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/*
*
* Copyright (C) 1994-2010, OFFIS e.V.
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation were developed by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmdata
*
* Author: Gerd Ehlers
*
* Purpose: List the contents of a dicom file
*
* Last Update: $Author: joergr $
* Update Date: $Date: 2010-10-29 13:54:22 $
* CVS/RCS Revision: $Revision: 1.86 $
* Status: $State: Exp $
*
* CVS/RCS Log at end of file
*
*/
#include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */
#include "dcmtk/ofstd/ofstream.h"
#include "dcmtk/dcmdata/dctk.h"
#include "dcmtk/dcmdata/cmdlnarg.h"
#include "dcmtk/ofstd/ofconapp.h"
#include "dcmtk/ofstd/ofstd.h"
#include "dcmtk/dcmdata/dcuid.h" /* for dcmtk version name */
#include "dcmtk/dcmdata/dcistrmz.h" /* for dcmZlibExpectRFC1950Encoding */
#define INCLUDE_CSTDLIB
#define INCLUDE_CSTRING
#include "dcmtk/ofstd/ofstdinc.h"
#ifdef WITH_ZLIB
#include <zlib.h> /* for zlibVersion() */
#endif
#if defined (HAVE_WINDOWS_H) || defined(HAVE_FNMATCH_H)
#define PATTERN_MATCHING_AVAILABLE
#endif
#ifndef HAVE_WINDOWS_H
#define ANSI_ESCAPE_CODES_AVAILABLE
#endif
#define OFFIS_CONSOLE_APPLICATION "dcmdump"
static OFLogger dcmdumpLogger = OFLog::getLogger("dcmtk.apps." OFFIS_CONSOLE_APPLICATION);
static char rcsid[] = "$dcmtk: " OFFIS_CONSOLE_APPLICATION " v"
OFFIS_DCMTK_VERSION " " OFFIS_DCMTK_RELEASEDATE " $";
#ifdef HAVE_GUSI_H
/* needed for Macintosh */
#include <GUSI.h>
#include <SIOUX.h>
#endif
static int dumpFile(STD_NAMESPACE ostream &out,
const char *ifname,
const E_FileReadMode readMode,
const E_TransferSyntax xfer,
const size_t printFlags,
const OFBool loadIntoMemory,
const OFBool stopOnErrors,
const char *pixelDirectory);
// ********************************************
static OFBool printFilename = OFFalse;
static OFBool printFileSearch = OFFalse;
static OFBool printAllInstances = OFTrue;
static OFBool prependSequenceHierarchy = OFFalse;
static int printTagCount = 0;
static const int MAX_PRINT_TAG_NAMES = 1024;
static const char *printTagNames[MAX_PRINT_TAG_NAMES];
static const DcmTagKey *printTagKeys[MAX_PRINT_TAG_NAMES];
static OFCmdUnsignedInt maxReadLength = 4096; // default is 4 KB
static size_t fileCounter = 0;
static DcmTagKey parseTagKey(const char *tagName)
{
unsigned int group = 0xffff;
unsigned int elem = 0xffff;
if (sscanf(tagName, "%x,%x", &group, &elem) != 2)
{
DcmTagKey tagKey;
/* it is a name */
const DcmDataDictionary &globalDataDict = dcmDataDict.rdlock();
const DcmDictEntry *dicent = globalDataDict.findEntry(tagName);
if (dicent == NULL) {
OFLOG_WARN(dcmdumpLogger, "unrecognized tag name: '" << tagName << "'");
tagKey = DCM_UndefinedTagKey;
} else {
tagKey = dicent->getKey();
}
dcmDataDict.unlock();
return tagKey;
} else /* tag name has format "gggg,eeee" */
{
return DcmTagKey(group,elem);
}
}
static OFBool addPrintTagName(const char *tagName)
{
if (printTagCount >= MAX_PRINT_TAG_NAMES) {
OFLOG_WARN(dcmdumpLogger, "too many print tag options (max: " << MAX_PRINT_TAG_NAMES << ")");
return OFFalse;
}
unsigned int group = 0xffff;
unsigned int elem = 0xffff;
if (sscanf(tagName, "%x,%x", &group, &elem) != 2)
{
/* it is a name */
const DcmDataDictionary &globalDataDict = dcmDataDict.rdlock();
const DcmDictEntry *dicent = globalDataDict.findEntry(tagName);
if (dicent == NULL) {
OFLOG_WARN(dcmdumpLogger, "unrecognized tag name: '" << tagName << "'");
dcmDataDict.unlock();
return OFFalse;
} else {
/* note for later */
printTagKeys[printTagCount] = new DcmTagKey(dicent->getKey());
}
dcmDataDict.unlock();
} else {
/* tag name has format xxxx,xxxx */
/* do not lookup in dictionary, tag could be private */
printTagKeys[printTagCount] = NULL;
}
printTagNames[printTagCount] = strcpy(OFstatic_cast(char*, malloc(strlen(tagName)+1)), tagName);
printTagCount++;
return OFTrue;
}
#define SHORTCOL 3
#define LONGCOL 21
int main(int argc, char *argv[])
{
OFBool loadIntoMemory = OFTrue;
size_t printFlags = DCMTypes::PF_shortenLongTagValues;
E_FileReadMode readMode = ERM_autoDetect;
E_TransferSyntax xfer = EXS_Unknown;
OFBool stopOnErrors = OFTrue;
OFBool scanDir = OFFalse;
OFBool recurse = OFFalse;
const char *scanPattern = "";
const char *pixelDirectory = NULL;
#ifdef HAVE_GUSI_H
/* needed for Macintosh */
/* set options for the Metrowerks CodeWarrior SIOUX console */
SIOUXSettings.autocloseonquit = OFFalse;
SIOUXSettings.asktosaveonclose = OFFalse;
SIOUXSettings.showstatusline = OFTrue;
SIOUXSettings.setupmenus = OFTrue;
/* set options for the GUSI sockets library */
