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<body>
<h1 class="title toc-ignore">Implementing a new backend</h1>
<h4 class="author">Hadley Wickham, Kirill Müller</h4>
<p>The goal of this document is to help you implement a new backend for
DBI.</p>
<p>If you are writing a package that connects a database to R, I highly
recommend that you make it DBI compatible because it makes your life
easier by spelling out exactly what you need to do. The consistent
interface provided by DBI makes it easier for you to implement the
package (because you have fewer arbitrary choices to make), and easier
for your users (because it follows a familiar pattern). In addition, the
<code>DBItest</code> package provides test cases which you can easily
incorporate in your package.</p>
<p>I’ll illustrate the process using a fictional database called
Kazam.</p>
<div id="getting-started" class="section level2">
<h2>Getting started</h2>
<p>Start by creating a package. It’s up to you what to call the package,
but following the existing pattern of <code>RSQLite</code>,
<code>RMySQL</code>, <code>RPostgres</code> and <code>ROracle</code>
will make it easier for people to find it. For this example, I’ll call
my package <code>RKazam</code>.</p>
<p>A ready-to-use template package is available at <a href="https://github.com/r-dbi/RKazam/" class="uri">https://github.com/r-dbi/RKazam/</a>. You can start by
creating a new GitHub repository from this template, or by copying the
package code. Rename “Kazam” to your desired name everywhere. The
template package already contains dummy implementations for all classes
and methods.</p>
<p>If you chose to create the package manually, make sure to include in
your <code>DESCRIPTION</code>:</p>
<div class="sourceCode" id="cb1"><pre class="sourceCode yaml"><code class="sourceCode yaml"><span id="cb1-1"><a href="#cb1-1" tabindex="-1"></a><span class="fu">Imports</span><span class="kw">:</span></span>
<span id="cb1-2"><a href="#cb1-2" tabindex="-1"></a><span class="at"> DBI (>= 0.3.0),</span></span>
<span id="cb1-3"><a href="#cb1-3" tabindex="-1"></a><span class="at"> methods</span></span>
<span id="cb1-4"><a href="#cb1-4" tabindex="-1"></a><span class="fu">Suggests</span><span class="kw">:</span></span>
<span id="cb1-5"><a href="#cb1-5" tabindex="-1"></a><span class="at"> DBItest, testthat</span></span></code></pre></div>
<p>Importing <code>DBI</code> is fine, because your users are not
supposed to <em>attach</em> your package anyway; the preferred method is
to attach <code>DBI</code> and use explicit qualification via
<code>::</code> to access the driver in your package (which needs to be
done only once).</p>
</div>
<div id="testing" class="section level2">
<h2>Testing</h2>
<p>Why testing at this early stage? Because testing should be an
integral part of the software development cycle. Test right from the
start, add automated tests as you go, finish faster (because tests are
automated) while maintaining superb code quality (because tests also
check corner cases that you might not be aware of). Don’t worry: if some
test cases are difficult or impossible to satisfy, or take too long to
run, you can just turn them off.</p>
<p>Take the time now to head over to the <code>DBItest</code> vignette
at <code>vignette("test", package = "DBItest")</code>. You will find a
vast amount of ready-to-use test cases that will help you in the process
of implementing your new DBI backend.</p>
<p>Add custom tests that are not covered by <code>DBItest</code> at your
discretion, or enhance <code>DBItest</code> and file a pull request if
the test is generic enough to be useful for many DBI backends.</p>
</div>
<div id="driver" class="section level2">
<h2>Driver</h2>
<p>Start by making a driver class which inherits from
<code>DBIDriver</code>. This class doesn’t need to do anything, it’s
just used to dispatch other generics to the right method. Users don’t
need to know about this, so you can remove it from the default help
listing with <code>@keywords internal</code>:</p>
<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb2-1"><a href="#cb2-1" tabindex="-1"></a><span class="co">#' Driver for Kazam database.</span></span>
<span id="cb2-2"><a href="#cb2-2" tabindex="-1"></a><span class="co">#'</span></span>
<span id="cb2-3"><a href="#cb2-3" tabindex="-1"></a><span class="co">#' @keywords internal</span></span>
<span id="cb2-4"><a href="#cb2-4" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb2-5"><a href="#cb2-5" tabindex="-1"></a><span class="co">#' @import DBI</span></span>
<span id="cb2-6"><a href="#cb2-6" tabindex="-1"></a><span class="co">#' @import methods</span></span>
