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/*
*
* Copyright (C) 1994-2010, OFFIS e.V.
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation were developed by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmdata
*
* Author: Gerd Ehlers, Andreas Barth
*
* Purpose: Implementation of class DcmPixelItem
*
* Last Update: $Author: joergr $
* Update Date: $Date: 2010-10-20 16:44:16 $
* CVS/RCS Revision: $Revision: 1.43 $
* Status: $State: Exp $
*
* CVS/RCS Log at end of file
*
*/
#include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */
#define INCLUDE_CSTDLIB
#define INCLUDE_CSTDIO
#define INCLUDE_CSTRING
#include "dcmtk/ofstd/ofstdinc.h"
#include "dcmtk/ofstd/ofstream.h"
#include "dcmtk/dcmdata/dcpxitem.h"
#include "dcmtk/dcmdata/dcswap.h"
#include "dcmtk/ofstd/ofstring.h"
#include "dcmtk/ofstd/ofstd.h"
#include "dcmtk/dcmdata/dcistrma.h" /* for class DcmInputStream */
#include "dcmtk/dcmdata/dcostrma.h" /* for class DcmOutputStream */
#include "dcmtk/dcmdata/dcwcache.h" /* for class DcmWriteCache */
// ********************************
DcmPixelItem::DcmPixelItem(const DcmTag &tag,
const Uint32 len)
: DcmOtherByteOtherWord(tag, len)
{
setTagVR(EVR_pixelItem);
}
DcmPixelItem::DcmPixelItem(const DcmPixelItem &old)
: DcmOtherByteOtherWord(old)
{
}
OFCondition DcmPixelItem::copyFrom(const DcmObject &rhs)
{
if (this != &rhs)
{
if (rhs.ident() != ident()) return EC_IllegalCall;
*this = OFstatic_cast(const DcmPixelItem &, rhs);
}
return EC_Normal;
}
DcmPixelItem::~DcmPixelItem()
{
}
// ********************************
OFCondition DcmPixelItem::writeTagAndLength(DcmOutputStream &outStream,
const E_TransferSyntax oxfer,
Uint32 &writtenBytes) const
{
OFCondition l_error = outStream.status();
if (l_error.good())
{
/* write tag information */
l_error = writeTag(outStream, getTag(), oxfer);
writtenBytes = 4;
/* prepare to write the value field */
Uint32 valueLength = getLengthField();
DcmXfer outXfer(oxfer);
/* check byte-ordering */
const E_ByteOrder oByteOrder = outXfer.getByteOrder();
if (oByteOrder == EBO_unknown)
{
return EC_IllegalCall;
}
swapIfNecessary(oByteOrder, gLocalByteOrder, &valueLength, 4, 4);
// availability of four bytes space in output buffer
// has been checked by caller.
writtenBytes += OFstatic_cast(Uint32, outStream.write(&valueLength, 4));
} else
writtenBytes = 0;
return l_error;
}
void DcmPixelItem::print(STD_NAMESPACE ostream &out,
const size_t flags,
const int level,
const char *pixelFileName,
size_t *pixelCounter)
{
/* call inherited method */
printPixel(out, flags, level, pixelFileName, pixelCounter);
}
OFCondition DcmPixelItem::createOffsetTable(const DcmOffsetList &offsetList)
{
OFCondition result = EC_Normal;
unsigned long numEntries = offsetList.size();
if (numEntries > 0)
{
Uint32 current = 0;
Uint32 *array = new Uint32[numEntries];
if (array)
{
DCMDATA_DEBUG("DcmPixelItem: creating offset table with " << numEntries << " entries");
OFListConstIterator(Uint32) first = offsetList.begin();
OFListConstIterator(Uint32) last = offsetList.end();
unsigned long idx = 0;
while ((first != last) && result.good())
{
// check for odd offset values, should never happen at this point
if (current & 1)
{
DCMDATA_WARN("DcmPixelItem: odd frame size (" << current << ") found for frame #"
<< (idx + 1) << ", cannot create offset table");
result = EC_InvalidBasicOffsetTable;
} else {
array[idx++] = current;
current += *first;
++first;
}
}
if (result.good())
{
result = swapIfNecessary(EBO_LittleEndian, gLocalByteOrder, array, numEntries * sizeof(Uint32), sizeof(Uint32));
if (result.good())
result = putUint8Array(OFreinterpret_cast(Uint8 *, array), numEntries * sizeof(Uint32));
}
delete[] array;
} else
result = EC_MemoryExhausted;
}
return result;
}
OFCondition DcmPixelItem::writeXML(STD_NAMESPACE ostream&out,
const size_t flags)
{
/* XML start tag for "item" */
out << "<pixel-item";
/* value length in bytes = 0..max */
out << " len=\"" << getLengthField() << "\"";
/* value loaded = no (or absent)*/
if (!valueLoaded())
out << " loaded=\"no\"";
/* pixel item contains binary data */
