1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618
|
/*
*
* Copyright (C) 2002-2022, OFFIS e.V.
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation were developed by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmdata
*
* Author: Joerg Riesmeier
*
* Purpose: Convert the contents of a DICOM file to XML format
*
*/
#include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */
#include "dcmtk/dcmdata/dctk.h"
#include "dcmtk/dcmdata/cmdlnarg.h"
#include "dcmtk/ofstd/ofstd.h"
#include "dcmtk/ofstd/ofstream.h"
#include "dcmtk/ofstd/ofconapp.h"
#ifdef WITH_ZLIB
#include <zlib.h> /* for zlibVersion() */
#endif
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
#include "dcmtk/ofstd/ofchrenc.h" /* for OFCharacterEncoding */
#endif
#define OFFIS_CONSOLE_APPLICATION "dcm2xml"
#define OFFIS_CONSOLE_DESCRIPTION "Convert DICOM file and data set to XML"
#define DOCUMENT_TYPE_DEFINITION_FILE "dcm2xml.dtd"
static OFLogger dcm2xmlLogger = OFLog::getLogger("dcmtk.apps." OFFIS_CONSOLE_APPLICATION);
static char rcsid[] = "$dcmtk: " OFFIS_CONSOLE_APPLICATION " v"
OFFIS_DCMTK_VERSION " " OFFIS_DCMTK_RELEASEDATE " $";
// ********************************************
static OFCondition checkCharacterSet(const char *ifname,
DcmFileFormat &dfile,
const char *defaultCharset,
OFString &encString,
size_t &writeFlags,
const OFBool checkAllStrings)
{
OFCondition result = EC_IllegalParameter;
if (ifname != NULL)
{
DcmDataset *dset = dfile.getDataset();
/* determine character set encoding of the dataset */
OFString csetString;
if (dset->findAndGetOFStringArray(DCM_SpecificCharacterSet, csetString).good())
{
if (csetString == "ISO_IR 6") // should never be present in a dataset, but ...
encString = "UTF-8";
else if (csetString == "ISO_IR 192")
encString = "UTF-8";
else if (csetString == "ISO_IR 100")
encString = "ISO-8859-1";
else if (csetString == "ISO_IR 101")
encString = "ISO-8859-2";
else if (csetString == "ISO_IR 109")
encString = "ISO-8859-3";
else if (csetString == "ISO_IR 110")
encString = "ISO-8859-4";
else if (csetString == "ISO_IR 144")
encString = "ISO-8859-5";
else if (csetString == "ISO_IR 127")
encString = "ISO-8859-6";
else if (csetString == "ISO_IR 126")
encString = "ISO-8859-7";
else if (csetString == "ISO_IR 138")
encString = "ISO-8859-8";
else if (csetString == "ISO_IR 148")
encString = "ISO-8859-9";
else if (csetString == "ISO_IR 203")
encString = "ISO-8859-15";
else {
if (!csetString.empty())
{
OFLOG_WARN(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": SpecificCharacterSet (0008,0005) "
<< "value '" << csetString << "' not supported ... quoting non-ASCII characters");
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
OFLOG_DEBUG(dcm2xmlLogger, "using option --convert-to-utf8 to convert the DICOM file to "
"UTF-8 encoding might also help to solve this problem more appropriately");
#endif
}
/* make sure that non-ASCII characters are quoted appropriately */
writeFlags |= DCMTypes::XF_convertNonASCII;
}
/* no error */
result = EC_Normal;
} else {
/* SpecificCharacterSet is not present in the dataset */
if (dset->containsExtendedCharacters(checkAllStrings))
{
if (defaultCharset == NULL)
{
/* the dataset contains non-ASCII characters that really should not be there */
OFLOG_ERROR(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": SpecificCharacterSet (0008,0005) "
<< "element absent (on the main data set level) but extended characters used in file: " << ifname);
OFLOG_DEBUG(dcm2xmlLogger, "use option --charset-assume to manually specify an appropriate character set");
