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/*
*
* Copyright (C) 1997-2023, OFFIS e.V.
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation were developed by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmdata
*
* Author: Andreas Barth
*
* Purpose: abstract class DcmCodec and the class DcmCodecStruct
*
*/
#include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */
#include "dcmtk/dcmdata/dccodec.h"
#include "dcmtk/ofstd/oflist.h"
#include "dcmtk/ofstd/ofthread.h"
#include "dcmtk/dcmdata/dcdeftag.h" /* for tag constants */
#include "dcmtk/dcmdata/dcuid.h" /* for dcmGenerateUniqueIdentifer()*/
#include "dcmtk/dcmdata/dcitem.h" /* for class DcmItem */
#include "dcmtk/dcmdata/dcsequen.h" /* for DcmSequenceOfItems */
#include "dcmtk/dcmdata/dcpixseq.h" /* for DcmPixelSequence */
#include "dcmtk/dcmdata/dcpxitem.h" /* for DcmPixelItem */
#include "dcmtk/dcmdata/dcswap.h" /* for swapIfNecessary */
#include "dcmtk/dcmdata/dcvrcs.h" /* for DcmCodeString */
#include "dcmtk/dcmdata/dcvrui.h" /* for DcmUniqueIdentifier */
// static member variables
OFList<DcmCodecList *> DcmCodecList::registeredCodecs;
#ifdef WITH_THREADS
OFReadWriteLock DcmCodecList::codecLock;
#endif
/* --------------------------------------------------------------- */
// DcmCodec static helper methods
OFCondition DcmCodec::insertStringIfMissing(DcmItem *dataset, const DcmTagKey& tag, const char *val)
{
DcmStack stack;
if ((dataset->search(tag, stack, ESM_fromHere, OFFalse)).bad())
{
return dataset->putAndInsertString(tag, val, OFTrue);
}
return EC_Normal;
}
OFCondition DcmCodec::convertToSecondaryCapture(DcmItem *dataset)
{
if (dataset == NULL) return EC_IllegalCall;
OFCondition result = EC_Normal;
char buf[70];
// SOP Class UID - always replace
if (result.good()) result = dataset->putAndInsertString(DCM_SOPClassUID, UID_SecondaryCaptureImageStorage);
// SOP Instance UID - only insert if missing.
dcmGenerateUniqueIdentifier(buf);
if (result.good()) result = insertStringIfMissing(dataset, DCM_SOPInstanceUID, buf);
// Type 1 attributes - insert with value if missing
dcmGenerateUniqueIdentifier(buf, SITE_STUDY_UID_ROOT);
if (result.good()) result = insertStringIfMissing(dataset, DCM_StudyInstanceUID, buf);
dcmGenerateUniqueIdentifier(buf, SITE_SERIES_UID_ROOT);
if (result.good()) result = insertStringIfMissing(dataset, DCM_SeriesInstanceUID, buf);
if (result.good()) result = insertStringIfMissing(dataset, DCM_ConversionType, "WSD");
if (result.good()) result = insertStringIfMissing(dataset, DCM_Modality, "OT");
// Type 2 attributes - insert without value if missing
if (result.good()) result = insertStringIfMissing(dataset, DCM_PatientName, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_PatientID, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_PatientBirthDate, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_PatientSex, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_PatientOrientation, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_StudyDate, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_StudyTime, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_ReferringPhysicianName, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_StudyID, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_AccessionNumber, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_SeriesNumber, NULL);
if (result.good()) result = insertStringIfMissing(dataset, DCM_InstanceNumber, NULL);
return result;
}
OFCondition DcmCodec::insertCodeSequence(
DcmItem *dataset,
const DcmTagKey &tagKey,
