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/*
*
* Copyright (C) 1997-2010, OFFIS e.V.
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation were developed by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmdata
*
* Author: Andreas Barth
*
* Purpose: class DcmPixelData
*
* Last Update: $Author: joergr $
* Update Date: $Date: 2010-10-20 16:44:16 $
* CVS/RCS Revision: $Revision: 1.51 $
* Status: $State: Exp $
*
* CVS/RCS Log at end of file
*
*/
#include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */
#include "dcmtk/dcmdata/dcpixel.h"
#include "dcmtk/dcmdata/dccodec.h"
#include "dcmtk/dcmdata/dcpixseq.h"
#include "dcmtk/dcmdata/dcdeftag.h"
#include "dcmtk/dcmdata/dcitem.h"
//
// class DcmRepresentationEntry
//
DcmRepresentationEntry::DcmRepresentationEntry(
const E_TransferSyntax rt,
const DcmRepresentationParameter *rp,
DcmPixelSequence * ps)
: repType(rt),
repParam(NULL),
pixSeq(ps)
{
if (rp)
repParam = rp->clone();
}
DcmRepresentationEntry::DcmRepresentationEntry(
const DcmRepresentationEntry & oldEntry)
: repType(oldEntry.repType),
repParam(NULL),
pixSeq(NULL)
{
if (oldEntry.repParam)
repParam = oldEntry.repParam->clone();
pixSeq = new DcmPixelSequence(*(oldEntry.pixSeq));
}
DcmRepresentationEntry::~DcmRepresentationEntry()
{
delete repParam;
delete pixSeq;
}
OFBool
DcmRepresentationEntry::operator==(const DcmRepresentationEntry & x) const
{
return (repType == x.repType) &&
((x.repParam == NULL && repParam == NULL) ||
((x.repParam != NULL) && (repParam != NULL) && (*(x.repParam) == *repParam)));
}
//
// class DcmPixelData
//
// Constructors / Deconstructors
DcmPixelData::DcmPixelData(
const DcmTag & tag,
const Uint32 len)
: DcmPolymorphOBOW(tag, len),
repList(),
repListEnd(),
original(),
current(),
existUnencapsulated(OFFalse),
alwaysUnencapsulated(OFFalse),
unencapsulatedVR(EVR_UNKNOWN),
pixelSeqForWrite(NULL)
{
repListEnd = repList.end();
current = original = repListEnd;
if (getTag().getEVR() == EVR_ox) setTagVR(EVR_OW);
unencapsulatedVR = getTag().getEVR();
recalcVR();
}
DcmPixelData::DcmPixelData(
const DcmPixelData & oldPixelData)
: DcmPolymorphOBOW(oldPixelData),
repList(),
repListEnd(),
original(),
current(),
existUnencapsulated(oldPixelData.existUnencapsulated),
alwaysUnencapsulated(oldPixelData.alwaysUnencapsulated),
unencapsulatedVR(oldPixelData.unencapsulatedVR),
pixelSeqForWrite(NULL)
{
repListEnd = repList.end();
original = repListEnd;
current = original;
recalcVR();
DcmRepresentationListConstIterator oldEnd(oldPixelData.repList.end());
for (DcmRepresentationListConstIterator it(oldPixelData.repList.begin());
it != oldEnd;
++it)
{
DcmRepresentationEntry * repEnt = new DcmRepresentationEntry(**it);
repList.push_back(repEnt);
if (it == oldPixelData.original)
original = --repList.end();
if (it == oldPixelData.current)
{
current = --repList.end();
recalcVR();
}
}
}
DcmPixelData::~DcmPixelData()
{
for (DcmRepresentationListIterator it(repList.begin());
it != repListEnd;
++it)
{
delete *it;
*it = NULL;
}
}
DcmPixelData &DcmPixelData::operator=(const DcmPixelData &obj)
{
if (this != &obj)
{
DcmPolymorphOBOW::operator=(obj);
existUnencapsulated = obj.existUnencapsulated;
alwaysUnencapsulated = obj.alwaysUnencapsulated;
unencapsulatedVR = obj.unencapsulatedVR;
pixelSeqForWrite = NULL;
repList.clear();
repListEnd = repList.end();
original = repListEnd;
current = original;
recalcVR();
DcmRepresentationListConstIterator oldEnd(obj.repList.end());
DcmRepresentationListConstIterator it(obj.repList.begin());
while (it != oldEnd)
{
DcmRepresentationEntry *repEnt = new DcmRepresentationEntry(**it);
repList.push_back(repEnt);
if (it == obj.original) original = --repList.end();
if (it == current)
{
current = --repList.end();
recalcVR();
}
++it;
}
}
return *this;
}
OFCondition DcmPixelData::copyFrom(const DcmObject& rhs)
{
if (this != &rhs)
{
if (rhs.ident() != ident()) return EC_IllegalCall;
*this = OFstatic_cast(const DcmPixelData &, rhs);
}
return EC_Normal;
}
// methods in alphabetical order
Uint32
DcmPixelData::calcElementLength(
const E_TransferSyntax xfer,
const E_EncodingType enctype)
{
DcmXfer xferSyn(xfer);
errorFlag = EC_Normal;
Uint32 elementLength = 0;
if (xferSyn.isEncapsulated() && (! alwaysUnencapsulated))
{
DcmRepresentationListIterator found;
errorFlag =
findConformingEncapsulatedRepresentation(xfer, NULL, found);
if (errorFlag == EC_Normal)
elementLength = (*found)->pixSeq->calcElementLength(xfer, enctype);
}
else if (existUnencapsulated)
elementLength = DcmPolymorphOBOW::calcElementLength(xfer, enctype);
else
errorFlag = EC_RepresentationNotFound;
return elementLength;
}
OFBool
DcmPixelData::canChooseRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam)
{
OFBool result = OFFalse;
DcmXfer toType(repType);
const DcmRepresentationEntry findEntry(repType, repParam, NULL);
DcmRepresentationListIterator resultIt(repListEnd);
if ((!toType.isEncapsulated() && existUnencapsulated) ||
(toType.isEncapsulated() && alwaysUnencapsulated && existUnencapsulated) ||
(toType.isEncapsulated() && findRepresentationEntry(findEntry, resultIt) == EC_Normal))
{
// representation found
result = OFTrue;
}
else
{
// representation not found, check if we have a codec that can create the
// desired representation.
