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/*
*
* Copyright (C) 2016-2024, Open Connections GmbH
* All rights reserved. See COPYRIGHT file for details.
*
* This software and supporting documentation are maintained by
*
* OFFIS e.V.
* R&D Division Health
* Escherweg 2
* D-26121 Oldenburg, Germany
*
*
* Module: dcmpmap
*
* Author: Michael Onken
*
* Purpose: Class for managing the Parametric Map IOD
*
*/
#include "dcmtk/config/osconfig.h"
#include "dcmtk/dcmpmap/dpmparametricmapiod.h"
#include "dcmtk/dcmiod/iodutil.h"
#include "dcmtk/dcmdata/dcvrobow.h"
#include "dcmtk/dcmdata/dcvrfl.h"
#include "dcmtk/dcmdata/dcvrfd.h"
#include "dcmtk/dcmdata/dcuid.h"
// ----------------------------------------------------------------------------
// Class SetImagePixelModuleVisitor:
// Class for setting Image Pixel Module attributes based on pixel data type
// ----------------------------------------------------------------------------
struct DPMParametricMapIOD::SetImagePixelModuleVisitor
{
SetImagePixelModuleVisitor(const Uint16 r,
const Uint16 c)
: rows(r)
, cols(c)
{
}
template<typename T>
OFCondition operator()( T& t )
{
if ( (rows == 0) || (cols == 0) )
{
DCMPMAP_ERROR("Rows/Cols must be non-zero but are : " << rows << "/" << cols);
return DPM_InvalidDimensions;
}
t.setRows(rows);
t.setColumns(cols);
setSpecificValues(t);
return EC_Normal;
}
template<typename T>
void setSpecificValues(IODImagePixelModule<T>& p)
{
p.setBitsAllocated(16);
p.setBitsStored(16);
p.setHighBit(15);
p.setSamplesPerPixel(1);
p.setPhotometricInterpretation("MONOCHROME2");
p.setPixelRepresentation(OFis_signed<T>::value ? 1 : 0);
}
void setSpecificValues(IODFloatingPointImagePixelModule& p)
{
// Avoid compiler warning about unused parameter "p"
(void)p;
// No specific values for 32 bit floating point data to be set
}
void setSpecificValues(IODDoubleFloatingPointImagePixelModule& p)
{
// Avoid compiler warning about unused parameter "p"
(void)p;
// No specific values for 64 bit floating point data to be set
}
// Members
const Uint16 rows;
const Uint16 cols;
};
struct DPMParametricMapIOD::ReadVisitor
{
// Inner class that implements the specializations for different
// pixel data types
template<typename T>
class DcmElementOf;
ReadVisitor(DcmItem& srcItem,
DPMParametricMapIOD& m)
: item(srcItem)
, map(m)
{
// Nothing to do
}
OFCondition operator()(OFmonostate)
{
return DPM_InvalidPixelData;
}
template<typename ImagePixel>
OFCondition operator()(ImagePixel& pixel)
{
OFCondition result = map.readGeneric(item);
if (result.good())
{
Uint16 rows, cols;
Uint32 numFrames;
size_t numBytesFrame = 0;
rows = cols = 0;
map.getRows(rows);
map.getColumns(cols);
numFrames = DcmIODUtil::limitMaxFrames(map.getFunctionalGroups().getNumberOfFrames(),
"Functional groups implicate more than 2147483647 frames, only 2147483647 will be used");
if (!rows || !cols || !numFrames)
{
DCMPMAP_ERROR("Rows (" << rows << "), Columns (" << cols << ") and Number of Frames (" << numFrames << ") must not be 0");
return DPM_InvalidPixelInfo;
}
numBytesFrame = OFstatic_cast(size_t,rows) * cols * sizeof(typename ImagePixel::value_type);
result = readSpecific(pixel, numFrames, numBytesFrame);
}
return result;
}
template<typename T>
OFCondition readSpecific(IODImagePixelModule<T>& p,
const Uint32 numFrames,
const size_t numBytesFrame)
{
// Avoid compiler warning about unused parameter
(void)p;
unsigned long numTotalWords = 0;
const Uint16* pixData = NULL;
if (item.findAndGetUint16Array(DCM_PixelData, pixData, &numTotalWords).good())
{
if (numTotalWords == numBytesFrame * numFrames / 2 /* we compare to num words not num bytes */)
{
for (Uint32 n = 0; n < numFrames; n++)
{
DcmIODTypes::Frame* f = new DcmIODTypes::Frame;
if (f)
{
f->length = numBytesFrame;
f->pixData = new Uint8[f->length];
memcpy(f->pixData, pixData + n*numBytesFrame/2, numBytesFrame);
