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Source: cyvcf2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>,
Liubov Chuprikova <chuprikovalv@gmail.com>,
Nilesh Patra <npatra974@gmail.com>
Section: science
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
zlib1g-dev,
cython3,
python3-setuptools,
python3-all-dev,
python3-numpy,
python3-coloredlogs,
python3-click,
python3-nose,
libssl-dev,
libcurl4-gnutls-dev|libcurl4-openssl-dev,
libhts-dev,
libbz2-dev,
help2man <!nodoc>
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/cyvcf2
Vcs-Git: https://salsa.debian.org/med-team/cyvcf2.git
Homepage: https://github.com/brentp/cyvcf2
Rules-Requires-Root: no
Package: python3-cyvcf2
Architecture: any
Section: python
Depends: ${python3:Depends},
${misc:Depends},
${shlibs:Depends},
python3-coloredlogs,
python3-click
Description: VCF parser based on htslib (Python 3)
This modules allows fast parsing of VCF and BCF including region-queries
with Python. This is essential for efficient analyses of nucleotide
variation with Python on high-throughput sequencing data.
.
cyvcf2 is a cython wrapper around htslib. Attributes like
variant.gt_ref_depths return a numpy array directly so they are
immediately ready for downstream use.
.
This package installs the library for Python 3.
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