if (original == repListEnd)
{
result = DcmCodecList::canChangeCoding(EXS_LittleEndianExplicit, toType.getXfer());
}
else if (toType.isEncapsulated())
{
result = DcmCodecList::canChangeCoding(EXS_LittleEndianExplicit, toType.getXfer());
if (!result)
{
// direct transcoding is not possible. Check if we can decode and then encode.
result = canChooseRepresentation(EXS_LittleEndianExplicit, NULL);
if (result) result = DcmCodecList::canChangeCoding(EXS_LittleEndianExplicit, toType.getXfer());
}
}
else
{
result = DcmCodecList::canChangeCoding((*original)->repType, EXS_LittleEndianExplicit);
}
}
return result;
}
OFBool
DcmPixelData::canWriteXfer(
const E_TransferSyntax newXfer,
const E_TransferSyntax /*oldXfer*/)
{
DcmXfer newXferSyn(newXfer);
DcmRepresentationListIterator found;
OFBool result = existUnencapsulated && (!newXferSyn.isEncapsulated() || alwaysUnencapsulated);
if (!result && newXferSyn.isEncapsulated())
result = (findConformingEncapsulatedRepresentation(newXferSyn, NULL, found) == EC_Normal);
return result;
}
OFCondition
DcmPixelData::chooseRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam,
DcmStack & pixelStack)
{
OFCondition l_error = EC_CannotChangeRepresentation;
DcmXfer toType(repType);
const DcmRepresentationEntry findEntry(repType, repParam, NULL);
DcmRepresentationListIterator result(repListEnd);
if ((!toType.isEncapsulated() && existUnencapsulated) ||
(toType.isEncapsulated() && existUnencapsulated && alwaysUnencapsulated) ||
(toType.isEncapsulated() && findRepresentationEntry(findEntry, result) == EC_Normal))
{
// representation found
current = result;
recalcVR();
l_error = EC_Normal;
}
else
{
if (original == repListEnd)
l_error = encode(EXS_LittleEndianExplicit, NULL, NULL,
toType, repParam, pixelStack);
else if (toType.isEncapsulated())
l_error = encode((*original)->repType, (*original)->repParam,
(*original)->pixSeq, toType, repParam, pixelStack);
else
l_error = decode((*original)->repType, (*original)->repParam,
(*original)->pixSeq, pixelStack);
}
return l_error;
}
void
DcmPixelData::clearRepresentationList(
DcmRepresentationListIterator leaveInList)
{
/* define iterators to go through all representations in the list */
DcmRepresentationListIterator it(repList.begin());
DcmRepresentationListIterator del;
/* as long as we have not encountered the end of the */
/* representation list, go through all representations */
while (it != repListEnd)
{
/* if this representation shall not be left in the list */
if (it != leaveInList)
{
/* delete representation and move it to the next representation */
delete *it;
del = it++;
repList.erase(del);
}
/* else leave this representation in the list and just go to the next */
else
++it;
}
}
OFCondition
DcmPixelData::decode(
const DcmXfer & fromType,
const DcmRepresentationParameter * fromParam,
DcmPixelSequence * fromPixSeq,
DcmStack & pixelStack)
{
if (existUnencapsulated) return EC_Normal;
OFCondition l_error = DcmCodecList::decode(fromType, fromParam, fromPixSeq, *this, pixelStack);
if (l_error.good())
{
existUnencapsulated = OFTrue;
current = repListEnd;
setVR(EVR_OW);
recalcVR();
}
else
{
DcmPolymorphOBOW::putUint16Array(NULL,0);
existUnencapsulated = OFFalse;
}
return l_error;
}
OFCondition
DcmPixelData::encode(
const DcmXfer & fromType,
const DcmRepresentationParameter * fromParam,
DcmPixelSequence * fromPixSeq,
const DcmXfer & toType,
const DcmRepresentationParameter *toParam,
DcmStack & pixelStack)
{
OFCondition l_error = EC_CannotChangeRepresentation;
if (toType.isEncapsulated())
{
DcmPixelSequence * toPixSeq = NULL;
if (fromType.isEncapsulated())
{
l_error = DcmCodecList::encode(fromType.getXfer(), fromParam, fromPixSeq,
toType.getXfer(), toParam, toPixSeq, pixelStack);
}
else
{
Uint16 * pixelData;
l_error = DcmPolymorphOBOW::getUint16Array(pixelData);
Uint32 length = DcmPolymorphOBOW::getLength();
if (l_error == EC_Normal)
{
l_error = DcmCodecList::encode(fromType.getXfer(), pixelData, length,
toType.getXfer(), toParam, toPixSeq, pixelStack);
}
}
if (l_error.good())
{
current = insertRepresentationEntry(
new DcmRepresentationEntry(toType.getXfer(), toParam, toPixSeq));
recalcVR();
} else delete toPixSeq;
// if it was possible to convert one encapsulated syntax into
// another directly try it using decoding and encoding!