map.m_Frames.push_back(f);
}
else
{
return EC_MemoryExhausted;
}
}
}
else
{
DCMPMAP_ERROR("Invalid number of pixels: Expected " << numBytesFrame * numFrames / 2 << " pixels but Pixel Data has " << numTotalWords << " pixels");
return DPM_InvalidPixelInfo;
}
}
else
{
DCMPMAP_ERROR("No Pixel Data element found");
return DPM_NoPixelData;
}
return EC_Normal;
}
OFCondition readSpecific(IODFloatingPointImagePixelModule& p,
const Uint32 numFrames,
const size_t numBytesFrame)
{
// Avoid compiler warning on unused parameter
(void)p;
unsigned long numTotalFloats = 0;
const Float32* pixData = NULL;
if (item.findAndGetFloat32Array(DCM_FloatPixelData, pixData, &numTotalFloats).good())
{
if (numTotalFloats == numBytesFrame * numFrames / 4 /* we compare to 32 bit floats not bytes */)
{
for (Uint32 n=0; n < numFrames; n++)
{
DcmIODTypes::Frame* f = new DcmIODTypes::Frame;
if (f)
{
f->length = numBytesFrame;
f->pixData = new Uint8[f->length];
memcpy(f->pixData, pixData + n*numBytesFrame/4, numBytesFrame);
map.m_Frames.push_back(f);
}
else
{
return EC_MemoryExhausted;
}
}
}
else
{
DCMPMAP_ERROR("Invalid number of pixels: Expected " << numBytesFrame * numFrames / 4 << " pixels but Float Pixel Data has " << numTotalFloats << " pixels");
return DPM_InvalidPixelInfo;
}
}
else
{
DCMPMAP_ERROR("No Float Pixel Data element found");
return DPM_NoPixelData;
}
return EC_Normal;
}
OFCondition readSpecific(IODDoubleFloatingPointImagePixelModule& p,
const Uint32 numFrames,
const size_t numBytesFrame)
{
// Avoid compiler warning on unused parameter
(void)p;
unsigned long numTotalFloats = 0;
const Float64* pixData = NULL;
if (item.findAndGetFloat64Array(DCM_DoubleFloatPixelData, pixData, &numTotalFloats).good())
{
if (numTotalFloats == numBytesFrame * numFrames / 8 /* we compare to 64 bit floats not bytes */)
{
for (Uint16 n=0; n < numFrames; n++)
{
DcmIODTypes::Frame* f = new DcmIODTypes::Frame;
if (f)
{
f->length = numBytesFrame;
f->pixData = new Uint8[f->length];
memcpy(f->pixData, pixData + n*numBytesFrame/8, numBytesFrame);
map.m_Frames.push_back(f);
}
else
{
return EC_MemoryExhausted;
}
}
}
else
{
DCMPMAP_ERROR("Invalid number of pixels: Expected " << numBytesFrame * numFrames / 8 << " pixels but Double Float Pixel Data has " << numTotalFloats << " pixels");
return DPM_InvalidPixelInfo;
}
}
else
{
DCMPMAP_ERROR("No Double Float Pixel Data element found");
return DPM_NoPixelData;
}
return EC_Normal;
}
// Members, i.e. parameters to operator()
DcmItem& item;
DPMParametricMapIOD& map;
};
// ----------------------------------------------------------------------------
// Class WriteVisitor:
// Class for adding DICOM pixel data bulk element based on type pixel data type
// ----------------------------------------------------------------------------
// Generic implementation, template specialization is done in inner
// DcmElementOf class
struct DPMParametricMapIOD::WriteVisitor
{
// Inner class that implements the specializations for different
// pixel data types
template<typename T>
class DcmElementOf;
// Constructor, sets parameters the visitor works on in operator()
WriteVisitor(DcmItem& i,
DPMParametricMapIOD& m)
: item(i)
, map(m)
{
// Nothing else to do
}
//
OFCondition operator()(OFmonostate)
{
DCMPMAP_ERROR("Could not write pixel data: Invalid pixel data type, only 16 bit integer as well as 32 and 64 bit float data are handled");
return DPM_NoPixelData;
}
template<typename ImagePixel>
OFCondition operator()(ImagePixel& pixel)
{
// Avoid compiler warning about unused parameter "pixel"
(void)pixel;
// Input data is checked before
Uint16 rows = 0;
Uint16 cols = 0;
map.getRows(rows);
map.getColumns(cols);
const size_t numFrames = map.m_Frames.size();
const size_t numBytesFrame = map.m_Frames[0]->length;
const size_t numPixelsFrame = rows * cols;
// Creates the correct pixel data element, based on the image pixel module used.
