests for ID matching
with a real use case to ensure the code in cylc.flow.commands
(which parses and standardises IDs) is working correctly.
"""
id_ = flow({
'scheduling': {
'graph': {
'R1': 'a & b & c & d & e & f & g'
}
}
})
schd: Scheduler = scheduler(id_)
async with start(schd):
trigger_calls = []
def _force_trigger_tasks(_schd, ids, *_, **__):
trigger_calls.append(
{id_.relative_id_with_selectors for id_ in ids}
)
monkeypatch.setattr(
'cylc.flow.commands._force_trigger_tasks', _force_trigger_tasks
)
schd.pool._get_task_by_id('1/a').state_reset(TASK_STATUS_SUBMITTED)
schd.pool._get_task_by_id('1/b').state_reset(TASK_STATUS_RUNNING)
schd.pool._get_task_by_id('1/c').state_reset(TASK_STATUS_SUCCEEDED)
schd.pool._get_task_by_id('1/d').state_reset(TASK_STATUS_FAILED)
await run_cmd(force_trigger_tasks(schd, ['*:submitted'], []))
assert trigger_calls == [{'1/a'}]
trigger_calls.clear()
await run_cmd(force_trigger_tasks(schd, ['*:running'], []))
assert trigger_calls == [{'1/b'}]
trigger_calls.clear()
await run_cmd(force_trigger_tasks(schd, ['*:succeeded'], []))
assert trigger_calls == [{'1/c'}]
trigger_calls.clear()
await run_cmd(force_trigger_tasks(schd, ['*:failed'], []))
assert trigger_calls == [{'1/d'}]
trigger_calls.clear()
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