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/*
*
* Copyright (C) 1994-2023, OFFIS e.V.
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation were developed by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmdata
*
* Author: Gerd Ehlers, Andreas Barth
*
* Purpose: Implementation of class DcmPixelItem
*
*/
#include "dcmtk/config/osconfig.h" /* make sure OS specific configuration is included first */
#include "dcmtk/ofstd/ofstream.h"
#include "dcmtk/dcmdata/dcpxitem.h"
#include "dcmtk/dcmdata/dcswap.h"
#include "dcmtk/ofstd/ofstring.h"
#include "dcmtk/ofstd/ofstd.h"
#include "dcmtk/dcmdata/dcistrma.h" /* for class DcmInputStream */
#include "dcmtk/dcmdata/dcostrma.h" /* for class DcmOutputStream */
#include "dcmtk/dcmdata/dcwcache.h" /* for class DcmWriteCache */
// ********************************
DcmPixelItem::DcmPixelItem(const DcmTag &tag,
const Uint32 len)
: DcmOtherByteOtherWord(tag, len)
{
setTagVR(EVR_pixelItem);
}
DcmPixelItem::DcmPixelItem(const DcmPixelItem &old)
: DcmOtherByteOtherWord(old)
{
}
DcmPixelItem &DcmPixelItem::operator=(const DcmPixelItem &obj)
{
DcmOtherByteOtherWord::operator=(obj);
return *this;
}
OFCondition DcmPixelItem::copyFrom(const DcmObject &rhs)
{
if (this != &rhs)
{
if (rhs.ident() != ident()) return EC_IllegalCall;
*this = OFstatic_cast(const DcmPixelItem &, rhs);
}
return EC_Normal;
}
DcmPixelItem::~DcmPixelItem()
{
}
// ********************************
OFBool DcmPixelItem::isNested() const
{
OFBool nested = OFFalse;
if (getParent() != NULL)
{
// check for surrounding structure of a pixel sequence
if ((getParent()->ident() == EVR_pixelSQ))
nested = OFTrue;
}
return nested;
}
DcmItem *DcmPixelItem::getParentItem()
{
DcmItem *parentItem = NULL;
if (getParent() != NULL)
{
// make sure that the direct parent has the correct type
if (getParent()->ident() == EVR_pixelSQ)
{
DcmObject *parent = getParent()->getParent();
if (parent != NULL)
{
// make sure that it is really a class derived from DcmItem
switch (parent->ident())
{
case EVR_metainfo:
case EVR_dataset:
case EVR_item:
case EVR_dirRecord:
parentItem = OFreinterpret_cast(DcmItem *, parent);
break;
default:
DCMDATA_DEBUG("DcmPixelItem::getParentItem() Parent object has wrong class identifier: "
<< OFstatic_cast(int, parent->ident())
<< " (" << DcmVR(parent->ident()).getVRName() << ")");
break;
}
}
} else {
DCMDATA_DEBUG("DcmPixelItem::getParentItem() Direct parent object is not a pixel sequence");
}
}
return parentItem;
}
// ********************************
Uint32 DcmPixelItem::calcElementLength(const E_TransferSyntax xfer,
const E_EncodingType enctype)
{
/* silence unused arguments warnings */
OFstatic_cast(void, xfer);
OFstatic_cast(void, enctype);
/* get length of the pixel data */
Uint32 valueLength = getLengthField();
/* make sure the value did not overflow, clamp it otherwise. */
if (OFStandard::check32BitAddOverflow(valueLength, 8))
return OFnumeric_limits<Uint32>::max();
return valueLength + 8;
}
// ********************************
OFCondition DcmPixelItem::writeTagAndLength(DcmOutputStream &outStream,
const E_TransferSyntax oxfer,
Uint32 &writtenBytes) const
{
OFCondition l_error = outStream.status();
if (l_error.good())
{
/* write tag information */
l_error = writeTag(outStream, getTag(), oxfer);
writtenBytes = 4;
/* prepare to write the value field */
Uint32 valueLength = getLengthField();
DcmXfer outXfer(oxfer);
/* check byte-ordering */
const E_ByteOrder oByteOrder = outXfer.getByteOrder();
if (oByteOrder == EBO_unknown)
{
return EC_IllegalCall;
}
swapIfNecessary(oByteOrder, gLocalByteOrder, &valueLength, 4, 4);
// availability of four bytes space in output buffer
// has been checked by caller.