// I.e. For integer data, the "Pixel Data" element is used, i.e. the DcmElement type
// instantiated by DcmElementOf is of DCMTK type DcmOtherByteOtherWord while for
// IODFloatingPointImagePixelModule which has floating point pixel data, DcmFloatingPointSingle
// is used.
DcmElementOf<ImagePixel> element;
// copy all frames into map's frame structure
if (OFTypename ImagePixel::value_type* ptr = element.getData(numBytesFrame * numFrames))
{
for (size_t f = 0; f < numFrames; ++f)
{
memcpy(ptr, map.m_Frames[f]->pixData, numBytesFrame);
ptr += numPixelsFrame;
}
OFCondition result = element.put(item);
// Write generic (i.e. non pixel data-specific attributes)
return result.good() ? map.writeGeneric(item) : result;
}
return EC_MemoryExhausted;
}
// Members, i.e. parameters to operator()
DcmItem& item;
DPMParametricMapIOD& map;
};
// ----------------------------------------------------------------------------
// Class WriteVisitor:DcmElementOf<IODImagePixelModule<PixelType> >:
// Offers creation and insertion for Pixel Data element as used for
// int-based pixel data. So far, Uint8, Sint8, Uint16 and Sint16 pixel
// data is supported (relates to OB/OW data type for DICOM Pixel data)
// ----------------------------------------------------------------------------
template<typename PixelType>
class DPMParametricMapIOD::WriteVisitor::DcmElementOf<IODImagePixelModule<PixelType> >
{
public:
DcmElementOf()
: m_pElement(new DcmOtherByteOtherWord(DCM_PixelData))
{
// Nothing else to do
}
PixelType* getData(const size_t count);
OFCondition put(DcmItem& itemPara)
{
OFCondition result = itemPara.insert(m_pElement.get(), OFTrue);
if (result.good())
m_pElement.release();
return result;
}
private:
OFunique_ptr<DcmOtherByteOtherWord> m_pElement;
};
template<>
Uint16* DPMParametricMapIOD::WriteVisitor::DcmElementOf<IODImagePixelModule<Uint16> >::getData(const size_t size /* num total pixels */)
{
if (m_pElement)
if (m_pElement->setVR(EVR_OW).good())
{
Uint16* result;
if (m_pElement->createUint16Array(OFstatic_cast(Uint32, size/2), result).good())
return result;
}
return OFnullptr;
}
template<>
Sint16* DPMParametricMapIOD::WriteVisitor::DcmElementOf<IODImagePixelModule<Sint16> >::getData(const size_t size)
{
if (m_pElement)
if (m_pElement->setVR(EVR_OW).good())
{
Uint16* result;
if (m_pElement->createUint16Array(OFstatic_cast(Uint32, size/2), result).good())
return OFreinterpret_cast(Sint16*, result);
}
return OFnullptr;
}
// ----------------------------------------------------------------------------
// Class WriteVisitor:DcmElementOf<IODImagePixelModule<IODFloatingPointImagePixelModule> >:
// Offers creation and insertion for Pixel Data element as used for
// 32 bit float-based pixel data as used in Parametric Map IOD
// ----------------------------------------------------------------------------
template<>
class DPMParametricMapIOD::WriteVisitor::DcmElementOf<IODFloatingPointImagePixelModule>