if (l_error.bad() && fromType.isEncapsulated())
{
l_error = decode(fromType, fromParam, fromPixSeq, pixelStack);
if (l_error.good()) l_error = encode(EXS_LittleEndianExplicit, NULL, NULL, toType, toParam, pixelStack);
}
}
return l_error;
}
OFCondition
DcmPixelData::findRepresentationEntry(
const DcmRepresentationEntry & findEntry,
DcmRepresentationListIterator & result)
{
result = repList.begin();
while(result != repListEnd &&
(*result)->repType < findEntry.repType)
++result;
DcmRepresentationListIterator it(result);
while(it != repListEnd && **it != findEntry)
++it;
if (it == repListEnd || **it != findEntry)
return EC_RepresentationNotFound;
else
{
result = it;
return EC_Normal;
}
}
OFCondition
DcmPixelData::findConformingEncapsulatedRepresentation(
const DcmXfer & repTypeSyn,
const DcmRepresentationParameter * repParam,
DcmRepresentationListIterator & result)
{
E_TransferSyntax repType = repTypeSyn.getXfer();
result = repListEnd;
OFCondition l_error = EC_RepresentationNotFound;
// we are looking for an encapsulated representation
// of this pixel data element which meets both
// the transfer syntax and (if given) the representation
// parameter (i.e. quality factor for lossy JPEG).
if (repTypeSyn.isEncapsulated())
{
// first we check the current (active) representation if any.
if ((current != repListEnd) && ((*current)->repType == repType) &&
((repParam==NULL) || (((*current)->repParam != NULL)&&(*(*current)->repParam == *repParam))))
{
result = current;
l_error = EC_Normal;
}
else
{
// now we check all representations
DcmRepresentationListIterator it(repList.begin());
OFBool found = OFFalse;
while (!found && (it != repListEnd))
{
if ((*it)->repType == repType)
{
if ((repParam == NULL) || (((*it)->repParam != NULL)&&(*(*it)->repParam == *repParam)))
{
// repParam is NULL or matches the one we are comparing with
found = OFTrue;
result = it;
l_error = EC_Normal;
} else ++it;
} else ++it;
}
}
}
return l_error;
}
OFCondition
DcmPixelData::getEncapsulatedRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam,
DcmPixelSequence * & pixSeq)
{
DcmRepresentationListIterator found;
DcmRepresentationEntry findEntry(repType, repParam, NULL);
if (findRepresentationEntry(findEntry, found) == EC_Normal)
{
pixSeq = (*found)->pixSeq;
return EC_Normal;
}
return EC_RepresentationNotFound;
}
OFBool
DcmPixelData::hasRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam)
{
DcmXfer repTypeSyn(repType);
DcmRepresentationListIterator found;
if (!repTypeSyn.isEncapsulated() && existUnencapsulated)
return OFTrue;
else if (repTypeSyn.isEncapsulated())
return findConformingEncapsulatedRepresentation(repTypeSyn, repParam, found).good();
return OFFalse;
}
Uint32
DcmPixelData::getLength(const E_TransferSyntax xfer,
const E_EncodingType enctype)
{
DcmXfer xferSyn(xfer);
errorFlag = EC_Normal;
Uint32 valueLength = 0;
if (xferSyn.isEncapsulated() && !alwaysUnencapsulated)
{
DcmRepresentationListIterator foundEntry;
errorFlag = findConformingEncapsulatedRepresentation(
xferSyn, NULL, foundEntry);
if (errorFlag == EC_Normal)
valueLength = (*foundEntry)->pixSeq->getLength(xfer, enctype);
}
else if (existUnencapsulated)
valueLength = DcmPolymorphOBOW::getLength(xfer, enctype);
else
errorFlag = EC_RepresentationNotFound;
return valueLength;
}
void
DcmPixelData::getCurrentRepresentationKey(
E_TransferSyntax & repType,
const DcmRepresentationParameter * & repParam)
{
if (current != repListEnd)
{
repType = (*current)->repType;
repParam = (*current)->repParam;
}
else
{
repType = EXS_LittleEndianExplicit;
repParam = NULL;
}
}
void
DcmPixelData::getOriginalRepresentationKey(
E_TransferSyntax & repType,
const DcmRepresentationParameter * & repParam)
{
if (original != repListEnd)
{
repType = (*original)->repType;
repParam = (*original)->repParam;
}
else
{
repType = EXS_LittleEndianExplicit;
repParam = NULL;
}
}
DcmRepresentationListIterator
DcmPixelData::insertRepresentationEntry(
DcmRepresentationEntry * repEntry)
{
DcmRepresentationListIterator insertedEntry;
DcmRepresentationListIterator result;
if (findRepresentationEntry(*repEntry, result).good())
{