writtenBytes += OFstatic_cast(Uint32, outStream.write(&valueLength, 4));
} else
writtenBytes = 0;
return l_error;
}
void DcmPixelItem::print(STD_NAMESPACE ostream &out,
const size_t flags,
const int level,
const char *pixelFileName,
size_t *pixelCounter)
{
/* call inherited method */
printPixel(out, flags, level, pixelFileName, pixelCounter);
}
OFCondition DcmPixelItem::createOffsetTable(const DcmOffsetList &offsetList)
{
OFCondition result = EC_Normal;
size_t numEntries = offsetList.size();
if (numEntries > 0)
{
Uint32 current = 0;
Uint32 *array = new Uint32[numEntries];
if (array)
{
DCMDATA_DEBUG("DcmPixelItem: creating offset table with " << numEntries << " entries");
OFListConstIterator(Uint32) first = offsetList.begin();
OFListConstIterator(Uint32) last = offsetList.end();
unsigned long idx = 0;
OFBool overflow = OFFalse;
while ((first != last) && result.good())
{
// check for 32-bit unsigned integer overflow (during previous iteration) and report on this
if (overflow)
{
DCMDATA_WARN("DcmPixelItem: offset value exceeds maximum (32-bit unsigned integer) for frame #"
<< (idx + 1) << ", cannot create offset table");
result = EC_InvalidBasicOffsetTable;
}
// check for odd offset values, should never happen at this point (if list was filled by an encoder)
else if (current & 1)
{
DCMDATA_WARN("DcmPixelItem: odd offset value (" << current << ") for frame #"
<< (idx + 1) << ", cannot create offset table");
result = EC_InvalidBasicOffsetTable;
} else {
// value "current" is proven to be valid
array[idx++] = current;
// check for 32-bit unsigned integer overflow (but report only during next iteration)
overflow = !OFStandard::safeAdd(current, *first, current);
++first;
}
}
if (result.good())
{
result = swapIfNecessary(EBO_LittleEndian, gLocalByteOrder, array, OFstatic_cast(Uint32, numEntries * sizeof(Uint32)), sizeof(Uint32));
if (result.good())
result = putUint8Array(OFreinterpret_cast(Uint8 *, array), OFstatic_cast(unsigned long, numEntries * sizeof(Uint32)));
}
delete[] array;
} else
result = EC_MemoryExhausted;
}
return result;
}
OFCondition DcmPixelItem::writeXML(STD_NAMESPACE ostream &out,
const size_t flags)
{
if (flags & DCMTypes::XF_useNativeModel)
{
/* in Native DICOM Model, there is no concept of a "pixel item" */
return makeOFCondition(OFM_dcmdata, EC_CODE_CannotConvertToXML, OF_error,
"Cannot convert Pixel Item to Native DICOM Model");
} else {
/* XML start tag for "item" */
out << "<pixel-item";
/* value length in bytes = 0..max */
out << " len=\"" << getLengthField() << "\"";
/* value loaded = no (or absent)*/
if (!valueLoaded())
out << " loaded=\"no\"";
/* pixel item contains binary data */
if (!(flags & DCMTypes::XF_writeBinaryData))
out << " binary=\"hidden\"";
else if (flags & DCMTypes::XF_encodeBase64)
out << " binary=\"base64\"";
else
out << " binary=\"yes\"";
out << ">";
/* write element value (if loaded) */
if (valueLoaded() && (flags & DCMTypes::XF_writeBinaryData))
{
/* encode binary data as Base64 */
if (flags & DCMTypes::XF_encodeBase64)
{
/* pixel items always contain 8 bit data, therefore, byte swapping not required */
OFStandard::encodeBase64(out, OFstatic_cast(Uint8 *, getValue()), OFstatic_cast(size_t, getLengthField()));
} else {
/* get and check 8 bit data */
Uint8 *byteValues = NULL;
if (getUint8Array(byteValues).good() && (byteValues != NULL))
{
const unsigned long count = getLengthField();
out << STD_NAMESPACE hex << STD_NAMESPACE setfill('0');
/* print byte values in hex mode */
out << STD_NAMESPACE setw(2) << OFstatic_cast(int, *(byteValues++));
for (unsigned long i = 1; i < count; i++)
out << "\\" << STD_NAMESPACE setw(2) << OFstatic_cast(int, *(byteValues++));
/* reset i/o manipulators */
out << STD_NAMESPACE dec << STD_NAMESPACE setfill(' ');
}
}
}
/* XML end tag for "item" */
out << "</pixel-item>" << OFendl;
/* always report success */
return EC_Normal;
}
}
OFCondition DcmPixelItem::writeSignatureFormat(
DcmOutputStream &outStream,
const E_TransferSyntax oxfer,
const E_EncodingType enctype,
DcmWriteCache *wcache)
{
if (dcmEnableOldSignatureFormat.get())
{
/* Old signature format as created by DCMTK releases previous to 3.5.4.
* This is non-conformant because it includes the item length in pixel items.