GUSISetup(GUSIwithSIOUXSockets);
GUSISetup(GUSIwithInternetSockets);
#endif
OFConsoleApplication app(OFFIS_CONSOLE_APPLICATION, "Dump DICOM file and data set", rcsid);
OFCommandLine cmd;
cmd.setOptionColumns(LONGCOL, SHORTCOL);
cmd.setParamColumn(LONGCOL + SHORTCOL + 4);
cmd.addParam("dcmfile-in", "DICOM input file or directory to be dumped", OFCmdParam::PM_MultiMandatory);
cmd.addGroup("general options:", LONGCOL, SHORTCOL + 2);
cmd.addOption("--help", "-h", "print this help text and exit", OFCommandLine::AF_Exclusive);
cmd.addOption("--version", "print version information and exit", OFCommandLine::AF_Exclusive);
OFLog::addOptions(cmd);
cmd.addGroup("input options:");
cmd.addSubGroup("input file format:");
cmd.addOption("--read-file", "+f", "read file format or data set (default)");
cmd.addOption("--read-file-only", "+fo", "read file format only");
cmd.addOption("--read-dataset", "-f", "read data set without file meta information");
cmd.addSubGroup("input transfer syntax:");
cmd.addOption("--read-xfer-auto", "-t=", "use TS recognition (default)");
cmd.addOption("--read-xfer-detect", "-td", "ignore TS specified in the file meta header");
cmd.addOption("--read-xfer-little", "-te", "read with explicit VR little endian TS");
cmd.addOption("--read-xfer-big", "-tb", "read with explicit VR big endian TS");
cmd.addOption("--read-xfer-implicit", "-ti", "read with implicit VR little endian TS");
cmd.addSubGroup("input files:");
cmd.addOption("--scan-directories", "+sd", "scan directories for input files (dcmfile-in)");
#ifdef PATTERN_MATCHING_AVAILABLE
cmd.addOption("--scan-pattern", "+sp", 1, "[p]attern: string (only with --scan-directories)",
"pattern for filename matching (wildcards)");
#endif
cmd.addOption("--no-recurse", "-r", "do not recurse within directories (default)");
cmd.addOption("--recurse", "+r", "recurse within specified directories");
cmd.addSubGroup("parsing of file meta information:");
cmd.addOption("--use-meta-length", "+ml", "use file meta information group length (default)");
cmd.addOption("--ignore-meta-length", "-ml", "ignore file meta information group length");
cmd.addSubGroup("parsing of odd-length attributes:");
cmd.addOption("--accept-odd-length", "+ao", "accept odd length attributes (default)");
cmd.addOption("--assume-even-length", "+ae", "assume real length is one byte larger");
cmd.addSubGroup("handling of non-standard VR:");
cmd.addOption("--treat-as-unknown", "+vr", "treat non-standard VR as unknown (default)");
cmd.addOption("--assume-implicit", "-vr", "try to read with implicit VR little endian TS");
cmd.addSubGroup("handling of undefined length UN elements:");
cmd.addOption("--enable-cp246", "+ui", "read undefined len UN as implicit VR (default)");
cmd.addOption("--disable-cp246", "-ui", "read undefined len UN as explicit VR");
cmd.addSubGroup("handling of defined length UN elements:");
cmd.addOption("--retain-un", "-uc", "retain elements as UN (default)");
cmd.addOption("--convert-un", "+uc", "convert to real VR if known");
cmd.addSubGroup("handling of private max-length elements (implicit VR):");
cmd.addOption("--maxlength-dict", "-sq", "read as defined in dictionary (default)");
cmd.addOption("--maxlength-seq", "+sq", "read as sequence with undefined length");
cmd.addSubGroup("general handling of parser errors: ");
cmd.addOption("--ignore-parse-errors", "+Ep", "try to recover from parse errors");
cmd.addOption("--handle-parse-errors", "-Ep", "handle parse errors and stop parsing (default)");
cmd.addSubGroup("other parsing options:");
cmd.addOption("--stop-after-elem", "+st", 1, "[t]ag: \"gggg,eeee\" or dictionary name",
"stop parsing after element specified by t");
cmd.addSubGroup("automatic data correction:");
cmd.addOption("--enable-correction", "+dc", "enable automatic data correction (default)");
cmd.addOption("--disable-correction", "-dc", "disable automatic data correction");
#ifdef WITH_ZLIB
cmd.addSubGroup("bitstream format of deflated input:");
cmd.addOption("--bitstream-deflated", "+bd", "expect deflated bitstream (default)");
cmd.addOption("--bitstream-zlib", "+bz", "expect deflated zlib bitstream");
#endif
cmd.addGroup("output options:");
cmd.addSubGroup("loading:");
cmd.addOption("--load-all", "+M", "load very long tag values (default)");
cmd.addOption("--load-short", "-M", "do not load very long values (e.g. pixel data)");
cmd.addOption("--max-read-length", "+R", 1, "[k]bytes: integer (4..4194302, default: 4)",
"set threshold for long values to k kbytes");
cmd.addSubGroup("printing:");