{
public:
DcmElementOf()
: m_pElement(new DcmFloatingPointSingleAlloc(DCM_FloatPixelData))
{
}
Float32* getData(const size_t size)
{
if (m_pElement)
{
Float32* result;
if (m_pElement->createFloat32Array(size, result).good())
return result;
}
return OFnullptr;
}
OFCondition put(DcmItem& itemPara)
{
OFCondition result = itemPara.insert(m_pElement.get(), OFTrue);
if (result.good())
m_pElement.release();
return result;
}
private:
struct DcmFloatingPointSingleAlloc : DcmFloatingPointSingle
{
DcmFloatingPointSingleAlloc(const DcmTagKey& tag)
: DcmFloatingPointSingle(tag)
{
}
OFCondition createFloat32Array(const size_t size,
Float32*& result)
{
OFCondition status = createEmptyValue(OFstatic_cast(Uint32, size));
result = OFreinterpret_cast(Float32*, getValue());
return status;
}
};
OFunique_ptr<DcmFloatingPointSingleAlloc> m_pElement;
};
// ----------------------------------------------------------------------------
// Class WriteVisitor:DcmElementOf<IODImagePixelModule<IODFloatingPointImagePixelModule> >:
// Offers creation and insertion for Pixel Data element as used for
// 64 bit float-based pixel data as used in Parametric Map IOD.
// ----------------------------------------------------------------------------
template<>
class DPMParametricMapIOD::WriteVisitor::DcmElementOf<IODDoubleFloatingPointImagePixelModule>
{
public:
DcmElementOf()
: m_pElement(new DcmFloatingPointDoubleAlloc(DCM_DoubleFloatPixelData))
{
}
Float64* getData(const size_t size)
{
if (m_pElement)
{
Float64* result;
if (m_pElement->createFloat64Array(size, result).good())
return result;
}
return OFnullptr;
}
OFCondition put(DcmItem& itemPara)
{
OFCondition result = itemPara.insert(m_pElement.get(), OFTrue);
if (result.good())
m_pElement.release();
return result;
}
private:
struct DcmFloatingPointDoubleAlloc : DcmFloatingPointDouble
{
DcmFloatingPointDoubleAlloc(const DcmTagKey& tag)
: DcmFloatingPointDouble(tag)
{
}
OFCondition createFloat64Array(const size_t size, Float64*& result)
{
OFCondition status = createEmptyValue(OFstatic_cast(Uint32, size));
result = OFreinterpret_cast(Float64*, getValue());
return status;
}
};
OFunique_ptr<DcmFloatingPointDoubleAlloc> m_pElement;
};
// Helper "class" that returns Frames offering API to the pixel's frame bulk
// data by offering the dedicated data type, e.g. Float32 instead of the
// internally stored generic Uint8 array.
//
struct DPMParametricMapIOD::GetFramesVisitor
{
GetFramesVisitor(DPMParametricMapIOD& m)
: map(m)
{
}
OFCondition operator()(OFmonostate)
{
return DPM_InvalidPixelData;
}
template<typename ImagePixel>
Frames<OFTypename ImagePixel::value_type> operator()(ImagePixel&)
{
return Frames<OFTypename ImagePixel::value_type>(map);
}
DPMParametricMapIOD& map;
};
/** Helper "class" that returns Frames offering API to the pixel's frame bulk
* data by offering the dedicated data type, e.g. Float32 instead of the
* internally stored generic Uint8 array.