<span id="cb2-7"><a href="#cb2-7" tabindex="-1"></a><span class="fu">setClass</span>(<span class="st">"KazamDriver"</span>, <span class="at">contains =</span> <span class="st">"DBIDriver"</span>)</span></code></pre></div>
<p>The driver class was more important in older versions of DBI, so you
should also provide a dummy <code>dbUnloadDriver()</code> method.</p>
<div class="sourceCode" id="cb3"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb3-1"><a href="#cb3-1" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb3-2"><a href="#cb3-2" tabindex="-1"></a><span class="co">#' @rdname Kazam-class</span></span>
<span id="cb3-3"><a href="#cb3-3" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbUnloadDriver"</span>, <span class="st">"KazamDriver"</span>, <span class="cf">function</span>(drv, ...) {</span>
<span id="cb3-4"><a href="#cb3-4" tabindex="-1"></a> <span class="cn">TRUE</span></span>
<span id="cb3-5"><a href="#cb3-5" tabindex="-1"></a>})</span></code></pre></div>
<p>If your package needs global setup or tear down, do this in the
<code>.onLoad()</code> and <code>.onUnload()</code> functions.</p>
<p>You might also want to add a show method so the object prints
nicely:</p>
<div class="sourceCode" id="cb4"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb4-1"><a href="#cb4-1" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"show"</span>, <span class="st">"KazamDriver"</span>, <span class="cf">function</span>(object) {</span>
<span id="cb4-2"><a href="#cb4-2" tabindex="-1"></a> <span class="fu">cat</span>(<span class="st">"<KazamDriver></span><span class="sc">\n</span><span class="st">"</span>)</span>
<span id="cb4-3"><a href="#cb4-3" tabindex="-1"></a>})</span></code></pre></div>
<p>Next create <code>Kazam()</code> which instantiates this class.</p>
<div class="sourceCode" id="cb5"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb5-1"><a href="#cb5-1" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb5-2"><a href="#cb5-2" tabindex="-1"></a>Kazam <span class="ot"><-</span> <span class="cf">function</span>() {</span>
<span id="cb5-3"><a href="#cb5-3" tabindex="-1"></a> <span class="fu">new</span>(<span class="st">"KazamDriver"</span>)</span>
<span id="cb5-4"><a href="#cb5-4" tabindex="-1"></a>}</span>
<span id="cb5-5"><a href="#cb5-5" tabindex="-1"></a></span>
<span id="cb5-6"><a href="#cb5-6" tabindex="-1"></a><span class="fu">Kazam</span>()</span>
<span id="cb5-7"><a href="#cb5-7" tabindex="-1"></a><span class="co">#> <KazamDriver></span></span></code></pre></div>
</div>
<div id="connection" class="section level2">
<h2>Connection</h2>
<p>Next create a connection class that inherits from
<code>DBIConnection</code>. This should store all the information needed
to connect to the database. If you’re talking to a C api, this will
include a slot that holds an external pointer.</p>
<div class="sourceCode" id="cb6"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb6-1"><a href="#cb6-1" tabindex="-1"></a><span class="co">#' Kazam connection class.</span></span>
<span id="cb6-2"><a href="#cb6-2" tabindex="-1"></a><span class="co">#'</span></span>
<span id="cb6-3"><a href="#cb6-3" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb6-4"><a href="#cb6-4" tabindex="-1"></a><span class="co">#' @keywords internal</span></span>
<span id="cb6-5"><a href="#cb6-5" tabindex="-1"></a><span class="fu">setClass</span>(<span class="st">"KazamConnection"</span>,</span>
<span id="cb6-6"><a href="#cb6-6" tabindex="-1"></a> <span class="at">contains =</span> <span class="st">"DBIConnection"</span>,</span>
<span id="cb6-7"><a href="#cb6-7" tabindex="-1"></a> <span class="at">slots =</span> <span class="fu">list</span>(</span>
<span id="cb6-8"><a href="#cb6-8" tabindex="-1"></a> <span class="at">host =</span> <span class="st">"character"</span>,</span>
<span id="cb6-9"><a href="#cb6-9" tabindex="-1"></a> <span class="at">username =</span> <span class="st">"character"</span>,</span>
<span id="cb6-10"><a href="#cb6-10" tabindex="-1"></a> <span class="co"># and so on</span></span>
<span id="cb6-11"><a href="#cb6-11" tabindex="-1"></a> <span class="at">ptr =</span> <span class="st">"externalptr"</span></span>
<span id="cb6-12"><a href="#cb6-12" tabindex="-1"></a> )</span>
<span id="cb6-13"><a href="#cb6-13" tabindex="-1"></a>)</span></code></pre></div>
<p>Now you have some of the boilerplate out of the way, you can start
work on the connection. The most important method here is
<code>dbConnect()</code> which allows you to connect to a specified
instance of the database. Note the use of <code>@rdname Kazam</code>.