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotSelectCharacterSet, OF_error, "Missing Specific Character Set");;
} else {
result = EC_Normal;
csetString = defaultCharset;
/* first, map "old" character set names to DICOM defined terms */
if (csetString == "latin-1")
csetString = "ISO_IR 100";
else if (csetString == "latin-2")
csetString = "ISO_IR 101";
else if (csetString == "latin-3")
csetString = "ISO_IR 109";
else if (csetString == "latin-4")
csetString = "ISO_IR 110";
else if (csetString == "latin-5")
csetString = "ISO_IR 148";
else if (csetString == "cyrillic")
csetString = "ISO_IR 144";
else if (csetString == "arabic")
csetString = "ISO_IR 127";
else if (csetString == "greek")
csetString = "ISO_IR 126";
else if (csetString == "hebrew")
csetString = "ISO_IR 138";
else if (csetString == "latin-9")
csetString = "ISO_IR 203";
/* then map the DICOM defined term to XML character encoding */
if (csetString == "ISO_IR 192")
encString = "UTF-8";
else if (csetString == "ISO_IR 100")
encString = "ISO-8859-1";
else if (csetString == "ISO_IR 101")
encString = "ISO-8859-2";
else if (csetString == "ISO_IR 109")
encString = "ISO-8859-3";
else if (csetString == "ISO_IR 110")
encString = "ISO-8859-4";
else if (csetString == "ISO_IR 144")
encString = "ISO-8859-5";
else if (csetString == "ISO_IR 127")
encString = "ISO-8859-6";
else if (csetString == "ISO_IR 126")
encString = "ISO-8859-7";
else if (csetString == "ISO_IR 138")
encString = "ISO-8859-8";
else if (csetString == "ISO_IR 148")
encString = "ISO-8859-9";
else if (csetString == "ISO_IR 203")
encString = "ISO-8859-15";
else {
OFLOG_FATAL(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": Character set '"
<< defaultCharset << "' specified with option --charset-assume not supported");
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotSelectCharacterSet, OF_error, "Cannot select character set");
}
if (result.good())
{
OFString sopClass;
/* check whether this file is a DICOMDIR */
if (dfile.getMetaInfo()->findAndGetOFString(DCM_MediaStorageSOPClassUID, sopClass).bad() ||
(sopClass != UID_MediaStorageDirectoryStorage))
{
OFLOG_INFO(dcm2xmlLogger, "inserting SpecificCharacterSet (0008,0005) element with value '" << csetString << "'");
/* insert the SpecificCharacterSet (0008,0005) element with new value */
result = dset->putAndInsertOFStringArray(DCM_SpecificCharacterSet, csetString);
}
}
}
} else {
if (defaultCharset != NULL)
{
/* use "debug" instead of "warn" in order to avoid too much output in default mode */
OFLOG_DEBUG(dcm2xmlLogger, "ignoring character set '" << defaultCharset
<< "' specified with option --charset-assume since it is not needed for this data set");
}
/* by default, we use UTF-8 encoding */
encString = "UTF-8";
/* no error */
result = EC_Normal;
}
}
}
return result;
}
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
static OFCondition convertCharacterSet(const char *ifname,
DcmFileFormat &dfile,
OFString &encString,
const OFBool convertToUTF8)
{
OFCondition result = EC_IllegalParameter;
if (ifname != NULL)
{
DcmDataset *dset = dfile.getDataset();
/* convert all DICOM strings to UTF-8 (if requested) */
if (convertToUTF8)
{
OFLOG_INFO(dcm2xmlLogger, "converting all element values that are affected by SpecificCharacterSet (0008,0005) to UTF-8");
/* expect that SpecificCharacterSet contains the correct value (defined term) */
result = dset->convertToUTF8();
if (result.good())
{
/* if conversion was successful, set XML character encoding accordingly */
encString = "UTF-8";
} else
OFLOG_FATAL(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": error (" << result.text() << ") converting file to UTF-8: " << ifname);