*/
struct DPMParametricMapIOD::ReadFramesVisitor
{
ReadFramesVisitor(DcmItem& i,
DPMParametricMapIOD& m)
: map(m), item(i)
{
// Nothing else to do
}
OFCondition operator()(OFmonostate)
{
return DPM_InvalidPixelData;
}
template<typename ImagePixel>
OFCondition operator()(ImagePixel&)
{
return Frames<OFTypename ImagePixel::value_type>(map);
}
// Members, i.e. parameters to operator()
DPMParametricMapIOD& map;
DcmItem& item;
};
template<typename PixelType>
DPMParametricMapIOD::Frames<PixelType>::Frames(DPMParametricMapIOD& map)
: m_Map(map)
{
}
template<typename PixelType>
OFCondition DPMParametricMapIOD::Frames<PixelType>::addFrame(PixelType* data,
const size_t numPixels,
const OFVector<FGBase*>& perFrameInformation)
{
OFCondition result;
if (data && numPixels)
{
if (!perFrameInformation.empty())
{
OFunique_ptr<DcmIODTypes::Frame> f(new DcmIODTypes::Frame);
if (f)
{
f->length = numPixels * sizeof(PixelType);
f->pixData = new Uint8[f->length];
memcpy(f->pixData, data, f->length);
m_Map.m_Frames.push_back(f.release());
OFVector<FGBase*>::const_iterator fg = perFrameInformation.begin();
while ( result.good() && (fg != perFrameInformation.end()) )
{
result = m_Map.m_FGInterface.addPerFrame(OFstatic_cast(Uint32, m_Map.m_Frames.size()), **fg);
if (result.bad())
{
DCMPMAP_ERROR("Could not add functional group: " << DcmFGTypes::FGType2OFString((*fg)->getType()));
break;
}
++fg;
}
}
}
}
// Clean up if necessary
if (result.bad())
m_Map.m_FGInterface.deleteFrame(OFstatic_cast(Uint32, m_Map.m_Frames.size()));
return result;
}
template<typename PixelType>
PixelType* DPMParametricMapIOD::Frames<PixelType>::getFrame(const size_t frameNumber)
{
if (frameNumber < m_Map.m_Frames.size())
{
return (PixelType*)(m_Map.m_Frames[frameNumber]->pixData);
}
return NULL;
}
// Protected constructor
DPMParametricMapIOD::DPMParametricMapIOD()
: DPMParametricMapBase()
, m_ContentIdentification()
, m_Frames()
{
}
// Protected constructor
template<typename ImagePixel>
DPMParametricMapIOD::DPMParametricMapIOD(OFin_place_type_t(ImagePixel))
: DPMParametricMapBase(OFin_place<ImagePixel>)
, m_ContentIdentification()
, m_Frames()
{
}
// Static method used to create a new Parametric Map IOD object
template<typename ImagePixel>
OFvariant<OFCondition,DPMParametricMapIOD> DPMParametricMapIOD::create(const OFString& modality,
const OFString& seriesNumber,
const OFString& instanceNumber,
const Uint16 rows,
const Uint16 columns,
const IODEnhGeneralEquipmentModule::EquipmentInfo& equipmentInfo,
const ContentIdentificationMacro& contentIdentification,
const OFString& imageFlavor,
const OFString& derivedPixelContrast,
const DPMTypes::ContentQualification& contentQualification)
{
DPMParametricMapIOD map(OFin_place<ImagePixel>);
OFCondition status = SetImagePixelModuleVisitor(rows, columns)(*OFget<ImagePixel>(&map.getImagePixel()));
if (status.bad())
return status;
status = map.init
(
modality,
seriesNumber,
instanceNumber,
equipmentInfo,
contentIdentification,
imageFlavor,
derivedPixelContrast,
contentQualification
);
if(status.bad())
return status;
return map;
}
OFCondition DPMParametricMapIOD::init(const OFString& modality,
const OFString& seriesNumber,
const OFString& instanceNumber,
const IODEnhGeneralEquipmentModule::EquipmentInfo& equipmentInfo,
const ContentIdentificationMacro& contentIdentification,
const OFString& imageFlavor,
const OFString& derivedPixelContrast,
const DPMTypes::ContentQualification& contentQualification)
{
if (!equipmentInfo.isDataComplete())
{
DCMPMAP_ERROR("Equipment info incomplete");
return DPM_InvalidAttributeValue;
}
OFCondition status = OFconst_cast(ContentIdentificationMacro*, &contentIdentification)->check();