This ensures that <code>Kazam()</code> and the connect method are
documented together.</p>
<div class="sourceCode" id="cb7"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb7-1"><a href="#cb7-1" tabindex="-1"></a><span class="co">#' @param drv An object created by \code{Kazam()}</span></span>
<span id="cb7-2"><a href="#cb7-2" tabindex="-1"></a><span class="co">#' @rdname Kazam</span></span>
<span id="cb7-3"><a href="#cb7-3" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb7-4"><a href="#cb7-4" tabindex="-1"></a><span class="co">#' @examples</span></span>
<span id="cb7-5"><a href="#cb7-5" tabindex="-1"></a><span class="co">#' \dontrun{</span></span>
<span id="cb7-6"><a href="#cb7-6" tabindex="-1"></a><span class="co">#' db <- dbConnect(RKazam::Kazam())</span></span>
<span id="cb7-7"><a href="#cb7-7" tabindex="-1"></a><span class="co">#' dbWriteTable(db, "mtcars", mtcars)</span></span>
<span id="cb7-8"><a href="#cb7-8" tabindex="-1"></a><span class="co">#' dbGetQuery(db, "SELECT * FROM mtcars WHERE cyl == 4")</span></span>
<span id="cb7-9"><a href="#cb7-9" tabindex="-1"></a><span class="co">#' }</span></span>
<span id="cb7-10"><a href="#cb7-10" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbConnect"</span>, <span class="st">"KazamDriver"</span>, <span class="cf">function</span>(drv, ...) {</span>
<span id="cb7-11"><a href="#cb7-11" tabindex="-1"></a> <span class="co"># ...</span></span>
<span id="cb7-12"><a href="#cb7-12" tabindex="-1"></a></span>
<span id="cb7-13"><a href="#cb7-13" tabindex="-1"></a> <span class="fu">new</span>(<span class="st">"KazamConnection"</span>, <span class="at">host =</span> host, ...)</span>
<span id="cb7-14"><a href="#cb7-14" tabindex="-1"></a>})</span></code></pre></div>
<ul>
<li><p>Replace <code>...</code> with the arguments needed to connect to
your database. You’ll always need to include <code>...</code> in the
arguments, even if you don’t use it, for compatibility with the
generic.</p></li>
<li><p>This is likely to be where people first come for help, so the
examples should show how to connect to the database, and how to query
it. (Obviously these examples won’t work yet.) Ideally, include examples
that can be run right away (perhaps relying on a publicly hosted
database), but failing that surround in <code>\dontrun{}</code> so
people can at least see the code.</p></li>
</ul>
<p>Next, implement <code>show()</code> and <code>dbDisconnect()</code>
methods.</p>
</div>
<div id="results" class="section level2">
<h2>Results</h2>
<p>Finally, you’re ready to implement the meat of the system: fetching
results of a query into a data frame. First define a results class:</p>
<div class="sourceCode" id="cb8"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb8-1"><a href="#cb8-1" tabindex="-1"></a><span class="co">#' Kazam results class.</span></span>
<span id="cb8-2"><a href="#cb8-2" tabindex="-1"></a><span class="co">#'</span></span>
<span id="cb8-3"><a href="#cb8-3" tabindex="-1"></a><span class="co">#' @keywords internal</span></span>
<span id="cb8-4"><a href="#cb8-4" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb8-5"><a href="#cb8-5" tabindex="-1"></a><span class="fu">setClass</span>(<span class="st">"KazamResult"</span>,</span>
<span id="cb8-6"><a href="#cb8-6" tabindex="-1"></a> <span class="at">contains =</span> <span class="st">"DBIResult"</span>,</span>
<span id="cb8-7"><a href="#cb8-7" tabindex="-1"></a> <span class="at">slots =</span> <span class="fu">list</span>(<span class="at">ptr =</span> <span class="st">"externalptr"</span>)</span>
<span id="cb8-8"><a href="#cb8-8" tabindex="-1"></a>)</span></code></pre></div>
<p>Then write a <code>dbSendQuery()</code> method. This takes a
connection and SQL string as arguments, and returns a result object.
