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Source: damapper
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Shayan Doust <hello@shayandoust.me>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13)
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/damapper
Vcs-Git: https://salsa.debian.org/med-team/damapper.git
Homepage: https://github.com/thegenemyers/DAMAPPER
Rules-Requires-Root: no
Package: damapper
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Description: long read to reference genome mapping tool
Recognised as the Damapper Library, this is a long read to reference
genome mapping command line tool.
.
For a given reference database 'X' and read block 'Y', damapper produces
the single file 'Y.X.las'. Each output file is sorted in order of the
A-reads, and if a match is a chain of local alignments, then the LA's in
the chain occur in increasing order of A-coordinates.
.
HPC.damapper writes a UNIX shell script to the standard output that maps
every read in blocks <first> to <last> of database <reads> to a
reference sequence <ref>. If <last> is missing then only the single
block <first> is mapped, and if <first> is also missing then all blocks
of the database are mapped.
.
This package contains the damapper and HPC.damapper binaries.
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