cmd.addOption("--print-all", "+L", "print long tag values completely");
cmd.addOption("--print-short", "-L", "print long tag values shortened (default)");
cmd.addOption("--print-tree", "+T", "print hierarchical structure as a simple tree");
cmd.addOption("--print-indented", "-T", "print hierarchical structure indented (default)");
cmd.addOption("--print-filename", "+F", "print header with filename for each input file");
cmd.addOption("--print-file-search", "+Fs", "print header with filename only for those input\nfiles that contain one of the searched tags");
cmd.addOption("--map-uid-names", "+Un", "map well-known UID numbers to names (default)");
cmd.addOption("--no-uid-names", "-Un", "do not map well-known UID numbers to names");
cmd.addOption("--quote-nonascii", "+Qn", "quote non-ASCII and control chars as XML markup");
cmd.addOption("--print-nonascii", "-Qn", "print non-ASCII and control chars (default)");
#ifdef ANSI_ESCAPE_CODES_AVAILABLE
cmd.addOption("--print-color", "+C", "use ANSI escape codes for colored output");
#endif
cmd.addSubGroup("error handling:");
cmd.addOption("--stop-on-error", "-E", "do not print if file is damaged (default)");
cmd.addOption("--ignore-errors", "+E", "attempt to print even if file is damaged");
cmd.addSubGroup("searching:");
cmd.addOption("--search", "+P", 1, "[t]ag: \"gggg,eeee\" or dictionary name",
"print the value of tag t\nthis option can be specified multiple times\n(default: the complete file is printed)");
cmd.addOption("--search-all", "+s", "print all instances of searched tags (default)");
cmd.addOption("--search-first", "-s", "only print first instance of searched tags");
cmd.addOption("--prepend", "+p", "prepend sequence hierarchy to printed tag,\ndenoted by: (gggg,eeee).(gggg,eeee).*\n(only with --search-all or --search-first)");
cmd.addOption("--no-prepend", "-p", "do not prepend hierarchy to tag (default)");
cmd.addSubGroup("writing:");
cmd.addOption("--write-pixel", "+W", 1, "[d]irectory: string",
"write pixel data to a .raw file stored in d\n(little endian, filename created automatically)");
/* evaluate command line */
prepareCmdLineArgs(argc, argv, OFFIS_CONSOLE_APPLICATION);
if (app.parseCommandLine(cmd, argc, argv, OFCommandLine::PF_ExpandWildcards))
{
/* check exclusive options first */
if (cmd.hasExclusiveOption())
{
if (cmd.findOption("--version"))
{
app.printHeader(OFTrue /*print host identifier*/);
COUT << OFendl << "External libraries used:";
#ifdef WITH_ZLIB
COUT << OFendl << "- ZLIB, Version " << zlibVersion() << OFendl;
#else
COUT << " none" << OFendl;
#endif
return 0;
}
}
/* options */
OFLog::configureFromCommandLine(cmd, app);
cmd.beginOptionBlock();
if (cmd.findOption("--read-file")) readMode = ERM_autoDetect;
if (cmd.findOption("--read-file-only")) readMode = ERM_fileOnly;
if (cmd.findOption("--read-dataset")) readMode = ERM_dataset;
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--read-xfer-auto"))
xfer = EXS_Unknown;
if (cmd.findOption("--read-xfer-detect"))
dcmAutoDetectDatasetXfer.set(OFTrue);
if (cmd.findOption("--read-xfer-little"))
{
app.checkDependence("--read-xfer-little", "--read-dataset", readMode == ERM_dataset);
xfer = EXS_LittleEndianExplicit;
}
if (cmd.findOption("--read-xfer-big"))
{
app.checkDependence("--read-xfer-big", "--read-dataset", readMode == ERM_dataset);
xfer = EXS_BigEndianExplicit;
}
if (cmd.findOption("--read-xfer-implicit"))
{
app.checkDependence("--read-xfer-implicit", "--read-dataset", readMode == ERM_dataset);
xfer = EXS_LittleEndianImplicit;
}
cmd.endOptionBlock();
if (cmd.findOption("--scan-directories")) scanDir = OFTrue;
#ifdef PATTERN_MATCHING_AVAILABLE
if (cmd.findOption("--scan-pattern"))
{
app.checkDependence("--scan-pattern", "--scan-directories", scanDir);
app.checkValue(cmd.getValue(scanPattern));
}
#endif
cmd.beginOptionBlock();
if (cmd.findOption("--no-recurse")) recurse = OFFalse;
if (cmd.findOption("--recurse"))
{
app.checkDependence("--recurse", "--scan-directories", scanDir);
recurse = OFTrue;
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--use-meta-length"))
{
dcmIgnoreFileMetaInformationGroupLength.set(OFFalse);
}
if (cmd.findOption("--ignore-meta-length"))
{
dcmIgnoreFileMetaInformationGroupLength.set(OFTrue);
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--accept-odd-length"))
{
dcmAcceptOddAttributeLength.set(OFTrue);
}
if (cmd.findOption("--assume-even-length"))
{
dcmAcceptOddAttributeLength.set(OFFalse);
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--treat-as-unknown"))
{