Again <code>...</code> is needed for compatibility with the generic, but
you can add other arguments if you need them.</p>
<div class="sourceCode" id="cb9"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb9-1"><a href="#cb9-1" tabindex="-1"></a><span class="co">#' Send a query to Kazam.</span></span>
<span id="cb9-2"><a href="#cb9-2" tabindex="-1"></a><span class="co">#'</span></span>
<span id="cb9-3"><a href="#cb9-3" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb9-4"><a href="#cb9-4" tabindex="-1"></a><span class="co">#' @examples</span></span>
<span id="cb9-5"><a href="#cb9-5" tabindex="-1"></a><span class="co">#' # This is another good place to put examples</span></span>
<span id="cb9-6"><a href="#cb9-6" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbSendQuery"</span>, <span class="st">"KazamConnection"</span>, <span class="cf">function</span>(conn, statement, ...) {</span>
<span id="cb9-7"><a href="#cb9-7" tabindex="-1"></a> <span class="co"># some code</span></span>
<span id="cb9-8"><a href="#cb9-8" tabindex="-1"></a> <span class="fu">new</span>(<span class="st">"KazamResult"</span>, ...)</span>
<span id="cb9-9"><a href="#cb9-9" tabindex="-1"></a>})</span></code></pre></div>
<p>Next, implement <code>dbClearResult()</code>, which should close the
result set and free all resources associated with it:</p>
<div class="sourceCode" id="cb10"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb10-1"><a href="#cb10-1" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb10-2"><a href="#cb10-2" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbClearResult"</span>, <span class="st">"KazamResult"</span>, <span class="cf">function</span>(res, ...) {</span>
<span id="cb10-3"><a href="#cb10-3" tabindex="-1"></a> <span class="co"># free resources</span></span>
<span id="cb10-4"><a href="#cb10-4" tabindex="-1"></a> <span class="cn">TRUE</span></span>
<span id="cb10-5"><a href="#cb10-5" tabindex="-1"></a>})</span></code></pre></div>
<p>The hardest part of every DBI package is writing the
<code>dbFetch()</code> method. This needs to take a result set and
(optionally) number of records to return, and create a dataframe.
Mapping R’s data types to those of your database may require a custom
implementation of the <code>dbDataType()</code> method for your
connection class:</p>
<div class="sourceCode" id="cb11"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb11-1"><a href="#cb11-1" tabindex="-1"></a><span class="co">#' Retrieve records from Kazam query</span></span>
<span id="cb11-2"><a href="#cb11-2" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb11-3"><a href="#cb11-3" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbFetch"</span>, <span class="st">"KazamResult"</span>, <span class="cf">function</span>(res, <span class="at">n =</span> <span class="sc">-</span><span class="dv">1</span>, ...) {</span>
<span id="cb11-4"><a href="#cb11-4" tabindex="-1"></a> ...</span>
<span id="cb11-5"><a href="#cb11-5" tabindex="-1"></a>})</span>
<span id="cb11-6"><a href="#cb11-6" tabindex="-1"></a></span>
<span id="cb11-7"><a href="#cb11-7" tabindex="-1"></a><span class="co"># (optionally)</span></span>
<span id="cb11-8"><a href="#cb11-8" tabindex="-1"></a></span>
<span id="cb11-9"><a href="#cb11-9" tabindex="-1"></a><span class="co">#' Find the database data type associated with an R object</span></span>
<span id="cb11-10"><a href="#cb11-10" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb11-11"><a href="#cb11-11" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbDataType"</span>, <span class="st">"KazamConnection"</span>, <span class="cf">function</span>(dbObj, obj, ...) {</span>
<span id="cb11-12"><a href="#cb11-12" tabindex="-1"></a> ...</span>
<span id="cb11-13"><a href="#cb11-13" tabindex="-1"></a>})</span></code></pre></div>
<p>Next, implement <code>dbHasCompleted()</code> which should return a
<code>logical</code> indicating if there are any rows remaining to be
fetched.</p>
