File: Dockerfile.alpine.test

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cyvcf2 0.32.0-1
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ARG PYTHON_VERSION=alpine 

FROM python:${PYTHON_VERSION}

WORKDIR /workspace

RUN apk add --no-cache build-base autoconf automake git xz-dev curl-dev libdeflate-dev bzip2-dev

COPY . .

RUN pip install -r requirements.txt && pip install pytest pytest-cov

# build cyvcf2
RUN CYVCF2_HTSLIB_CONFIGURE_OPTIONS="--enable-libcurl --enable-s3 --enable-lzma --enable-bz2 --with-libdeflate" \
    CYTHONIZE=1 python setup.py build_ext -i