dcmAcceptUnexpectedImplicitEncoding.set(OFFalse);
}
if (cmd.findOption("--assume-implicit"))
{
dcmAcceptUnexpectedImplicitEncoding.set(OFTrue);
}
cmd.beginOptionBlock();
if (cmd.findOption("--enable-cp246"))
{
dcmEnableCP246Support.set(OFTrue);
}
if (cmd.findOption("--disable-cp246"))
{
dcmEnableCP246Support.set(OFFalse);
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--retain-un"))
{
dcmEnableUnknownVRConversion.set(OFFalse);
}
if (cmd.findOption("--convert-un"))
{
dcmEnableUnknownVRConversion.set(OFTrue);
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--maxlength-dict"))
{
dcmReadImplPrivAttribMaxLengthAsSQ.set(OFFalse);
}
if (cmd.findOption("--maxlength-seq"))
{
dcmReadImplPrivAttribMaxLengthAsSQ.set(OFTrue);
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--ignore-parse-errors"))
{
dcmIgnoreParsingErrors.set(OFTrue);
}
if (cmd.findOption("--handle-parse-errors"))
{
dcmIgnoreParsingErrors.set(OFFalse);
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--enable-correction"))
{
dcmEnableAutomaticInputDataCorrection.set(OFTrue);
}
if (cmd.findOption("--disable-correction"))
{
dcmEnableAutomaticInputDataCorrection.set(OFFalse);
}
cmd.endOptionBlock();
#ifdef WITH_ZLIB
cmd.beginOptionBlock();
if (cmd.findOption("--bitstream-deflated"))
{
dcmZlibExpectRFC1950Encoding.set(OFFalse);
}
if (cmd.findOption("--bitstream-zlib"))
{
dcmZlibExpectRFC1950Encoding.set(OFTrue);
}
cmd.endOptionBlock();
#endif
if (cmd.findOption("--max-read-length"))
{
app.checkValue(cmd.getValueAndCheckMinMax(maxReadLength, 4, 4194302));
maxReadLength *= 1024; // convert kbytes to bytes
}
cmd.beginOptionBlock();
if (cmd.findOption("--load-all")) loadIntoMemory = OFTrue;
if (cmd.findOption("--load-short")) loadIntoMemory = OFFalse;
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--print-all")) printFlags &= ~DCMTypes::PF_shortenLongTagValues;
if (cmd.findOption("--print-short")) printFlags |= DCMTypes::PF_shortenLongTagValues;
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--print-tree")) printFlags |= DCMTypes::PF_showTreeStructure;
if (cmd.findOption("--print-indented")) printFlags &= ~DCMTypes::PF_showTreeStructure;
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--print-filename"))
{
printFilename = OFTrue;
printFileSearch = OFFalse;
}
if (cmd.findOption("--print-file-search"))
{
printFileSearch = OFTrue;
printFilename = OFFalse;
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--map-uid-names")) printFlags &= ~DCMTypes::PF_doNotMapUIDsToNames;
if (cmd.findOption("--no-uid-names")) printFlags |= DCMTypes::PF_doNotMapUIDsToNames;
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--quote-nonascii")) printFlags |= DCMTypes::PF_convertToMarkup;
if (cmd.findOption("--print-nonascii")) printFlags &= ~DCMTypes::PF_convertToMarkup;
cmd.endOptionBlock();
#ifdef ANSI_ESCAPE_CODES_AVAILABLE
if (cmd.findOption("--print-color")) printFlags |= DCMTypes::PF_useANSIEscapeCodes;
#endif
cmd.beginOptionBlock();
if (cmd.findOption("--stop-on-error")) stopOnErrors = OFTrue;
if (cmd.findOption("--ignore-errors")) stopOnErrors = OFFalse;
cmd.endOptionBlock();
if (cmd.findOption("--stop-after-elem"))
{
const char *tagName = NULL;
app.checkValue(cmd.getValue(tagName));
DcmTagKey key = parseTagKey(tagName);
if (key != DCM_UndefinedTagKey)
dcmStopParsingAfterElement.set(key);
else
app.printError("no valid key given for option --stop-after-elem");
}
if (cmd.findOption("--search", 0, OFCommandLine::FOM_FirstFromLeft))
{
const char *tagName = NULL;
do
{
app.checkValue(cmd.getValue(tagName));
if (!addPrintTagName(tagName)) return 1;
} while (cmd.findOption("--search", 0, OFCommandLine::FOM_NextFromLeft));
}
if (printFileSearch)
app.checkDependence("--print-file-search", "--search", printTagCount > 0);
cmd.beginOptionBlock();
if (cmd.findOption("--search-all"))
{
app.checkDependence("--search-all", "--search", printTagCount > 0);
printAllInstances = OFTrue;
}
if (cmd.findOption("--search-first"))
{
app.checkDependence("--search-first", "--search", printTagCount > 0);
printAllInstances = OFFalse;
}
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--prepend"))
{
app.checkDependence("--prepend", "--search", printTagCount > 0);
prependSequenceHierarchy = OFTrue;
}
if (cmd.findOption("--no-prepend"))
{
app.checkDependence("--no-prepend", "--search", printTagCount > 0);
prependSequenceHierarchy = OFFalse;
}
cmd.endOptionBlock();
app.checkConflict("--prepend", "--print-tree", prependSequenceHierarchy && (printFlags & DCMTypes::PF_showTreeStructure) > 0);
if (cmd.findOption("--write-pixel"))