// this type of representation entry was already present in the list
if (repEntry != *result)
{
insertedEntry = repList.insert(result, repEntry);
// delete old entry from representation list
delete *result;
repList.erase(result);
}
}
else
insertedEntry = repList.insert(result,repEntry);
return insertedEntry;
}
void
DcmPixelData::print(
STD_NAMESPACE ostream&out,
const size_t flags,
const int level,
const char *pixelFileName,
size_t *pixelCounter)
{
if (current == repListEnd)
printPixel(out, flags, level, pixelFileName, pixelCounter);
else
(*current)->pixSeq->print(out, flags, level, pixelFileName, pixelCounter);
}
OFCondition
DcmPixelData::putUint8Array(
const Uint8 * byteValue,
const unsigned long length)
{
// clear RepresentationList
clearRepresentationList(repListEnd);
OFCondition l_error = DcmPolymorphOBOW::putUint8Array(byteValue, length);
original = current = repListEnd;
recalcVR();
existUnencapsulated = OFTrue;
return l_error;
}
OFCondition
DcmPixelData::putUint16Array(
const Uint16 * wordValue,
const unsigned long length)
{
// clear RepresentationList
clearRepresentationList(repListEnd);
OFCondition l_error = DcmPolymorphOBOW::putUint16Array(wordValue, length);
original = current = repListEnd;
recalcVR();
existUnencapsulated = OFTrue;
return l_error;
}
OFCondition
DcmPixelData::createUint8Array(
const Uint32 numBytes,
Uint8 * & bytes)
{
OFCondition l_error = DcmPolymorphOBOW::createUint8Array(numBytes, bytes);
existUnencapsulated = OFTrue;
return l_error;
}
OFCondition
DcmPixelData::createUint16Array(
const Uint32 numWords,
Uint16 * & words)
{
OFCondition l_error = DcmPolymorphOBOW::createUint16Array(numWords, words);
existUnencapsulated = OFTrue;
return l_error;
}
OFCondition
DcmPixelData::createValueFromTempFile(
DcmInputStreamFactory *factory,
const Uint32 length,
const E_ByteOrder byteOrder)
{
OFCondition l_error = DcmPolymorphOBOW::createValueFromTempFile(factory, length, byteOrder);
existUnencapsulated = OFTrue;
return l_error;
}
void
DcmPixelData::putOriginalRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam,
DcmPixelSequence * pixSeq)
{
// delete RepresentationList
clearRepresentationList(repListEnd);
// delete unencapsulated representation
DcmPolymorphOBOW::putUint16Array(NULL,0);
existUnencapsulated = OFFalse;
// insert new Representation
current = original = insertRepresentationEntry(
new DcmRepresentationEntry(repType, repParam, pixSeq));
recalcVR();
}
OFCondition
DcmPixelData::read(
DcmInputStream & inStream,
const E_TransferSyntax ixfer,
const E_GrpLenEncoding glenc,
const Uint32 maxReadLength)
{
/* if this element's transfer state shows ERW_notInitialized, this is an illegal call */
if (getTransferState() == ERW_notInitialized)
errorFlag = EC_IllegalCall;
else
{
/* if this is not an illegal call, go ahead */
/* if the transfer state is ERW_init, we need to prepare the reading of the pixel */
/* data from the stream: remove all representations from the representation list. */
if (getTransferState() == ERW_init)
clearRepresentationList(repListEnd);
/* create a DcmXfer object based on the transfer syntax which was passed */
DcmXfer ixferSyn(ixfer);
/* determine if the pixel data is captured in native (uncompressed) or encapsulated
* (compressed) format. We only derive this information from the length field
* which is set to undefined length for encapsulated data because even in
* compressed transfer syntaxes the Icon Image Sequence may contain an
* uncompressed image.
*/
if (getLengthField() == DCM_UndefinedLength)
{
/* the pixel data is captured in encapsulated (compressed) format */
/* if the transfer state is ERW_init, we need to prepare */
/* the reading of the pixel data from the stream. */
if (getTransferState() == ERW_init)
{
current = insertRepresentationEntry(
new DcmRepresentationEntry(
ixfer, NULL, new DcmPixelSequence(getTag(), getLengthField())));
recalcVR();
original = current;
existUnencapsulated = OFFalse;
setTransferState(ERW_inWork);
if (! ixferSyn.isEncapsulated())
{
/* Special case: we have encountered a compressed image
* although we're decoding an uncompressed transfer syntax.
