File: example3.dawg

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#example3.dawg

Tree   = ((A:0.1,B:0.1)C:0.1, (D:0.1)E:0.1);
Length = 300

Model = "K2P"
Params = {10,1}

#use G+I model
Gamma = 1
Iota = 0.1

# rate of insertion and deletion formation
# 1 indel on average for every 10 substitutions
# deletions more common than insertions
Lambda = { 0.04, 0.06 } 

# Use the user defined gap model for each
GapModel = {"NB", "NB"}

GapParams =
{
    {1, 0.5}, #insertion model
    {2, 0.5}  #deletion model
}