const char *codingSchemeDesignator,
const char *codeValue,
const char *codeMeaning)
{
if (dataset == NULL || codingSchemeDesignator == NULL ||
codeValue == NULL || codeMeaning == NULL) return EC_IllegalCall;
OFCondition result = EC_Normal;
DcmSequenceOfItems *dseq = new DcmSequenceOfItems(tagKey);
if (dseq)
{
DcmItem *ditem = new DcmItem();
if (ditem)
{
dseq->insert(ditem);
result = ditem->putAndInsertString(DCM_CodingSchemeDesignator, codingSchemeDesignator);
if (result.good()) result = ditem->putAndInsertString(DCM_CodeValue, codeValue);
if (result.good()) result = ditem->putAndInsertString(DCM_CodeMeaning, codeMeaning);
} else result = EC_MemoryExhausted;
// insert sequence into dataset if everything went well
if (result.good()) dataset->insert(dseq, OFTrue /*replaceOld*/); else delete dseq;
} else result = EC_MemoryExhausted;
return result;
}
OFCondition DcmCodec::newInstance(
DcmItem *dataset,
const char *purposeOfReferenceCodingScheme,
const char *purposeOfReferenceCodeValue,
const char *purposeOfReferenceCodeMeaning)
{
if (dataset == NULL) return EC_IllegalCall;
OFCondition result = EC_Normal;
// look up current SOP Class UID and SOP Instance UID
const char *classUID = NULL;
const char *instanceUID = NULL;
// search for existing SOP Class UID / SOP Instance UID
OFCondition tempResult = dataset->findAndGetString(DCM_SOPClassUID, classUID);
if (tempResult.good()) tempResult = dataset->findAndGetString(DCM_SOPInstanceUID, instanceUID);
if (tempResult.good() && classUID && instanceUID)
{
// create source image sequence
DcmSequenceOfItems *dseq = new DcmSequenceOfItems(DCM_SourceImageSequence);
if (dseq)
{
DcmItem *ditem = new DcmItem();
if (ditem)
{
dseq->insert(ditem);
DcmElement *elem1 = new DcmUniqueIdentifier(DCM_ReferencedSOPClassUID);
if (elem1)
{
result = elem1->putString(classUID);
ditem->insert(elem1, OFTrue /*replaceOld*/);
if (result.good())
{
DcmElement *elem2 = new DcmUniqueIdentifier(DCM_ReferencedSOPInstanceUID);
if (elem2)
{
result = elem2->putString(instanceUID);
ditem->insert(elem2, OFTrue /*replaceOld*/);
} else result = EC_MemoryExhausted;
}
} else result = EC_MemoryExhausted;
if (result.good() && purposeOfReferenceCodingScheme &&
purposeOfReferenceCodeValue && purposeOfReferenceCodeMeaning)
{
// add purpose of reference code sequence
result = DcmCodec::insertCodeSequence(ditem, DCM_PurposeOfReferenceCodeSequence,
purposeOfReferenceCodingScheme, purposeOfReferenceCodeValue, purposeOfReferenceCodeMeaning);
}
} else result = EC_MemoryExhausted;
if (result.good()) dataset->insert(dseq, OFTrue); else delete dseq;
} else result = EC_MemoryExhausted;
}
// create new SOP instance UID
if (result.good())
{
char new_uid[100];
DcmElement *elem = new DcmUniqueIdentifier(DCM_SOPInstanceUID);
if (elem)
{
if (EC_Normal == (result = elem->putString(dcmGenerateUniqueIdentifier(new_uid))))
dataset->insert(elem, OFTrue); // replace SOP Instance UID
else delete elem;
} else result = EC_MemoryExhausted;
}
return result;
}
OFCondition DcmCodec::updateImageType(DcmItem *dataset)
{
if (dataset == NULL) return EC_IllegalCall;
DcmElement *elem = NULL;
/* check for the data element (with non-empty value) */
if (dataset->findAndGetElement(DCM_ImageType, elem).good() && !elem->isEmpty())
{
/* case 1: there is a single value only */
if (elem->getNumberOfValues() == 1)
{
DCMDATA_DEBUG("DcmCodec::updateImageType() setting data element value 'DERIVED\\SECONDARY'");
/* overwrite with a valid value (VM=2-n) */
return elem->putString("DERIVED\\SECONDARY");
} else {
OFString elemValue;
/* case 2: value 1 is different from "DERIVED" */