app.checkValue(cmd.getValue(pixelDirectory));
}
/* print resource identifier */
OFLOG_DEBUG(dcmdumpLogger, rcsid << OFendl);
/* make sure data dictionary is loaded */
if (!dcmDataDict.isDictionaryLoaded())
{
OFLOG_WARN(dcmdumpLogger, "no data dictionary loaded, check environment variable: "
<< DCM_DICT_ENVIRONMENT_VARIABLE);
}
/* make sure the pixel data directory exists and is writable */
if (pixelDirectory != NULL)
{
if (!OFStandard::dirExists(pixelDirectory))
{
OFLOG_WARN(dcmdumpLogger, "directory specified for --write-pixel does not exist, ignoring this option");
pixelDirectory = NULL;
}
else if (!OFStandard::isWriteable(pixelDirectory))
{
OFLOG_WARN(dcmdumpLogger, "directory specified for --write-pixel is not writeable, ignoring this option");
pixelDirectory = NULL;
}
}
int errorCount = 0;
/* create list of input files */
const char *paramString = NULL;
const int paramCount = cmd.getParamCount();
OFList<OFString> inputFiles;
/* iterate over all input filenames */
for (int i = 1; i <= paramCount; i++)
{
cmd.getParam(i, paramString);
/* search directory recursively (if required) */
if (OFStandard::dirExists(paramString))
{
if (scanDir)
OFStandard::searchDirectoryRecursively(paramString, inputFiles, scanPattern, "" /*dirPrefix*/, recurse);
else
OFLOG_WARN(dcmdumpLogger, "ignoring directory because option --scan-directories is not set: " << paramString);
} else
inputFiles.push_back(paramString);
}
/* check whether there are any input files at all */
if (inputFiles.empty())
{
OFLOG_FATAL(dcmdumpLogger, "no input files to be dumped");
return 1;
}
const size_t count = inputFiles.size();
const char *current = NULL;
OFListIterator(OFString) if_iter = inputFiles.begin();
OFListIterator(OFString) if_last = inputFiles.end();
/* iterate over all input filenames */
while (if_iter != if_last)
{
current = (*if_iter++).c_str();
if (printFilename)
{
/* a newline separates two consecutive "dumps" */
if (++fileCounter > 1)
COUT << OFendl;
/* print header with filename */
COUT << "# " << OFFIS_CONSOLE_APPLICATION << " (" << fileCounter << "/" << count << "): " << current << OFendl;
}
errorCount += dumpFile(COUT, current, readMode, xfer, printFlags, loadIntoMemory, stopOnErrors, pixelDirectory);
}
return errorCount;
}
static void printResult(STD_NAMESPACE ostream &out,
DcmStack &stack,
size_t printFlags,
const char*pixelFileName = NULL,
size_t *pixelCounter = NULL)
{
unsigned long n = stack.card();
if (n == 0) {
return;
}
if (prependSequenceHierarchy) {
if (printFlags & DCMTypes::PF_useANSIEscapeCodes)
out << ANSI_ESCAPE_CODE_TAG;
/* print the path leading up to the top stack elem */
for (unsigned long i = n - 1; i >= 1; i--) {
DcmObject *dobj = stack.elem(i);
/* do not print if a DCM_Item as this is not
* very helpful to distinguish instances.
*/
if (dobj != NULL && dobj->getTag().getXTag() != DCM_Item) {
out << dobj->getTag() << ".";
}
}
}
/* print the tag and its value */
DcmObject *dobj = stack.top();
dobj->print(out, printFlags, 1 /*level*/, pixelFileName, pixelCounter);
}
static int dumpFile(STD_NAMESPACE ostream &out,
const char *ifname,
const E_FileReadMode readMode,
const E_TransferSyntax xfer,
const size_t printFlags,
const OFBool loadIntoMemory,
const OFBool stopOnErrors,
const char *pixelDirectory)
{
int result = 0;
if ((ifname == NULL) || (strlen(ifname) == 0))
{
OFLOG_ERROR(dcmdumpLogger, OFFIS_CONSOLE_APPLICATION << ": invalid filename: <empty string>");
return 1;
}
DcmFileFormat dfile;
DcmObject *dset = &dfile;
if (readMode == ERM_dataset) dset = dfile.getDataset();
OFCondition cond = dfile.loadFile(ifname, xfer, EGL_noChange, maxReadLength, readMode);
if (cond.bad())
{
OFLOG_ERROR(dcmdumpLogger, OFFIS_CONSOLE_APPLICATION << ": " << cond.text()
<< ": reading file: "<< ifname);
result = 1;
if (stopOnErrors) return result;
}
if (loadIntoMemory) dfile.loadAllDataIntoMemory();
size_t pixelCounter = 0;
const char *pixelFileName = NULL;
OFString pixelFilenameStr;
if (pixelDirectory != NULL)
{
/* create filename for pixel data */
OFString fileName;
OFStandard::getFilenameFromPath(fileName, ifname);
OFStandard::combineDirAndFilename(pixelFilenameStr, pixelDirectory, fileName);
pixelFileName = pixelFilenameStr.c_str();
}
/* dump complete file content */
if (printTagCount == 0)
{
dset->print(out, printFlags, 0 /*level*/, pixelFileName, &pixelCounter);
} else {
OFBool firstTag = OFTrue;
/* only print specified tags */
for (int i = 0; i < printTagCount; i++)
{
unsigned int group = 0xffff;
unsigned int elem = 0xffff;
DcmTagKey searchKey;