if (!(flags & DCMTypes::XF_writeBinaryData))
out << " binary=\"hidden\"";
else if (flags & DCMTypes::XF_encodeBase64)
out << " binary=\"base64\"";
else
out << " binary=\"yes\"";
out << ">";
/* write element value (if loaded) */
if (valueLoaded() && (flags & DCMTypes::XF_writeBinaryData))
{
/* encode binary data as Base64 */
if (flags & DCMTypes::XF_encodeBase64)
{
/* pixel items always contain 8 bit data, therefore, byte swapping not required */
OFStandard::encodeBase64(out, OFstatic_cast(Uint8 *, getValue()), OFstatic_cast(size_t, getLengthField()));
} else {
/* get and check 8 bit data */
Uint8 *byteValues = NULL;
if (getUint8Array(byteValues).good() && (byteValues != NULL))
{
const unsigned long count = getLengthField();
out << STD_NAMESPACE hex << STD_NAMESPACE setfill('0');
/* print byte values in hex mode */
out << STD_NAMESPACE setw(2) << OFstatic_cast(int, *(byteValues++));
for (unsigned long i = 1; i < count; i++)
out << "\\" << STD_NAMESPACE setw(2) << OFstatic_cast(int, *(byteValues++));
/* reset i/o manipulators */
out << STD_NAMESPACE dec << STD_NAMESPACE setfill(' ');
}
}
}
/* XML end tag for "item" */
out << "</pixel-item>" << OFendl;
/* always report success */
return EC_Normal;
}
OFCondition DcmPixelItem::writeSignatureFormat(
DcmOutputStream &outStream,
const E_TransferSyntax oxfer,
const E_EncodingType enctype,
DcmWriteCache *wcache)
{
if (dcmEnableOldSignatureFormat.get())
{
/* Old signature format as created by DCMTK releases previous to 3.5.4.
* This is non-conformant because it includes the item length in pixel items.
*/
return DcmOtherByteOtherWord::writeSignatureFormat(outStream, oxfer, enctype, wcache);
}
else
{
DcmWriteCache wcache2;
/* In case the transfer state is not initialized, this is an illegal call */
if (getTransferState() == ERW_notInitialized)
errorFlag = EC_IllegalCall;
else
{
/* if this is not an illegal call, we need to do something. First */
/* of all, check the error state of the stream that was passed */
/* only do something if the error state of the stream is ok */
errorFlag = outStream.status();
if (errorFlag.good())
{
/* create an object that represents the transfer syntax */
DcmXfer outXfer(oxfer);
/* pointer to element value if value resides in memory or old-style
* write behaviour is active (i.e. everything loaded into memory upon write
*/
Uint8 *value = NULL;
OFBool accessPossible = OFFalse;
/* check that we actually do have access to the element's value.
* If the element is unaccessable (which would mean that the value resides
* in file and access to the file fails), write an empty element with
* zero length.
*/
if (getLengthField() > 0)
{
if (valueLoaded())
{
/* get this element's value. Mind the byte ordering (little */
/* or big endian) of the transfer syntax which shall be used */
value = OFstatic_cast(Uint8 *, getValue(outXfer.getByteOrder()));
if (value) accessPossible = OFTrue;
}
else
{
/* Use local cache object if needed. This may cause those bytes
* that are read but not written because the output stream stalls to
* be read again, and the file from being re-opened next time.
* Therefore, this case should be avoided.
*/
if (!wcache) wcache = &wcache2;
/* initialize cache object. This is safe even if the object was already initialized */
wcache->init(this, getLengthField(), getTransferredBytes(), outXfer.getByteOrder());
/* access first block of element content */
errorFlag = wcache->fillBuffer(*this);
/* check that everything worked and the buffer is non-empty now */
accessPossible = errorFlag.good() && (! wcache->bufferIsEmpty());
}
}
/* if this element's transfer state is ERW_init (i.e. it has not yet been written to */
/* the stream) and if the outstream provides enough space for tag and length information */
/* write tag and length information to it, do something */
if (getTransferState() == ERW_init)
{
/* first compare with DCM_TagInfoLength (12). If there is not enough space
* in the buffer, check if the buffer is still sufficient for the requirements
* of this element, which may need only 8 instead of 12 bytes.