} else {
OFString sopClass;
/* check whether the file is a DICOMDIR ... */
if (dfile.getMetaInfo()->findAndGetOFString(DCM_MediaStorageSOPClassUID, sopClass).good() &&
(sopClass == UID_MediaStorageDirectoryStorage))
{
/* ... with one or more SpecificCharacterSet elements */
if (dset->tagExistsWithValue(DCM_SpecificCharacterSet, OFTrue /*searchIntoSub*/))
{
OFLOG_WARN(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": this is a DICOMDIR file, which can contain more than one "
<< "SpecificCharacterSet (0008,0005) element ... using option --convert-to-utf8 is strongly recommended");
}
}
/* no error */
result = EC_Normal;
}
}
return result;
}
#endif
static OFCondition writeFile(STD_NAMESPACE ostream &out,
const char *ifname,
DcmFileFormat &dfile,
const E_FileReadMode readMode,
const OFBool loadIntoMemory,
const OFString &dtdFilename,
const OFString &encString,
const size_t writeFlags)
{
OFCondition result = EC_IllegalParameter;
if (ifname != NULL)
{
DcmDataset *dset = dfile.getDataset();
if (loadIntoMemory)
dset->loadAllDataIntoMemory();
/* write XML document header */
out << "<?xml version=\"1.0\"";
/* optional character set */
if (!encString.empty())
out << " encoding=\"" << encString << "\"";
out << "?>" << OFendl;
/* add document type definition (DTD) */
if (writeFlags & DCMTypes::XF_addDocumentType)
{
out << "<!DOCTYPE ";
if (readMode == ERM_dataset)
out << "data-set";
else
out << "file-format";
/* embed DTD */
if (writeFlags & DCMTypes::XF_embedDocumentType)
{
out << " [" << OFendl;
/* copy content from DTD file */
STD_NAMESPACE ifstream dtdFile(dtdFilename.c_str(), OFopenmode_in_nocreate);
if (dtdFile)
{
char c;
/* copy all characters */
while (dtdFile.get(c))
out << c;
} else {
OFLOG_WARN(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": cannot open DTD file: " << dtdFilename);
}
out << "]";
} else { /* reference DTD */
out << " SYSTEM \"" << DOCUMENT_TYPE_DEFINITION_FILE << "\"";
}
out << ">" << OFendl;
}
/* write XML document content */
if (readMode == ERM_dataset)
result = dset->writeXML(out, writeFlags);
else
result = dfile.writeXML(out, writeFlags);
}
return result;
}
#define SHORTCOL 4
#define LONGCOL 20
int main(int argc, char *argv[])
{
size_t opt_writeFlags = 0;
OFBool opt_loadIntoMemory = OFFalse;
OFBool opt_checkAllStrings = OFFalse;
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
OFBool opt_convertToUTF8 = OFFalse;
#endif
const char *opt_defaultCharset = NULL;
E_FileReadMode opt_readMode = ERM_autoDetect;
E_TransferSyntax opt_ixfer = EXS_Unknown;
OFCmdUnsignedInt opt_maxReadLength = 4096; // default is 4 KB
OFString opt_dtdFilename = OFStandard::getDefaultSupportDataDir();
opt_dtdFilename += DOCUMENT_TYPE_DEFINITION_FILE;
OFString optStr;
OFConsoleApplication app(OFFIS_CONSOLE_APPLICATION, OFFIS_CONSOLE_DESCRIPTION, rcsid);
OFCommandLine cmd;
cmd.setOptionColumns(LONGCOL, SHORTCOL);
cmd.setParamColumn(LONGCOL + SHORTCOL + 4);
cmd.addParam("dcmfile-in", "DICOM input filename to be converted\n(\"-\" for stdin)", OFCmdParam::PM_Mandatory);
cmd.addParam("xmlfile-out", "XML output filename (default: stdout)", OFCmdParam::PM_Optional);
cmd.addGroup("general options:", LONGCOL, SHORTCOL + 2);
cmd.addOption("--help", "-h", "print this help text and exit", OFCommandLine::AF_Exclusive);
cmd.addOption("--version", "print version information and exit", OFCommandLine::AF_Exclusive);
OFLog::addOptions(cmd);
cmd.addGroup("input options:");
cmd.addSubGroup("input file format:");
cmd.addOption("--read-file", "+f", "read file format or data set (default)");
cmd.addOption("--read-file-only", "+fo", "read file format only");