const char *tagName = printTagNames[i];
if (printTagKeys[i])
searchKey = *printTagKeys[i];
else if (sscanf(tagName, "%x,%x", &group, &elem) == 2)
searchKey.set(group, elem);
else {
OFLOG_FATAL(dcmdumpLogger, "Internal ERROR in File " << __FILE__ << ", Line "
<< __LINE__ << OFendl << " -- Named tag inconsistency");
abort();
}
DcmStack stack;
if (dset->search(searchKey, stack, ESM_fromHere, OFTrue) == EC_Normal)
{
if (firstTag)
{
if (!printFilename)
{
/* a newline separates two consecutive "dumps" */
if (++fileCounter > 1)
COUT << OFendl;
}
/* print header with filename */
if (printFileSearch)
COUT << "# " << OFFIS_CONSOLE_APPLICATION << " (" << fileCounter << "): " << ifname << OFendl;
firstTag = OFFalse;
}
printResult(out, stack, printFlags, pixelFileName, &pixelCounter);
if (printAllInstances)
{
while (dset->search(searchKey, stack, ESM_afterStackTop, OFTrue) == EC_Normal)
printResult(out, stack, printFlags, pixelFileName, &pixelCounter);
}
}
}
}
return result;
}
/*
* CVS/RCS Log:
* $Log: dcmdump.cc,v $
* Revision 1.86 2010-10-29 13:54:22 joergr
* Remove new --print-color option for Windows system since the ANSI escape
* codes are not supported by the standard command shell.
*
* Revision 1.85 2010-10-29 10:59:34 joergr
* Added new option for colored output of the textual dump.
*
* Revision 1.84 2010-10-14 13:13:30 joergr
* Updated copyright header. Added reference to COPYRIGHT file.
*
* Revision 1.83 2010-07-21 12:54:45 joergr
* Made sure that no NULL pointer is passed to the OFString constructor. This
* occurred when option --scan-directories was used without --scan-pattern.
*
* Revision 1.82 2010-03-23 15:17:24 joergr
* Use printError() method for command line parsing errors only. After the
* resource identifier has been printed to the log stream use "oflog" instead.
*
* Revision 1.81 2010-03-04 09:42:42 joergr
* Fixed possible issue with read locks on global data dictionary.
* Use return value of getTag() for stream output where possible.
*
* Revision 1.80 2009-11-13 13:20:23 joergr
* Fixed minor issues in log output.
*
* Revision 1.79 2009-11-04 09:58:06 uli
* Switched to logging mechanism provided by the "new" oflog module
*
* Revision 1.78 2009-06-04 16:50:18 joergr
* Added new command line option that allows for ignoring the value of File Meta
* Information Group Length (0002,0000).
*
* Revision 1.77 2009-04-24 12:20:41 joergr
* Fixed minor inconsistencies regarding layout/formatting in syntax usage.
*
* Revision 1.76 2009-04-21 14:02:49 joergr
* Fixed minor inconsistencies in manpage / syntax usage.
*
* Revision 1.75 2009-03-18 13:57:16 joergr
* Removed redundant call to OFString constructor.
*
* Revision 1.74 2009-03-13 10:13:36 joergr
* Added check on pixel data directory (option --write-pixel), i.e. whether it
* exists and whether it is writable. Added support for option --write-pixel
* when --search is used to print selected tags only.
*
* Revision 1.73 2009-02-11 16:55:31 joergr
* Renamed option --stop-at-elem to --stop-after-elem and fixed typo.
*
* Revision 1.72 2009-02-11 13:16:17 onken
* Added global parser flag permitting to stop parsing after a specific
* element was parsed on dataset level (useful for removing garbage at
* end of file).
*
* Revision 1.71 2009-02-04 14:30:07 joergr
* Fixed small issue with syntax usage layout.
* Introduced new syntax usage output subsection "loading".
*
* Revision 1.70 2009-02-04 14:07:10 onken
* Added command line options making use of the parser's error ignoring flag.
*
* Revision 1.69 2009-01-29 15:36:52 onken
* *** empty log message ***
*
* Revision 1.68 2009-01-06 16:30:29 joergr
* Made command line option --quiet visible by default (not only in experimental
* mode).
* Added new command line options for changing the output format (tree structure
* vs. indented output).
*
* Revision 1.67 2009-01-05 15:30:15 joergr
* Added command line options that allow for reading incorrectly encoded DICOM
* datasets where particular data elements are encoded with a differing transfer
* syntax (Implicit VR Little endian instead of Explicit VR encoding).
*
* Revision 1.66 2008-09-25 14:53:12 joergr
* Moved output of resource identifier in order to avoid printing the same
* information twice.
*
* Revision 1.65 2008-09-25 11:16:32 joergr
* Added method for printing the resource identifier of an application.
*
* Revision 1.64 2008-09-24 13:30:24 joergr
* Added support for printing the expanded command line arguments to standard
* output stream.
* Always output the resource identifier of the command line tool in debug mode.