*/
if (outStream.avail() >= 4)
{
/* if there is no value, Length (member variable) shall be set to 0 */
if (! accessPossible) setLengthField(0);
/* write tag and length information (and possibly also data type information) to the stream, */
/* mind the transfer syntax and remember the amount of bytes that have been written */
errorFlag = writeTag(outStream, getTag(), oxfer);
/* if the writing was successful, set this element's transfer */
/* state to ERW_inWork and the amount of transferred bytes to 0 */
if (errorFlag.good())
{
setTransferState(ERW_inWork);
setTransferredBytes(0);
}
} else
errorFlag = EC_StreamNotifyClient;
}
/* if there is a value that has to be written to the stream */
/* and if this element's transfer state is ERW_inWork */
if (accessPossible && getTransferState() == ERW_inWork)
{
Uint32 len = 0;
if (valueLoaded())
{
/* write as many bytes as possible to the stream starting at value[getTransferredBytes()] */
/* (note that the bytes value[0] to value[getTransferredBytes()-1] have already been */
/* written to the stream) */
len = OFstatic_cast(Uint32, outStream.write(&value[getTransferredBytes()], getLengthField() - getTransferredBytes()));
/* increase the amount of bytes which have been transfered correspondingly */
incTransferredBytes(len);
/* see if there is something fishy with the stream */
errorFlag = outStream.status();
}
else
{
Uint32 buflen = 0;
OFBool done = getTransferredBytes() == getLengthField();
while (! done)
{
// re-fill buffer from file if empty
errorFlag = wcache->fillBuffer(*this);
buflen = wcache->contentLength();
if (errorFlag.good())
{
// write as many bytes from cache buffer to stream as possible
len = wcache->writeBuffer(outStream);
/* increase the amount of bytes which have been transfered correspondingly */
incTransferredBytes(len);
/* see if there is something fishy with the stream */
errorFlag = outStream.status();
}
// stop writing if something went wrong, we were unable to send all of the buffer content
// (which indicates that the output stream needs to be flushed, or everything was sent out.
done = errorFlag.bad() || (len < buflen) || (getTransferredBytes() == getLengthField());
}
}
/* if the amount of transferred bytes equals the length of the element's value, the */
/* entire value has been written to the stream. Thus, this element's transfer state */
/* has to be set to ERW_ready. If this is not the case but the error flag still shows */
/* an ok value, there was no more space in the stream and a corresponding return value */
/* has to be set. (Isn't the "else if" part superfluous?!?) */
if (getLengthField() == getTransferredBytes()) setTransferState(ERW_ready);
else if (errorFlag.good()) errorFlag = EC_StreamNotifyClient;
}
}
}
}
/* return result value */
return errorFlag;