cmd.addOption("--read-dataset", "-f", "read data set without file meta information");
cmd.addSubGroup("input transfer syntax:");
cmd.addOption("--read-xfer-auto", "-t=", "use TS recognition (default)");
cmd.addOption("--read-xfer-detect", "-td", "ignore TS specified in the file meta header");
cmd.addOption("--read-xfer-little", "-te", "read with explicit VR little endian TS");
cmd.addOption("--read-xfer-big", "-tb", "read with explicit VR big endian TS");
cmd.addOption("--read-xfer-implicit", "-ti", "read with implicit VR little endian TS");
cmd.addSubGroup("long tag values:");
cmd.addOption("--load-all", "+M", "load very long tag values (e.g. pixel data)");
cmd.addOption("--load-short", "-M", "do not load very long values (default)");
cmd.addOption("--max-read-length", "+R", 1, "[k]bytes: integer (4..4194302, default: 4)",
"set threshold for long values to k kbytes");
cmd.addGroup("processing options:");
cmd.addSubGroup("specific character set:");
cmd.addOption("--charset-require", "+Cr", "require declaration of extended charset (def.)");
cmd.addOption("--charset-assume", "+Ca", 1, "[c]harset: string",
"assume charset c if no extended charset declared");
cmd.addOption("--charset-check-all", "+Cc", "check all data elements with string values\n(default: only PN, LO, LT, SH, ST, UC and UT)");
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
cmd.addOption("--convert-to-utf8", "+U8", "convert all element values that are affected\nby Specific Character Set (0008,0005) to UTF-8");
#endif
cmd.addGroup("output options:");
cmd.addSubGroup("general XML format:");
cmd.addOption("--dcmtk-format", "-dtk", "output in DCMTK-specific format (default)");
cmd.addOption("--native-format", "-nat", "output in Native DICOM Model format (part 19)");
cmd.addOption("--use-xml-namespace", "+Xn", "add XML namespace declaration to root element");
cmd.addSubGroup("DCMTK-specific format (not with --native-format):");
cmd.addOption("--add-dtd-reference", "+Xd", "add reference to document type definition (DTD)");
cmd.addOption("--embed-dtd-content", "+Xe", "embed document type definition into XML document");
optStr = "use specified DTD file (only with +Xe)\n(default: ";
optStr += opt_dtdFilename;
optStr += ")";
cmd.addOption("--use-dtd-file", "+Xf", 1, "[f]ilename: string",
optStr.c_str());
cmd.addOption("--write-element-name", "+Wn", "write name of the DICOM data elements (default)");
cmd.addOption("--no-element-name", "-Wn", "do not write name of the DICOM data elements");
cmd.addOption("--write-binary-data", "+Wb", "write binary data of OB and OW elements\n(default: off, be careful with --load-all)");
cmd.addSubGroup("encoding of binary data:");
cmd.addOption("--encode-hex", "+Eh", "encode binary data as hex numbers\n(default for DCMTK-specific format)");
cmd.addOption("--encode-uuid", "+Eu", "encode binary data as a UUID reference\n(default for Native DICOM Model)");
cmd.addOption("--encode-base64", "+Eb", "encode binary data as Base64 (RFC 2045, MIME)");
/* evaluate command line */
prepareCmdLineArgs(argc, argv, OFFIS_CONSOLE_APPLICATION);
if (app.parseCommandLine(cmd, argc, argv))
{
/* check exclusive options first */
if (cmd.hasExclusiveOption())
{
if (cmd.findOption("--version"))
{
app.printHeader(OFTrue /*print host identifier*/);
COUT << OFendl << "External libraries used:";
#if !defined(WITH_ZLIB) && !defined(DCMTK_ENABLE_CHARSET_CONVERSION)
COUT << " none" << OFendl;
#else
COUT << OFendl;
#endif
#ifdef WITH_ZLIB
COUT << "- ZLIB, Version " << zlibVersion() << OFendl;
#endif
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