*
* Revision 1.63 2008-04-28 09:30:10 meichel
* Implemented new command line option --quote-nonascii in dcmdump that
* quotes non-ASCII and control characters as XML markup.
*
* Revision 1.62 2008-04-16 12:36:28 joergr
* Changed order of command line evaluation for option --search (now: from left
* to right).
*
* Revision 1.61 2008-02-26 16:54:12 joergr
* Added new command line option that disables the mapping of well-known UID
* numbers to their associated names (e.g. transfer syntax or SOP class).
*
* Revision 1.60 2007/10/24 17:13:33 joergr
* Added new command line option which prints a header with the filename only
* for those input files that contain one of the searched tags.
* Fixed small layout and formatting issues in the dump output (missing
* indentation and leading zeros).
* Replaced sprintf() call by an appropriate use of the C++ stream manipulators.
*
* Revision 1.59 2007/10/01 16:52:38 joergr
* Added support for searching directories recursively for DICOM files.
* Enhanced experimental quiet mode.
*
* Revision 1.58 2007/03/09 14:58:31 joergr
* Fixed wrong output of status variable after calling loadFile().
*
* Revision 1.57 2006/08/15 15:50:56 meichel
* Updated all code in module dcmdata to correctly compile when
* all standard C++ classes remain in namespace std.
*
* Revision 1.56 2006/07/27 13:52:42 joergr
* Changed parameter "exclusive" of method addOption() from type OFBool into an
* integer parameter "flags". Prepended prefix "PF_" to parseLine() flags.
* Option "--help" is no longer an exclusive option by default.
*
* Revision 1.55 2005/12/08 15:40:46 meichel
* Changed include path schema for all DCMTK header files
*
* Revision 1.54 2005/12/07 16:42:49 onken
* Changed default and minimum value of --max-read-length to 4 KB
*
* Revision 1.53 2005/12/02 09:16:17 joergr
* Added new command line option that ignores the transfer syntax specified in
* the meta header and tries to detect the transfer syntax automatically from
* the dataset.
* Added new command line option that checks whether a given file starts with a
* valid DICOM meta header.
* Added experimental support for a "quiet" mode.
* Made description of option --max-read-length more consistent with the other
* command line tools.
*
* Revision 1.52 2005/12/01 11:25:44 joergr
* Removed superfluous local variable. Changed type of variable "maxReadLength".
*
* Revision 1.51 2005/11/17 11:26:11 onken
* Option --max-read-length now uses OFCommandLine to check, whether option
* value is in range
*
* Revision 1.50 2005/11/16 14:59:11 onken
* *** empty log message ***
*
* Revision 1.49 2005/11/16 14:55:56 onken
* Added "--max-read-length" option to dcmdump and dcm2xml to override
* DCMTK-internal threshold (4096K) for long attribute values.
*
* Revision 1.48 2005/11/15 18:33:20 meichel
* Added new command line option --convert-un that enables the re-conversion of
* defined length UN elements.
*
* Revision 1.47 2004/01/16 10:52:42 joergr
* Adapted type casts to new-style typecast operators defined in ofcast.h.
* Removed acknowledgements with e-mail addresses from CVS log.
*
* Revision 1.46 2002/12/13 13:44:29 meichel
* Fixed problem in dcmdump, --ignore-errors now works correctly again.
*
* Revision 1.45 2002/12/06 12:05:44 joergr
* Enhanced "print()" function by re-working the implementation and replacing
* the boolean "showFullData" parameter by a more general integer flag.
*
* Revision 1.44 2002/11/27 12:07:16 meichel
* Adapted module dcmdata to use of new header file ofstdinc.h
*
* Revision 1.43 2002/11/26 08:43:00 meichel
* Replaced all includes for "zlib.h" with <zlib.h>
* to avoid inclusion of zlib.h in the makefile dependencies.
*
* Revision 1.42 2002/09/23 17:52:02 joergr
* Prepared code for future support of 'config.guess' host identifiers.
*
* Revision 1.41 2002/09/23 13:50:41 joergr
* Added new command line option "--version" which prints the name and version
* number of external libraries used.
*
* Revision 1.40 2002/08/27 16:55:26 meichel
* Initial release of new DICOM I/O stream classes that add support for stream
* compression (deflated little endian explicit VR transfer syntax)
*
* Revision 1.39 2002/08/20 12:19:57 meichel
* Adapted code to new loadFile and saveFile methods, thus removing direct
* use of the DICOM stream classes.
*
* Revision 1.38 2002/08/02 08:43:16 joergr
* Fixed bug in dcmdump that was preventing the +p option from working.
*
* Revision 1.37 2002/07/08 14:44:54 meichel
* Improved dcmdata behaviour when reading odd tag length. Depending on the
* global boolean flag dcmAcceptOddAttributeLength, the parser now either accepts
* odd length attributes or implements the old behaviour, i.e. assumes a real
* length larger by one.
*
* Revision 1.36 2002/04/16 13:38:53 joergr
* Added configurable support for C++ ANSI standard includes (e.g. streams).
*
* Revision 1.35 2002/01/11 14:34:20 joergr
* Added new option to dcmdump tool which prints a header with the filename.
*
* Revision 1.34 2001/09/28 14:18:45 joergr
* Changed formatting.