if (elem->getOFString(elemValue, 0 /*pos*/).good() && (elemValue != "DERIVED"))
{
if (elem->ident() == EVR_CS)
{
DCMDATA_DEBUG("DcmCodec::updateImageType() setting data element value 1 to 'DERIVED'");
/* overwrite value 1 */
return OFstatic_cast(DcmCodeString *, elem)->putOFStringAtPos("DERIVED", 0);
} else {
/* cannot overwrite value with wrong VR (should never happen) */
DCMDATA_ERROR("DcmCodec: Internal ERROR: Cannot update element ImageType " << DCM_ImageType << " with wrong VR");
return EC_InvalidVR;
}
}
}
}
/* nothing to do */
return EC_Normal;
}
OFCondition DcmCodec::determineStartFragment(
Uint32 frameNo,
Sint32 numberOfFrames,
DcmPixelSequence * fromPixSeq,
Uint32& currentItem)
{
Uint32 numberOfFragments = OFstatic_cast(Uint32, fromPixSeq->card());
if (numberOfFrames < 1 || numberOfFragments <= OFstatic_cast(Uint32, numberOfFrames) || frameNo >= OFstatic_cast(Uint32, numberOfFrames))
return EC_IllegalCall;
if (frameNo == 0)
{
// simple case: first frame is always at second fragment
currentItem = 1;
return EC_Normal;
}
if (numberOfFragments == OFstatic_cast(Uint32, numberOfFrames) + 1)
{
// standard case: there is one fragment per frame.
currentItem = frameNo + 1;
return EC_Normal;
}
// non-standard case: multiple fragments per frame.
// We now try to consult the offset table.
DcmPixelItem *pixItem = NULL;
Uint8 *rawOffsetTable = NULL;
// get first pixel item, i.e. the fragment containing the offset table
OFCondition result = fromPixSeq->getItem(pixItem, 0);
if (result.good())
{
Uint32 tableLength = pixItem->getLength();
result = pixItem->getUint8Array(rawOffsetTable);
if (result.good())
{
// check if the offset table is empty
if (tableLength == 0)
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotDetermineStartFragment, OF_error, "Cannot determine start fragment: basic offset table is empty");
// check if the offset table has the right size: 4 bytes for each frame (not fragment!)
else if (tableLength != 4 * OFstatic_cast(Uint32, numberOfFrames))
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotDetermineStartFragment, OF_error, "Cannot determine start fragment: basic offset table has wrong size");
else {
// byte swap offset table into local byte order. In file, the offset table is always in little endian
swapIfNecessary(gLocalByteOrder, EBO_LittleEndian, rawOffsetTable, tableLength, sizeof(Uint32));
// cast offset table to Uint32.
Uint32 *offsetTable = OFreinterpret_cast(Uint32 *, rawOffsetTable);
// now access offset of the frame we're looking for
Uint32 offset = offsetTable[frameNo];
// OK, now let's look if we can find a fragment that actually corresponds to that offset.
// In counter we compute the offset for each frame by adding all fragment lengths
Uint32 counter = 0;
// now iterate over all fragments except the index table. The start of the first fragment
// is defined as zero.
for (Uint32 idx = 1; idx < numberOfFragments; ++idx)
{
if (counter == offset)
{
// hooray, we are lucky. We have found the fragment we're looking for
currentItem = idx;
return EC_Normal;
}
// access pixel item in order to determine its length
result = fromPixSeq->getItem(pixItem, idx);
if (result.bad())
return makeOFCondition(OFM_dcmdata, EC_CODE_CannotDetermineStartFragment, OF_error, "Cannot determine start fragment: cannot access referenced pixel item");
// add pixel item length plus 8 bytes overhead for the item tag and length field
counter += pixItem->getLength() + 8;
}
// bad luck. We have not found a fragment corresponding to the offset in the offset table.