COUT << "- " << OFCharacterEncoding::getLibraryVersionString() << OFendl;
#endif
return 0;
}
}
/* general options */
OFLog::configureFromCommandLine(cmd, app);
/* input options */
cmd.beginOptionBlock();
if (cmd.findOption("--read-file")) opt_readMode = ERM_autoDetect;
if (cmd.findOption("--read-file-only")) opt_readMode = ERM_fileOnly;
if (cmd.findOption("--read-dataset")) opt_readMode = ERM_dataset;
cmd.endOptionBlock();
cmd.beginOptionBlock();
if (cmd.findOption("--read-xfer-auto"))
opt_ixfer = EXS_Unknown;
if (cmd.findOption("--read-xfer-detect"))
dcmAutoDetectDatasetXfer.set(OFTrue);
if (cmd.findOption("--read-xfer-little"))
{
app.checkDependence("--read-xfer-little", "--read-dataset", opt_readMode == ERM_dataset);
opt_ixfer = EXS_LittleEndianExplicit;
}
if (cmd.findOption("--read-xfer-big"))
{
app.checkDependence("--read-xfer-big", "--read-dataset", opt_readMode == ERM_dataset);
opt_ixfer = EXS_BigEndianExplicit;
}
if (cmd.findOption("--read-xfer-implicit"))
{
app.checkDependence("--read-xfer-implicit", "--read-dataset", opt_readMode == ERM_dataset);
opt_ixfer = EXS_LittleEndianImplicit;
}
cmd.endOptionBlock();
if (cmd.findOption("--max-read-length"))
{
app.checkValue(cmd.getValueAndCheckMinMax(opt_maxReadLength, 4, 4194302));
opt_maxReadLength *= 1024; // convert kbytes to bytes
}
cmd.beginOptionBlock();
if (cmd.findOption("--load-all"))
opt_loadIntoMemory = OFTrue;
if (cmd.findOption("--load-short"))
opt_loadIntoMemory = OFFalse;
cmd.endOptionBlock();
/* processing options */
cmd.beginOptionBlock();
if (cmd.findOption("--charset-require"))
opt_defaultCharset = NULL;
if (cmd.findOption("--charset-assume"))
app.checkValue(cmd.getValue(opt_defaultCharset));
cmd.endOptionBlock();
if (cmd.findOption("--charset-check-all"))
opt_checkAllStrings = OFTrue;
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
if (cmd.findOption("--convert-to-utf8"))
opt_convertToUTF8 = OFTrue;
#endif
/* output options */
cmd.beginOptionBlock();
if (cmd.findOption("--native-format"))
opt_writeFlags |= DCMTypes::XF_useNativeModel;
if (cmd.findOption("--dcmtk-format"))
opt_writeFlags &= ~DCMTypes::XF_useNativeModel;
cmd.endOptionBlock();
if (cmd.findOption("--use-xml-namespace"))
opt_writeFlags |= DCMTypes::XF_useXMLNamespace;
cmd.beginOptionBlock();
if (cmd.findOption("--add-dtd-reference"))
{
app.checkConflict("--add-dtd-reference", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
opt_writeFlags |= DCMTypes::XF_addDocumentType;
}
if (cmd.findOption("--embed-dtd-content"))
{
app.checkConflict("--embed-dtd-content", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
opt_writeFlags |= DCMTypes::XF_addDocumentType | DCMTypes::XF_embedDocumentType;
}
cmd.endOptionBlock();
if (cmd.findOption("--use-dtd-file"))
{
app.checkConflict("--use-dtd-file", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
app.checkDependence("--use-dtd-file", "--embed-dtd-content", (opt_writeFlags & DCMTypes::XF_embedDocumentType) > 0);
app.checkValue(cmd.getValue(opt_dtdFilename));
}
cmd.beginOptionBlock();
if (cmd.findOption("--write-element-name"))
{
app.checkConflict("--write-element-name", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
opt_writeFlags &= ~DCMTypes::XF_omitDataElementName;
}
if (cmd.findOption("--no-element-name"))
{
app.checkConflict("--no-element-name", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
opt_writeFlags |= DCMTypes::XF_omitDataElementName;
}
cmd.endOptionBlock();
if (cmd.findOption("--write-binary-data"))
{
app.checkConflict("--write-binary-data", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