<div class="sourceCode" id="cb12"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb12-1"><a href="#cb12-1" tabindex="-1"></a><span class="co">#' @export</span></span>
<span id="cb12-2"><a href="#cb12-2" tabindex="-1"></a><span class="fu">setMethod</span>(<span class="st">"dbHasCompleted"</span>, <span class="st">"KazamResult"</span>, <span class="cf">function</span>(res, ...) {</span>
<span id="cb12-3"><a href="#cb12-3" tabindex="-1"></a></span>
<span id="cb12-4"><a href="#cb12-4" tabindex="-1"></a>})</span></code></pre></div>
<p>With these four methods in place, you can now use the default
<code>dbGetQuery()</code> to send a query to the database, retrieve
results if available and then clean up. Spend some time now making sure
this works with an existing database, or relax and let the
<code>DBItest</code> package do the work for you.</p>
</div>
<div id="sql-methods" class="section level2">
<h2>SQL methods</h2>
<p>You’re now on the home stretch, and can make your wrapper
substantially more useful by implementing methods that wrap around
variations in SQL across databases:</p>
<ul>
<li><p><code>dbQuoteString()</code> and <code>dbQuoteIdentifer()</code>
are used to safely quote strings and identifiers to avoid SQL injection
attacks. Note that the former must be vectorized, but not the
latter.</p></li>
<li><p><code>dbWriteTable()</code> creates a database table given an R
dataframe. I’d recommend using the functions prefixed with
<code>sql</code> in this package to generate the SQL. These functions
are still a work in progress so please let me know if you have
problems.</p></li>
<li><p><code>dbReadTable()</code>: a simple wrapper around
<code>SELECT * FROM table</code>. Use <code>dbQuoteIdentifer()</code> to
safely quote the table name and prevent mismatches between the names
allowed by R and the database.</p></li>
<li><p><code>dbListTables()</code> and <code>dbExistsTable()</code> let
you determine what tables are available. If not provided by your
database’s API, you may need to generate sql that inspects the system
tables.</p></li>
<li><p><code>dbListFields()</code> shows which fields are available in a
given table.</p></li>
<li><p><code>dbRemoveTable()</code> wraps around
<code>DROP TABLE</code>. Start with
<code>SQL::sqlTableDrop()</code>.</p></li>
<li><p><code>dbBegin()</code>, <code>dbCommit()</code> and
<code>dbRollback()</code>: implement these three functions to provide
basic transaction support. This functionality is currently not tested in
the <code>DBItest</code> package.</p></li>
</ul>
</div>
<div id="metadata-methods" class="section level2">
<h2>Metadata methods</h2>
<p>There are a lot of extra metadata methods for result sets (and one
for the connection) that you might want to implement. They are described
in the following.</p>
<ul>
<li><p><code>dbIsValid()</code> returns if a connection or a result set
is open (<code>TRUE</code>) or closed (<code>FALSE</code>). All further
methods in this section are valid for result sets only.</p></li>
<li><p><code>dbGetStatement()</code> returns the issued query as a
character value.</p></li>
<li><p><code>dbColumnInfo()</code> lists the names and types of the
result set’s columns.</p></li>
<li><p><code>dbGetRowCount()</code> and <code>dbGetRowsAffected()</code>
returns the number of rows returned or altered in a <code>SELECT</code>
or <code>INSERT</code>/<code>UPDATE</code> query, respectively.</p></li>
<li><p><code>dbBind()</code> allows using parametrised queries. Take a
look at <code>sqlInterpolate()</code> and
<code>sqlParseVariables()</code> if your SQL engine doesn’t offer native
parametrised queries.</p></li>
</ul>
</div>
<div id="full-dbi-compliance" class="section level2">
<h2>Full DBI compliance</h2>
<p>By now, your package should implement all methods defined in the DBI
specification. If you want to walk the extra mile, offer a read-only
mode that allows your users to be sure that their valuable data doesn’t
get destroyed inadvertently.</p>
</div>
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