* This could be a compressed image stored without meta-header.
* For now, we just accept the data element; however, any attempt
* to write the dataset will fail because no suitable decoder
* is known.
*/
}
}
/* conduct the reading process */
errorFlag =
(*current)->pixSeq->read(inStream, ixfer, glenc, maxReadLength);
/* if the errorFlag equals EC_Normal, all pixel data has been */
/* read; hence, the transfer state has to be set to ERW_ready */
if (errorFlag == EC_Normal)
setTransferState(ERW_ready);
}
else
{
/* the pixel data is captured in native (uncompressed) format */
/* if the transfer state is ERW_init, we need to prepare */
/* the reading of the pixel data from the stream. */
if (getTransferState() == ERW_init)
{
current = original = repListEnd;
unencapsulatedVR = getTag().getEVR();
recalcVR();
existUnencapsulated = OFTrue;
if (ixferSyn.isEncapsulated())
{
/* Special case: we have encountered an uncompressed image
* although we're decoding an encapsulated transfer syntax.
* This is probably an icon image.
*/
alwaysUnencapsulated = OFTrue;
}
}
/* conduct the reading process */
errorFlag =
DcmPolymorphOBOW::read(inStream, ixfer, glenc, maxReadLength);
}
}
/* return result value */
return errorFlag;
}
void
DcmPixelData::removeAllButCurrentRepresentations()
{
clearRepresentationList(current);
if (current != repListEnd && existUnencapsulated)
{
DcmPolymorphOBOW::putUint16Array(NULL,0);
existUnencapsulated = OFFalse;
}
original = current;
}
void
DcmPixelData::removeAllButOriginalRepresentations()
{
clearRepresentationList(original);
if (original != repListEnd && existUnencapsulated)
{
DcmPolymorphOBOW::putUint16Array(NULL,0);
existUnencapsulated = OFFalse;
}
current = original;
recalcVR();
}
OFCondition
DcmPixelData::removeOriginalRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam)
{
OFCondition l_error = EC_Normal;
DcmXfer repTypeSyn(repType);
if (!repTypeSyn.isEncapsulated())
{
if (original != repListEnd)
{
if (current == original)
{
current = repListEnd;
recalcVR();
}
repList.erase(original);
original = repListEnd;
}
else
l_error = EC_IllegalCall;
}
else
{
DcmRepresentationListIterator result;
DcmRepresentationEntry findEntry(repType, repParam, NULL);
if (findRepresentationEntry(findEntry, result) == EC_Normal)
{
if (result != original)
{
if (current == original)
{
current = result;
recalcVR();
}
if (original == repListEnd)
{
DcmPolymorphOBOW::putUint16Array(NULL, 0);
existUnencapsulated = OFFalse;
}
else
repList.erase(original);
original = result;
}
else
l_error = EC_IllegalCall;
}
else
l_error = EC_RepresentationNotFound;
}
return l_error;
}
OFCondition
DcmPixelData::removeRepresentation(
const E_TransferSyntax repType,
const DcmRepresentationParameter * repParam)
{
OFCondition l_error = EC_Normal;
DcmXfer repTypeSyn(repType);
if (!repTypeSyn.isEncapsulated())
{
if (original != repListEnd && existUnencapsulated)
{
DcmPolymorphOBOW::putUint16Array(NULL, 0);
existUnencapsulated = OFFalse;
}
else
l_error = EC_CannotChangeRepresentation;
}
else
{
DcmRepresentationListIterator result;
DcmRepresentationEntry findEntry(repType, repParam, NULL);
if (findRepresentationEntry(findEntry, result) == EC_Normal)
{
if (original != result)
repList.erase(result);
else l_error = EC_CannotChangeRepresentation;
}
else
l_error = EC_RepresentationNotFound;
}
return l_error;
}
OFCondition
DcmPixelData::setCurrentRepresentationParameter(
const DcmRepresentationParameter * repParam)
{
if (current != repListEnd)
{
if (repParam == NULL)
(*current)->repParam = NULL;
else
(*current)->repParam = repParam->clone();
return EC_Normal;
}
return EC_RepresentationNotFound;
}
OFCondition
DcmPixelData::setVR(DcmEVR vr)
{
unencapsulatedVR = vr;
return DcmPolymorphOBOW::setVR(vr);
}
void
DcmPixelData::transferEnd()
{
DcmPolymorphOBOW::transferEnd();
for (DcmRepresentationListIterator it(repList.begin());
it != repListEnd;
++it)
(*it)->pixSeq->transferEnd();
}
void
DcmPixelData::transferInit()
{
DcmPolymorphOBOW::transferInit();
for (DcmRepresentationListIterator it(repList.begin());
it != repListEnd;
++it)
(*it)->pixSeq->transferInit();
}
OFCondition DcmPixelData::write(
DcmOutputStream &outStream,
const E_TransferSyntax oxfer,
const E_EncodingType enctype,
DcmWriteCache *wcache)
{