opt_writeFlags |= DCMTypes::XF_writeBinaryData;
}
cmd.beginOptionBlock();
if (cmd.findOption("--encode-hex"))
{
app.checkConflict("--encode-hex", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
app.checkDependence("--encode-hex", "--write-binary-data", (opt_writeFlags & DCMTypes::XF_writeBinaryData) > 0);
opt_writeFlags &= ~DCMTypes::XF_encodeBase64;
}
if (cmd.findOption("--encode-uuid"))
{
app.checkDependence("--encode-uuid", "--native-format", (opt_writeFlags & DCMTypes::XF_useNativeModel) > 0);
opt_writeFlags &= ~DCMTypes::XF_encodeBase64;
}
if (cmd.findOption("--encode-base64"))
{
if (!(opt_writeFlags & DCMTypes::XF_useNativeModel))
app.checkDependence("--encode-base64", "--write-binary-data", (opt_writeFlags & DCMTypes::XF_writeBinaryData) > 0);
opt_writeFlags |= DCMTypes::XF_encodeBase64;
}
cmd.endOptionBlock();
}
/* print resource identifier */
OFLOG_DEBUG(dcm2xmlLogger, rcsid << OFendl);
/* make sure data dictionary is loaded */
if (!dcmDataDict.isDictionaryLoaded())
{
OFLOG_WARN(dcm2xmlLogger, "no data dictionary loaded, check environment variable: "
<< DCM_DICT_ENVIRONMENT_VARIABLE);
}
/* make sure document type definition file exists */
if ((opt_writeFlags & DCMTypes::XF_embedDocumentType) && !OFStandard::fileExists(opt_dtdFilename))
{
OFLOG_WARN(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": DTD file \"" << opt_dtdFilename
<< "\" does not exist ... adding reference instead");
opt_writeFlags &= ~DCMTypes::XF_embedDocumentType;
}
int result = 0;
/* first parameter is treated as the input filename */
const char *ifname = NULL;
cmd.getParam(1, ifname);
/* check input file */
if ((ifname != NULL) && (strlen(ifname) > 0))
{
/* read DICOM file or data set */
DcmFileFormat dfile;
OFCondition status = dfile.loadFile(ifname, opt_ixfer, EGL_noChange, OFstatic_cast(Uint32, opt_maxReadLength), opt_readMode);
if (status.good())
{
OFString encString;
/* check specific character set (and possibly fix it) */
if (checkCharacterSet(ifname, dfile, opt_defaultCharset, encString, opt_writeFlags, opt_checkAllStrings).good())
{
#ifdef DCMTK_ENABLE_CHARSET_CONVERSION
/* convert character set of dataset, e.g. to UTF-8 */
if (convertCharacterSet(ifname, dfile, encString, opt_convertToUTF8).bad())
result = 4;
#endif
} else
result = 7;
if (result == 0)
{
/* if second parameter is present, it is treated as the output filename,
* unless it is "-". If the name is absent or equal to "-", write to stdout. */
const char *ofname = NULL;
if (cmd.getParamCount() == 2)
cmd.getParam(2, ofname);
if (ofname && (strcmp(ofname, "-") != 0))
{
STD_NAMESPACE ofstream stream(ofname);
if (stream.good())
{
/* write content in XML format to file */
status = writeFile(stream, ifname, dfile, opt_readMode, opt_loadIntoMemory, opt_dtdFilename, encString, opt_writeFlags);
if (status.bad())
{
OFLOG_FATAL(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": error (" << status.text() << ") writing file: "<< ofname);
result = 2;
}
} else
result = 1;
} else {
/* write content in XML format to standard output */
status = writeFile(COUT, ifname, dfile, opt_readMode, opt_loadIntoMemory, opt_dtdFilename, encString, opt_writeFlags);
if (status.bad())
{
OFLOG_FATAL(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": error (" << status.text() << ") writing to standard output");
result = 3;
}
}
}
} else {
OFLOG_FATAL(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": error (" << status.text() << ") reading file: "<< ifname);
result = 5;
}
} else {
OFLOG_FATAL(dcm2xmlLogger, OFFIS_CONSOLE_APPLICATION << ": invalid filename: <empty string>");
result = 6;
}
return result;
}
|