*
* Revision 1.33 2001/09/25 17:20:59 meichel
* Adapted dcmdata to class OFCondition
*
* Revision 1.32 2001/06/01 15:48:28 meichel
* Updated copyright header
*
* Revision 1.31 2000/06/14 11:26:47 joergr
* Corrected wrong filename creation for option +W.
*
* Revision 1.30 2000/05/03 14:19:05 meichel
* Added new class GlobalDcmDataDictionary which implements read/write lock
* semantics for safe access to the DICOM dictionary from multiple threads
* in parallel. The global dcmDataDict now uses this class.
*
* Revision 1.29 2000/03/08 16:26:05 meichel
* Updated copyright header.
*
* Revision 1.28 2000/03/06 18:09:37 joergr
* Avoid empty statement in the body of if-statements (MSVC6 reports warnings).
*
* Revision 1.27 2000/03/03 14:05:15 meichel
* Implemented library support for redirecting error messages into memory
* instead of printing them to stdout/stderr for GUI applications.
*
* Revision 1.26 2000/02/23 15:11:31 meichel
* Corrected macro for Borland C++ Builder 4 workaround.
*
* Revision 1.25 2000/02/10 11:05:25 joergr
* Modified help text for new command line option.
*
* Revision 1.23 2000/02/01 10:11:57 meichel
* Avoiding to include <stdlib.h> as extern "C" on Borland C++ Builder 4,
* workaround for bug in compiler header files.
*
* Revision 1.22 1999/04/27 17:50:50 joergr
* Adapted console applications to new OFCommandLine and OFConsoleApplication
* functionality.
*
* Revision 1.21 1999/04/26 16:38:25 joergr
* Removed bug: empty parameters have always been interpreted as options.
* Added support to check dependences between different options and report
* error messages if necessary.
*
* Revision 1.20 1999/03/31 09:24:19 meichel
* Updated copyright header in module dcmdata
*
* Revision 1.19 1999/03/29 10:14:12 meichel
* Adapted command line options of dcmdata applications to new scheme.
*
* Revision 1.18 1999/03/22 16:12:16 meichel
* Added -d <debuglevel> flag to dcmdump.
*
* Revision 1.17 1997/07/21 08:04:24 andreas
* - Replace all boolean types (BOOLEAN, CTNBOOLEAN, DICOM_BOOL, BOOL)
* with one unique boolean type OFBool.
* - With flag DEBUG dcmdump now tries to print the DICOM file even if
* an error in reading the file was detected.
*
* Revision 1.16 1997/07/03 15:09:38 andreas
* - removed debugging functions Bdebug() and Edebug() since
* they write a static array and are not very useful at all.
* Cdebug and Vdebug are merged since they have the same semantics.
* The debugging functions in dcmdata changed their interfaces
* (see dcmdata/include/dcdebug.h)
*
* Revision 1.15 1997/05/29 15:52:50 meichel
* Added constant for dcmtk release date in dcuid.h.
* All dcmtk applications now contain a version string
* which is displayed with the command line options ("usage" message)
* and which can be queried in the binary with the "ident" command.
*
* Revision 1.14 1997/05/27 13:46:53 andreas
* - Corrected usage string in dcmdump
*
* Revision 1.13 1997/05/22 16:53:32 andreas
* - Changed default options and documentation for dcmdump.
*
* Revision 1.12 1997/05/22 13:26:23 hewett
* Modified the test for presence of a data dictionary to use the
* method DcmDataDictionary::isDictionaryLoaded().
*
* Revision 1.11 1997/05/20 07:57:11 andreas
* - Removed obsolete applications file2ds and ds2file. The functionality of these
* applications is now peformed by dcmconv. Unified calling parameters
* are implemented in dump2dcm, dcmdump and dcmconv.
*
* Revision 1.10 1997/05/16 08:31:04 andreas
* - Revised handling of GroupLength elements and support of
* DataSetTrailingPadding elements. The enumeratio E_GrpLenEncoding
* got additional enumeration values (for a description see dctypes.h).
* addGroupLength and removeGroupLength methods are replaced by
* computeGroupLengthAndPadding. To support Padding, the parameters of
* element and sequence write functions changed.
*
* Revision 1.9 1997/04/18 08:04:47 andreas
* - Minor corrections: correct some warnings of the SUN-C++ Compiler
* concerning the assignments of wrong types and inline compiler
* errors
*
* Revision 1.8 1997/02/06 11:19:22 hewett
* Update for CodeWarrior 11 on Macintrosh. Now explicitly sets flags
* for the SIOUX console.
*
* Revision 1.7 1996/09/24 16:13:50 hewett
* Added preliminary support for the Macintosh environment (GUSI library).
*
* Revision 1.6 1996/09/18 16:34:16 hewett
* Added optional code to the dcmdump program to restrict its
* output to specified named tags.
*
* Revision 1.5 1996/08/05 08:43:36 andreas
* new print routine with additional parameters:
* - print into files
* - fix output length for elements
*
* Revision 1.4 1996/03/12 15:11:38 hewett
* Added call to prepareCmdLineArgs to enable command line arguments
* in environments which do not provide them.
*
* Revision 1.3 1996/01/05 13:29:34 andreas
* - new streaming facilities
* - unique read/write methods for block and file transfer
* - more cleanups
*
* Revision 1.2 1995/11/23 17:10:31 hewett
* Updated for loadable data dictionary.
*
*/
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