errorFlag = EC_Normal;
if (getTransferState() == ERW_notInitialized) errorFlag = EC_IllegalCall;
else
{
DcmXfer xferSyn(oxfer);
if (xferSyn.isEncapsulated() && (! alwaysUnencapsulated))
{
if (getTransferState() == ERW_init)
{
DcmRepresentationListIterator found;
errorFlag = findConformingEncapsulatedRepresentation(xferSyn, NULL, found);
if (errorFlag == EC_Normal)
{
current = found;
recalcVR();
pixelSeqForWrite = (*found)->pixSeq;
setTransferState(ERW_inWork);
}
}
if (errorFlag == EC_Normal && pixelSeqForWrite) errorFlag = pixelSeqForWrite->write(outStream, oxfer, enctype, wcache);
if (errorFlag == EC_Normal) setTransferState(ERW_ready);
}
else if (existUnencapsulated)
{
current = repListEnd;
recalcVR();
errorFlag = DcmPolymorphOBOW::write(outStream, oxfer, enctype, wcache);
}
else if (getValue() == NULL)
{
errorFlag = DcmPolymorphOBOW::write(outStream, oxfer, enctype, wcache);
} else errorFlag = EC_RepresentationNotFound;
}
return errorFlag;
}
OFCondition DcmPixelData::writeXML(
STD_NAMESPACE ostream&out,
const size_t flags)
{
if (current == repListEnd)
{
errorFlag = DcmPolymorphOBOW::writeXML(out, flags);
} else {
/* pixel sequence (encapsulated data) */
errorFlag = (*current)->pixSeq->writeXML(out, flags);
}
return errorFlag;
}
OFCondition DcmPixelData::writeSignatureFormat(
DcmOutputStream &outStream,
const E_TransferSyntax oxfer,
const E_EncodingType enctype,
DcmWriteCache *wcache)
{
errorFlag = EC_Normal;
if (getTransferState() == ERW_notInitialized) errorFlag = EC_IllegalCall;
else if (getTag().isSignable())
{
DcmXfer xferSyn(oxfer);
if (xferSyn.isEncapsulated() && (! alwaysUnencapsulated))
{
if (getTransferState() == ERW_init)
{
DcmRepresentationListIterator found;
errorFlag = findConformingEncapsulatedRepresentation(xferSyn, NULL, found);
if (errorFlag == EC_Normal)
{
current = found;
recalcVR();
pixelSeqForWrite = (*found)->pixSeq;
setTransferState(ERW_inWork);
}
}
if (errorFlag == EC_Normal && pixelSeqForWrite) errorFlag = pixelSeqForWrite->writeSignatureFormat(outStream, oxfer, enctype, wcache);
if (errorFlag == EC_Normal) setTransferState(ERW_ready);
}
else if (existUnencapsulated)
{
current = repListEnd;
recalcVR();
errorFlag = DcmPolymorphOBOW::writeSignatureFormat(outStream, oxfer, enctype, wcache);
}
else if (getValue() == NULL)
{
errorFlag = DcmPolymorphOBOW::writeSignatureFormat(outStream, oxfer, enctype, wcache);
} else errorFlag = EC_RepresentationNotFound;
} else errorFlag = EC_Normal;
return errorFlag;
}
OFCondition DcmPixelData::loadAllDataIntoMemory(void)
{
if (current == repListEnd)
return DcmElement::loadAllDataIntoMemory();
else
return (*current)->pixSeq->loadAllDataIntoMemory();
}
void DcmPixelData::setNonEncapsulationFlag(OFBool flag)
{
alwaysUnencapsulated = flag;
}
OFCondition DcmPixelData::getUncompressedFrame(
DcmItem *dataset,
Uint32 frameNo,
Uint32& startFragment,
void *buffer,
Uint32 bufSize,
OFString& decompressedColorModel,
DcmFileCache *cache)
{
if ((dataset == NULL) || (buffer == NULL)) return EC_IllegalCall;
Sint32 numberOfFrames = 1;
dataset->findAndGetSint32(DCM_NumberOfFrames, numberOfFrames); // don't fail if absent
if (numberOfFrames < 1) numberOfFrames = 1;
Uint32 frameSize;
OFCondition result = getUncompressedFrameSize(dataset, frameSize);
if (result.bad()) return result;
// determine the minimum buffer size, which may be frame size plus one pad byte if frame size is odd.
// We need this extra byte, because the image might be in a different
// endianness than our host cpu. In this case the decoder will swap
// the data to the host byte order which could overflow the buffer.
Uint32 minBufSize = frameSize;
if (minBufSize & 1) ++minBufSize;
if (bufSize < minBufSize) return EC_IllegalCall;
// check frame number
if (frameNo >= OFstatic_cast(Uint32, numberOfFrames)) return EC_IllegalCall;
if (existUnencapsulated)
{
// we already have an uncompressed version of the pixel data
// either in memory or in file. We can directly access this using
// DcmElement::getPartialValue.
result = getPartialValue(buffer, frameNo * frameSize, frameSize, cache);
if (result.good()) result = dataset->findAndGetOFString(DCM_PhotometricInterpretation, decompressedColorModel);
}
else
{
// we only have a compressed version of the pixel data.