// Either we cannot correctly add numbers, or they cannot :-)
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotDetermineStartFragment, OF_error, "Cannot determine start fragment: possibly wrong value in basic offset table");
}
} else
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotDetermineStartFragment, OF_error, "Cannot determine start fragment: cannot access content of basic offset table");
} else
result = makeOFCondition(OFM_dcmdata, EC_CODE_CannotDetermineStartFragment, OF_error, "Cannot determine start fragment: cannot access basic offset table (first item)");
return result;
}
/* --------------------------------------------------------------- */
DcmCodecList::DcmCodecList(
const DcmCodec *aCodec,
const DcmRepresentationParameter *aDefaultRepParam,
const DcmCodecParameter *aCodecParameter)
: codec(aCodec)
, defaultRepParam(aDefaultRepParam)
, codecParameter(aCodecParameter)
{
}
DcmCodecList::~DcmCodecList()
{
}
OFCondition DcmCodecList::registerCodec(
const DcmCodec *aCodec,
const DcmRepresentationParameter *aDefaultRepParam,
const DcmCodecParameter *aCodecParameter)
{
if ((aCodec == NULL)||(aCodecParameter == NULL)) return EC_IllegalParameter;
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
// acquire write lock on codec list. Will block if some codec is currently active.
OFCondition result = EC_Normal;
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.wrlock())
{
#endif
DcmCodecList *listEntry = new DcmCodecList(aCodec, aDefaultRepParam, aCodecParameter);
if (listEntry)
{
// prevent codec from being registered twice
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec == aCodec)
{
// this codec is already registered.
first = last;
result = EC_IllegalCall;
} else ++first;
}
if (result.good()) registeredCodecs.push_back(listEntry); else delete listEntry;
} else result = EC_MemoryExhausted;
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFCondition DcmCodecList::deregisterCodec(const DcmCodec *aCodec)
{
if (aCodec == NULL) return EC_IllegalParameter;
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
// acquire write lock on codec list. Will block if some codec is currently active.
OFCondition result = EC_Normal;
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.wrlock())
{
#endif
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec == aCodec)
{
delete *first;
first = registeredCodecs.erase(first);
} else ++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFCondition DcmCodecList::updateCodecParameter(
const DcmCodec *aCodec,
const DcmCodecParameter *aCodecParameter)
{
if ((aCodec == NULL)||(aCodecParameter == NULL)) return EC_IllegalParameter;
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
// acquire write lock on codec list. Will block if some codec is currently active.
OFCondition result = EC_Normal;
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.wrlock())
{
#endif
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec == aCodec) (*first)->codecParameter = aCodecParameter;
++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFCondition DcmCodecList::decode(
const DcmXfer & fromType,
const DcmRepresentationParameter * fromParam,
DcmPixelSequence * fromPixSeq,
DcmPolymorphOBOW& uncompressedPixelData,
DcmStack & pixelStack,
OFBool& removeOldRep)
{
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
OFCondition result = EC_CannotChangeRepresentation;
// acquire write lock on codec list. Will block if some write lock is currently active.
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.rdlock())
{
#endif
E_TransferSyntax fromXfer = fromType.getXfer();
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec->canChangeCoding(fromXfer, EXS_LittleEndianExplicit))
{
result = (*first)->codec->decode(fromParam, fromPixSeq, uncompressedPixelData, (*first)->codecParameter, pixelStack, removeOldRep);
first = last;
} else ++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFCondition DcmCodecList::decodeFrame(
const DcmXfer & fromType,
const DcmRepresentationParameter * fromParam,
DcmPixelSequence * fromPixSeq,
DcmItem *dataset,
Uint32 frameNo,
Uint32& startFragment,
void *buffer,
Uint32 bufSize,
OFString& decompressedColorModel)
{
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
OFCondition result = EC_CannotChangeRepresentation;
// acquire write lock on codec list. Will block if some write lock is currently active.