}
/*
** CVS/RCS Log:
** $Log: dcpxitem.cc,v $
** Revision 1.43 2010-10-20 16:44:16 joergr
** Use type cast macros (e.g. OFstatic_cast) where appropriate.
**
** Revision 1.42 2010-10-14 13:14:08 joergr
** Updated copyright header. Added reference to COPYRIGHT file.
**
** Revision 1.41 2010-05-27 16:54:27 joergr
** Added debug message with details on created basic offset table (if any).
**
** Revision 1.40 2009-11-13 13:11:21 joergr
** Fixed minor issues in log output.
**
** Revision 1.39 2009-11-04 09:58:10 uli
** Switched to logging mechanism provided by the "new" oflog module
**
** Revision 1.38 2009-09-15 15:02:43 joergr
** Enhanced implementation of writeXML() by writing hex numbers directly to the
** output stream instead of creating a temporary string first.
**
** Revision 1.37 2009-05-04 14:29:02 meichel
** Fixed bug in DcmPixelItem::writeSignatureFormat() that caused pixel data
** to be removed from the dataset when a digital signature was generated
** for a compressed image.
**
** Revision 1.36 2009-02-04 17:57:19 joergr
** Fixes various type mismatches reported by MSVC introduced with OFFile class.
**
** Revision 1.35 2009-02-04 10:18:57 joergr
** Fixed issue with compressed frames of odd length (possibly wrong values in
** basic offset table).
**
** Revision 1.34 2008-07-17 10:31:32 onken
** Implemented copyFrom() method for complete DcmObject class hierarchy, which
** permits setting an instance's value from an existing object. Implemented
** assignment operator where necessary.
**
** Revision 1.33 2007-11-29 14:30:21 meichel
** Write methods now handle large raw data elements (such as pixel data)
** without loading everything into memory. This allows very large images to
** be sent over a network connection, or to be copied without ever being
** fully in memory.
**
** Revision 1.32 2007/06/29 14:17:49 meichel
** Code clean-up: Most member variables in module dcmdata are now private,
** not protected anymore.
**
** Revision 1.31 2007/06/26 16:24:23 joergr
** Added new variant of encodeBase64() method that outputs directly to a stream
** (avoids using a memory buffer for large binary data).
**
** Revision 1.30 2006/08/15 15:49:54 meichel
** Updated all code in module dcmdata to correctly compile when
** all standard C++ classes remain in namespace std.
**
** Revision 1.29 2005/12/08 15:41:27 meichel
** Changed include path schema for all DCMTK header files
**
** Revision 1.28 2005/11/24 12:50:59 meichel
** Fixed bug in code that prepares a byte stream that is fed into the MAC
** algorithm when creating or verifying a digital signature. The previous
** implementation was non-conformant when signatures included compressed
** (encapsulated) pixel data because the item length was included in the byte
** stream, while it should not. The global variable dcmEnableOldSignatureFormat
** and a corresponding command line option in dcmsign allow to re-enable the old
** implementation.
**
** Revision 1.27 2004/02/04 16:42:42 joergr
** Adapted type casts to new-style typecast operators defined in ofcast.h.
** Removed acknowledgements with e-mail addresses from CVS log.
**
** Revision 1.26 2003/06/12 18:21:46 joergr
** Modified code to use const_iterators where appropriate (required for STL).
**
** Revision 1.25 2002/12/06 13:16:59 joergr
** Enhanced "print()" function by re-working the implementation and replacing
** the boolean "showFullData" parameter by a more general integer flag.
** Made source code formatting more consistent with other modules/files.
**
** Revision 1.24 2002/11/27 12:06:51 meichel
** Adapted module dcmdata to use of new header file ofstdinc.h
**
** Revision 1.23 2002/08/27 16:55:55 meichel
** Initial release of new DICOM I/O stream classes that add support for stream
** compression (deflated little endian explicit VR transfer syntax)
**
** Revision 1.22 2002/05/24 14:51:51 meichel
** Moved helper methods that are useful for different compression techniques
** from module dcmjpeg to module dcmdata
**
** Revision 1.21 2002/05/14 08:21:52 joergr
** Added support for Base64 (MIME) encoded binary data.
**
** Revision 1.20 2002/04/25 10:25:49 joergr
** Added support for XML output of DICOM objects.
**
** Revision 1.19 2002/04/16 13:43:20 joergr
** Added configurable support for C++ ANSI standard includes (e.g. streams).
**
** Revision 1.18 2001/11/16 15:55:04 meichel
** Adapted digital signature code to final text of supplement 41.
**
** Revision 1.17 2001/09/25 17:19:53 meichel
** Adapted dcmdata to class OFCondition
**
** Revision 1.16 2001/06/01 15:49:08 meichel
** Updated copyright header
**
** Revision 1.15 2000/04/14 15:55:06 meichel
** Dcmdata library code now consistently uses ofConsole for error output.
**
** Revision 1.14 2000/03/08 16:26:40 meichel
** Updated copyright header.
**
** Revision 1.13 2000/03/03 14:05:35 meichel
** Implemented library support for redirecting error messages into memory
** instead of printing them to stdout/stderr for GUI applications.
**
** Revision 1.12 2000/02/23 15:12:00 meichel
** Corrected macro for Borland C++ Builder 4 workaround.
**
** Revision 1.11 2000/02/10 10:52:22 joergr
** Added new feature to dcmdump (enhanced print method of dcmdata): write
** pixel data/item value fields to raw files.
**
** Revision 1.10 2000/02/03 16:31:26 joergr
** Fixed bug: encapsulated data (pixel items) have never been loaded using
** method 'loadAllDataIntoMemory'. Therefore, encapsulated pixel data was
** never printed with 'dcmdump'.
** Corrected bug that caused wrong calculation of group length for sequence
** of items (e.g. encapsulated pixel data).
**
** Revision 1.9 2000/02/01 10:12:09 meichel
** Avoiding to include <stdlib.h> as extern "C" on Borland C++ Builder 4,
** workaround for bug in compiler header files.
**
** Revision 1.8 1999/03/31 09:25:37 meichel
** Updated copyright header in module dcmdata
**
** Revision 1.7 1998/11/12 16:48:19 meichel
** Implemented operator= for all classes derived from DcmObject.
**
** Revision 1.6 1997/07/07 07:52:29 andreas
** - Enhanced (faster) byte swapping routine. swapIfNecessary moved from
** a method in DcmObject to a general function.
**
** Revision 1.5 1997/07/03 15:10:03 andreas
** - removed debugging functions Bdebug() and Edebug() since
** they write a static array and are not very useful at all.
** Cdebug and Vdebug are merged since they have the same semantics.
** The debugging functions in dcmdata changed their interfaces
** (see dcmdata/include/dcdebug.h)
**
** Revision 1.4 1997/05/22 16:57:16 andreas
** - Corrected errors for writing of pixel sequences for encapsulated
** transfer syntaxes.
**
** Revision 1.3 1996/01/05 13:27:41 andreas
** - changed to support new streaming facilities
** - unique read/write methods for file and block transfer
** - more cleanups
**
*/
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