// Identify a codec for decompressing the frame.
result = DcmCodecList::decodeFrame(
(*original)->repType, (*original)->repParam, (*original)->pixSeq,
dataset, frameNo, startFragment, buffer, bufSize, decompressedColorModel);
}
return result;
}
OFCondition DcmPixelData::getDecompressedColorModel(
DcmItem *dataset,
OFString &decompressedColorModel)
{
OFCondition result = EC_IllegalCall;
if (dataset != NULL)
{
if (existUnencapsulated)
{
// we already have an uncompressed version of the pixel data either in memory or in file,
// so just retrieve the color model from the given dataset
result = dataset->findAndGetOFString(DCM_PhotometricInterpretation, decompressedColorModel);
} else {
// we only have a compressed version of the pixel data.
// Identify a codec for determining the color model.
result = DcmCodecList::determineDecompressedColorModel(
(*original)->repType, (*original)->repParam, (*original)->pixSeq,
dataset, decompressedColorModel);
}
}
return result;
}
/*
** CVS/RCS Log:
** $Log: dcpixel.cc,v $
** Revision 1.51 2010-10-20 16:44:16 joergr
** Use type cast macros (e.g. OFstatic_cast) where appropriate.
**
** Revision 1.50 2010-10-14 13:14:08 joergr
** Updated copyright header. Added reference to COPYRIGHT file.
**
** Revision 1.49 2010-07-02 12:34:42 uli
** Added comment explaining why an even buffer size is required.
**
** Revision 1.48 2010-03-01 09:08:45 uli
** Removed some unnecessary include directives in the headers.
**
** Revision 1.47 2009-11-17 16:41:26 joergr
** Added new method that allows for determining the color model of the
** decompressed image.
**
** Revision 1.46 2009-05-11 16:10:14 meichel
** DcmPixelData::getUncompressedFrame() now returns color model also
** for uncompressed images.
**
** Revision 1.45 2009-05-11 16:06:51 meichel
** DcmPixelData::getUncompressedFrame() now works with uncompressed multi-frame
** images with odd frame size.
**
** Revision 1.44 2009-01-30 13:28:14 joergr
** Fixed bug in hasRepresentation() which returned the wrong status in case of
** compressed pixel data.
**
** Revision 1.43 2008-11-03 14:29:45 joergr
** Added method createValueFromTempFile() - overrides method in DcmElement.
**
** Revision 1.42 2008-07-17 10:31:31 onken
** Implemented copyFrom() method for complete DcmObject class hierarchy, which
** permits setting an instance's value from an existing object. Implemented
** assignment operator where necessary.
**
** Revision 1.41 2008-05-29 10:46:16 meichel
** Implemented new method DcmPixelData::getUncompressedFrame
** that permits frame-wise access to compressed and uncompressed
** objects without ever loading the complete object into main memory.
** For this new method to work with compressed images, all classes derived from
** DcmCodec need to implement a new method decodeFrame(). For now, only
** dummy implementations returning an error code have been defined.
**
** Revision 1.40 2007/11/29 14:30:21 meichel
** Write methods now handle large raw data elements (such as pixel data)
** without loading everything into memory. This allows very large images to
** be sent over a network connection, or to be copied without ever being
** fully in memory.
**
** Revision 1.39 2007/06/29 14:17:49 meichel
** Code clean-up: Most member variables in module dcmdata are now private,
** not protected anymore.
**
** Revision 1.38 2006/08/15 15:49:54 meichel
** Updated all code in module dcmdata to correctly compile when
** all standard C++ classes remain in namespace std.
**
** Revision 1.37 2005/12/08 15:41:25 meichel
** Changed include path schema for all DCMTK header files
**
** Revision 1.36 2005/05/26 09:06:55 meichel
** Renamed isIconImage flag to alwaysUnencapsulated to clarify meaning.
** Added public method DcmPixelData::setNonEncapsulationFlag() that allows
** DcmCodec instances to enable the flag. Improved documentation.
**
** Revision 1.35 2004/07/01 12:28:12 meichel
** Fixed copy constructor for class DcmPixelData which did not work correctly
** under certain circumstances due to an uninitialized attribute.
**
** Revision 1.34 2004/04/07 13:56:08 meichel
** Compressed image datasets containing uncompressed icon images
** are now correctly handled by the parser.
**
** Revision 1.33 2004/01/16 13:49:53 joergr
** Removed acknowledgements with e-mail addresses from CVS log.
**
** Revision 1.32 2003/06/12 18:22:23 joergr
** Modified code to use const_iterators where appropriate (required for STL).
**
** Revision 1.31 2003/06/02 16:55:41 meichel
** Cleaned up implementation of DcmRepresentationEntry, added doc++ comments
**
** Revision 1.30 2003/04/03 14:30:37 joergr
** Fixed bug introduced in the context of the new createUint8/16Array() methods.
**
** Revision 1.29 2003/04/01 12:35:17 joergr
** Added implementation of createUint8/16Array() methods to DcmPixelData.