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.rdlock())
{
#endif
E_TransferSyntax fromXfer = fromType.getXfer();
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec->canChangeCoding(fromXfer, EXS_LittleEndianExplicit))
{
result = (*first)->codec->decodeFrame(fromParam, fromPixSeq, (*first)->codecParameter,
dataset, frameNo, startFragment, buffer, bufSize, decompressedColorModel);
first = last;
} else ++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFCondition DcmCodecList::encode(
const E_TransferSyntax fromRepType,
const DcmRepresentationParameter * fromParam,
DcmPixelSequence * fromPixSeq,
const E_TransferSyntax toRepType,
const DcmRepresentationParameter * toRepParam,
DcmPixelSequence * & toPixSeq,
DcmStack & pixelStack,
OFBool& removeOldRep)
{
toPixSeq = NULL;
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
OFCondition result = EC_CannotChangeRepresentation;
// acquire write lock on codec list. Will block if some write lock is currently active.
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.rdlock())
{
#endif
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec->canChangeCoding(fromRepType, toRepType))
{
if (!toRepParam) toRepParam = (*first)->defaultRepParam;
result = (*first)->codec->encode(fromRepType, fromParam, fromPixSeq,
toRepParam, toPixSeq, (*first)->codecParameter, pixelStack, removeOldRep);
first = last;
} else ++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFCondition DcmCodecList::encode(
const E_TransferSyntax fromRepType,
const Uint16 * pixelData,
const Uint32 length,
const E_TransferSyntax toRepType,
const DcmRepresentationParameter * toRepParam,
DcmPixelSequence * & toPixSeq,
DcmStack & pixelStack,
OFBool& removeOldRep)
{
toPixSeq = NULL;
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
OFCondition result = EC_CannotChangeRepresentation;
// acquire write lock on codec list. Will block if some write lock is currently active.
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.rdlock())
{
#endif
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec->canChangeCoding(fromRepType, toRepType))
{
if (!toRepParam) toRepParam = (*first)->defaultRepParam;
result = (*first)->codec->encode(pixelData, length, toRepParam, toPixSeq,
(*first)->codecParameter, pixelStack, removeOldRep);
first = last;
} else ++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
OFBool DcmCodecList::canChangeCoding(
const E_TransferSyntax fromRepType,
const E_TransferSyntax toRepType)
{
#ifdef WITH_THREADS
if (! codecLock.initialized()) return OFFalse; // should never happen
#endif
OFBool result = OFFalse;
// acquire write lock on codec list. Will block if some write lock is currently active.
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.rdlock())
{
#endif
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec->canChangeCoding(fromRepType, toRepType))
{
result = OFTrue;
first = last;
} else ++first;
}
#ifdef WITH_THREADS
}
#endif
return result;
}
OFCondition DcmCodecList::determineDecompressedColorModel(
const DcmXfer &fromType,
const DcmRepresentationParameter *fromParam,
DcmPixelSequence *fromPixSeq,
DcmItem *dataset,
OFString &decompressedColorModel)
{
#ifdef WITH_THREADS
if (! codecLock.initialized()) return EC_IllegalCall; // should never happen
#endif
OFCondition result = EC_CannotChangeRepresentation;
// acquire write lock on codec list. Will block if some write lock is currently active.
#ifdef WITH_THREADS
OFReadWriteLocker locker(codecLock);
if (0 == locker.rdlock())
{
#endif
E_TransferSyntax fromXfer = fromType.getXfer();
OFListIterator(DcmCodecList *) first = registeredCodecs.begin();
OFListIterator(DcmCodecList *) last = registeredCodecs.end();
while (first != last)
{
if ((*first)->codec->canChangeCoding(fromXfer, EXS_LittleEndianExplicit))
{
result = (*first)->codec->determineDecompressedColorModel(fromParam, fromPixSeq, (*first)->codecParameter,
dataset, decompressedColorModel);
first = last;
} else ++first;
}
#ifdef WITH_THREADS
} else result = EC_IllegalCall;
#endif
return result;
}
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