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#example1.dawg
# An Ape Tree
# branch lengths are the expected number of substitutions along that branch
Tree = (Hylobates:0.036079,(Pongo:0.033636,(Gorilla:0.017147,
(Pan:0.019268,Homo:0.011927):0.008386):0.006124):0.015057);
#Size of the sequence to be simulated
Length = 800
#Use a full GTR model
Model = "GTR"
#Rates of substitution: AC,AG,AT,CG,CT,GT
Params = {1.5, 3.0, 0.9, 1.2, 2.5, 1.0}
#Nucleotide frequencies: A,C,G,T
Freqs = {0.20, 0.30, 0.30, 0.20}
#Number of datasets to return
Reps = 10
#Output information
File = "example1.nex"
Format = "Nexus"
Out.Block.After =
"""
Begin Paup;
hsearch;
End;
"""
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