*/
return DcmOtherByteOtherWord::writeSignatureFormat(outStream, oxfer, enctype, wcache);
}
else
{
DcmWriteCache wcache2;
/* In case the transfer state is not initialized, this is an illegal call */
if (getTransferState() == ERW_notInitialized)
errorFlag = EC_IllegalCall;
else
{
/* if this is not an illegal call, we need to do something. First */
/* of all, check the error state of the stream that was passed */
/* only do something if the error state of the stream is ok */
errorFlag = outStream.status();
if (errorFlag.good())
{
/* create an object that represents the transfer syntax */
DcmXfer outXfer(oxfer);
/* pointer to element value if value resides in memory or old-style
* write behaviour is active (i.e. everything loaded into memory upon write
*/
Uint8 *value = NULL;
OFBool accessPossible = OFFalse;
/* check that we actually do have access to the element's value.
* If the element is unaccessible (which would mean that the value resides
* in file and access to the file fails), write an empty element with
* zero length.
*/
if (getLengthField() > 0)
{
if (valueLoaded())
{
/* get this element's value. Mind the byte ordering (little */
/* or big endian) of the transfer syntax which shall be used */
value = OFstatic_cast(Uint8 *, getValue(outXfer.getByteOrder()));
if (value) accessPossible = OFTrue;
}
else
{
/* Use local cache object if needed. This may cause those bytes
* that are read but not written because the output stream stalls to
* be read again, and the file from being re-opened next time.
* Therefore, this case should be avoided.
*/
if (!wcache) wcache = &wcache2;
/* initialize cache object. This is safe even if the object was already initialized */
wcache->init(this, getLengthField(), getTransferredBytes(), outXfer.getByteOrder());
/* access first block of element content */
errorFlag = wcache->fillBuffer(*this);
/* check that everything worked and the buffer is non-empty now */
accessPossible = errorFlag.good() && (! wcache->bufferIsEmpty());
}
}
/* if this element's transfer state is ERW_init (i.e. it has not yet been written to */
/* the stream) and if the outstream provides enough space for tag and length information */
/* write tag and length information to it, do something */
if (getTransferState() == ERW_init)
{
// Force a compression filter (if any) to process the input buffer, by calling outStream.write().
// This ensures that we cannot get stuck if there are just a few bytes available in the buffer
outStream.write(NULL, 0);
/* first compare with DCM_TagInfoLength (12). If there is not enough space
* in the buffer, check if the buffer is still sufficient for the requirements
* of this element, which may need only 8 instead of 12 bytes.
*/
if (outStream.avail() >= 4)
{
/* if there is no value, Length (member variable) shall be set to 0 */
if (! accessPossible) setLengthField(0);
/* write tag and length information (and possibly also data type information) to the stream, */
/* mind the transfer syntax and remember the amount of bytes that have been written */
errorFlag = writeTag(outStream, getTag(), oxfer);
/* if the writing was successful, set this element's transfer */
/* state to ERW_inWork and the amount of transferred bytes to 0 */
if (errorFlag.good())
{
setTransferState(ERW_inWork);
setTransferredBytes(0);
}
} else
errorFlag = EC_StreamNotifyClient;
}
/* if there is a value that has to be written to the stream */
/* and if this element's transfer state is ERW_inWork */
if (accessPossible && getTransferState() == ERW_inWork)
{
Uint32 len = 0;
if (valueLoaded())
{
/* write as many bytes as possible to the stream starting at value[getTransferredBytes()] */
/* (note that the bytes value[0] to value[getTransferredBytes()-1] have already been */
/* written to the stream) */
len = OFstatic_cast(Uint32, outStream.write(&value[getTransferredBytes()], getLengthField() - getTransferredBytes()));
/* increase the amount of bytes which have been transferred correspondingly */
incTransferredBytes(len);
/* see if there is something fishy with the stream */
errorFlag = outStream.status();
}
else
{
Uint32 buflen = 0;
OFBool done = getTransferredBytes() == getLengthField();
while (! done)
{
// re-fill buffer from file if empty
errorFlag = wcache->fillBuffer(*this);
buflen = wcache->contentLength();
if (errorFlag.good())
{
// write as many bytes from cache buffer to stream as possible
len = wcache->writeBuffer(outStream);
/* increase the amount of bytes which have been transferred correspondingly */
incTransferredBytes(len);
/* see if there is something fishy with the stream */
errorFlag = outStream.status();
}
// stop writing if something went wrong, we were unable to send all of the buffer content
// (which indicates that the output stream needs to be flushed, or everything was sent out.
done = errorFlag.bad() || (len < buflen) || (getTransferredBytes() == getLengthField());
}
}
/* if the amount of transferred bytes equals the length of the element's value, the */
/* entire value has been written to the stream. Thus, this element's transfer state */
/* has to be set to ERW_ready. If this is not the case but the error flag still shows */
/* an ok value, there was no more space in the stream and a corresponding return value */
/* has to be set. (Isn't the "else if" part superfluous?!?) */
if (getLengthField() == getTransferredBytes()) setTransferState(ERW_ready);
else if (errorFlag.good()) errorFlag = EC_StreamNotifyClient;
}
}
}
}
/* return result value */
return errorFlag;
}
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