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DEST_DIR = ~/bin
CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
LDLIBS += -lm
ALL = daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex
all: $(ALL)
daligner: LDLIBS += -lpthread
daligner: daligner.c filter.c filter.h align.c align.h DB.c DB.h QV.c QV.h
HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h
LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h
LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h
LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h
LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h
LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h
LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h
LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h
LAupgrade.Dec.31.2014: LAupgrade.Dec.31.2014.c align.c align.h DB.c DB.h QV.c QV.h
LAindex: LAindex.c align.c align.h DB.c DB.h QV.c QV.h
clean:
rm -f $(ALL)
rm -fr *.dSYM
rm -f LAupgrade.Dec.31.2014
rm -f daligner.tar.gz
install:
install -d $(DESTDIR)/usr/bin
install $(ALL) $(DESTDIR)/usr/bin
package:
make clean
tar -zcf daligner.tar.gz README.md Makefile *.h *.c
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