** Required to work properly with chooseRepresentation() for pixel compression.
**
** Revision 1.28 2003/03/21 13:08:04 meichel
** Minor code purifications for warnings reported by MSVC in Level 4
**
** Revision 1.27 2002/12/09 09:30:54 wilkens
** Modified/Added doc++ documentation.
**
** Revision 1.26 2002/12/06 13:16:57 joergr
** Enhanced "print()" function by re-working the implementation and replacing
** the boolean "showFullData" parameter by a more general integer flag.
** Made source code formatting more consistent with other modules/files.
**
** Revision 1.25 2002/09/17 13:22:45 meichel
** Fixed two bugs in class DcmPixelData.
**
** Revision 1.24 2002/09/10 15:24:04 meichel
** Fixed two issues in parser. Dcmdata will now correctly parse compressed
** data sets containing uncompressed pixel data (e.g. icon images) and
** uncompressed data sets containing compressed pixel data (e.g. compressed
** file but meta-header missing). Note that write-back of such datasets will
** fail unless appropriate compression codecs are registered.
**
** Revision 1.23 2002/08/27 16:55:54 meichel
** Initial release of new DICOM I/O stream classes that add support for stream
** compression (deflated little endian explicit VR transfer syntax)
**
** Revision 1.22 2002/07/10 11:49:30 meichel
** Fixed memory leak that occured when compression of an image failed in
** a compression codec.
**
** Revision 1.21 2002/04/25 10:19:53 joergr
** Added support for XML output of DICOM objects.
**
** Revision 1.20 2001/11/08 16:19:42 meichel
** Changed interface for codec registration. Now everything is thread-safe
** and multiple codecs can be registered for a single transfer syntax (e.g.
** one encoder and one decoder).
**
** Revision 1.19 2001/11/01 14:55:42 wilkens
** Added lots of comments.
**
** Revision 1.18 2001/09/25 17:18:36 meichel
** Updated abstract class DcmRepresentationParameter for use with dcmjpeg
**
** Revision 1.17 2001/06/01 15:49:07 meichel
** Updated copyright header
**
** Revision 1.16 2001/05/25 09:53:54 meichel
** Modified DcmCodec::decode() interface, required for future dcmjpeg module.
**
** Revision 1.15 2000/11/07 16:56:21 meichel
** Initial release of dcmsign module for DICOM Digital Signatures
**
** Revision 1.14 2000/09/27 08:19:58 meichel
** Minor changes in DcmCodec interface, required for future dcmjpeg module.
**
** Revision 1.13 2000/04/14 16:09:16 meichel
** Made function DcmCodec and related functions thread safe.
** registerGlobalCodec() should not be called anymore from the constructor
** of global objects.
**
** Revision 1.12 2000/03/08 16:26:39 meichel
** Updated copyright header.
**
** Revision 1.11 2000/02/10 16:04:07 joergr
** Fixed bug producing an error message when trying to create an empty
** PixelData element.
**
** Revision 1.10 2000/02/10 10:52:21 joergr
** Added new feature to dcmdump (enhanced print method of dcmdata): write
** pixel data/item value fields to raw files.
**
** Revision 1.9 2000/02/03 16:30:19 joergr
** Fixed bug: encapsulated data (pixel items) have never been loaded using
** method 'loadAllDataIntoMemory'. Therefore, encapsulated pixel data was
** never printed with 'dcmdump'.
**
** Revision 1.8 1999/04/21 15:48:15 meichel
** Fixed bug in DcmPixelData::findConformingEncapsulatedRepresentation
** leading to an assertion failure when working with compressed data.
**
** Revision 1.7 1999/03/31 09:25:35 meichel
** Updated copyright header in module dcmdata
**
** Revision 1.6 1998/11/12 16:48:17 meichel
** Implemented operator= for all classes derived from DcmObject.
**
** Revision 1.5 1998/07/15 15:52:04 joergr
** Removed several compiler warnings reported by gcc 2.8.1 with
** additional options, e.g. missing copy constructors and assignment
** operators, initialization of member variables in the body of a
** constructor instead of the member initialization list, hiding of
** methods by use of identical names, uninitialized member variables,
** missing const declaration of char pointers. Replaced tabs by spaces.
**
** Revision 1.4 1997/09/18 08:10:55 meichel
** Many minor type conflicts (e.g. long passed as int) solved.
**
** Revision 1.3 1997/07/31 06:59:35 andreas
** Added initialization of error code in
** DcmPixelData::removeOriginalRepresentation()
**
** Revision 1.2 1997/07/24 13:08:28 andreas
** - Removed const for method DcmRepresentationParameter::copy
**
** Revision 1.1 1997/07/21 07:55:05 andreas
** - New environment for encapsulated pixel representations. DcmPixelData
** can contain different representations and uses codecs to convert
** between them. Codecs are derived from the DcmCodec class. New error
** codes are introduced for handling of representations. New internal
** value representation (only for ident()) for PixelData
**
*/
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