if (status.bad())
{
DCMPMAP_ERROR("Content identification is invalid: " << status.text());
return DPM_InvalidAttributeValue;
}
status = OFconst_cast(ContentIdentificationMacro*, &contentIdentification)->check();
if (imageFlavor.empty() || derivedPixelContrast.empty())
{
DCMPMAP_ERROR
(
"Image Type value 3 (Image Flavor) and 4 (Derived Pixel Contrast) must be set but are "
<< imageFlavor << "/" << derivedPixelContrast
);
return DPM_InvalidAttributeValue;
}
if (!DPMTypes::cqValid(contentQualification))
{
DCMPMAP_ERROR("Content Qualification not set");
return DPM_InvalidAttributeValue;
}
// All data is valid, copy to object
status = getIODEnhGeneralEquipmentModule().set(equipmentInfo);
if (status.bad())
{
DCMPMAP_ERROR("Error setting equipment info: " << status.text());
return DPM_InvalidAttributeValue;
}
m_ContentIdentification = contentIdentification;
OFStringStream ss;
ss << "DERIVED\\PRIMARY\\" << imageFlavor << "\\" << derivedPixelContrast;
OFSTRINGSTREAM_GETOFSTRING(ss, imgType);
status = getIODGeneralImageModule().setImageType(imgType);
if (status.bad())
{
DCMPMAP_ERROR("Error setting Image Type: " << status.text());
return DPM_InvalidAttributeValue;
}
status = m_DPMParametricMapSeriesModule.setModality(modality);
if (status.bad())
{
DCMPMAP_ERROR("Could not set modality value \"" << modality << "\": " << status.text());
return DPM_InvalidAttributeValue;
}
status = m_DPMParametricMapSeriesModule.setSeriesNumber(seriesNumber);
if (status.bad())
{
DCMPMAP_ERROR("Could not set Series Number: " << status.text());
return DPM_InvalidAttributeValue;
}
status = m_IODMultiFrameFGModule.setInstanceNumber(instanceNumber);
if (status.bad())
return status;
m_DPMParametricMapImageModule.setContentQualification(DPMTypes::cq2Str(contentQualification));
m_DPMParametricMapImageModule.setRecognizableVisualFeatures("YES");
m_DPMParametricMapImageModule.setBurnedInAnnotation("NO");
m_DPMParametricMapImageModule.setLossyImageCompression("00");
m_DPMParametricMapImageModule.setPresentationLUTShape("IDENTITY");
getSOPCommon().setSOPClassUID(UID_ParametricMapStorage);
DcmIODUtil::setContentDateAndTimeNow(m_IODMultiFrameFGModule);
return EC_Normal;
}
OFCondition DPMParametricMapIOD::read(DcmItem& dataset)
{
return OFvisit<OFCondition>(ReadVisitor(dataset,*this),getImagePixel());
}
OFCondition DPMParametricMapIOD::write(DcmItem& dataset)
{
if (!check())
return DPM_InvalidAttributeValue;
return OFvisit<OFCondition>(WriteVisitor(dataset,*this),getImagePixel());
}
OFvariant<OFCondition,DPMParametricMapIOD*> DPMParametricMapIOD::loadDataset(DcmDataset& dataset)
{
OFString sopClass;
DPMParametricMapIOD *map = NULL;
if (dataset.findAndGetOFStringArray(DCM_SOPClassUID, sopClass).good())
{
if (sopClass == UID_ParametricMapStorage)
{
DcmElement *elem = NULL;
if (dataset.findAndGetElement(DCM_PixelData, elem).good())
{
Uint16 pr = 0;
if (dataset.findAndGetUint16(DCM_PixelRepresentation, pr).good())
{
if (pr == 0)
{
map = new DPMParametricMapIOD(OFin_place<IODImagePixelModule<Uint16> >);
}
else
{
map = new DPMParametricMapIOD(OFin_place<IODImagePixelModule<Sint16> >);
}
}
else
{
DCMPMAP_WARN("Pixel Data element found but no Pixel Representation set, assuming 16 bit unsigned integer data");
map = new DPMParametricMapIOD(OFin_place<IODImagePixelModule<Uint16> >);
}
}
else if (dataset.findAndGetElement(DCM_FloatPixelData, elem).good())
{
map = new DPMParametricMapIOD(OFin_place<IODFloatingPointImagePixelModule>);
}
else if (dataset.findAndGetElement(DCM_DoubleFloatPixelData, elem).good())
{
map = new DPMParametricMapIOD(OFin_place<IODDoubleFloatingPointImagePixelModule>);
}
else
{
return DPM_NoPixelData;
}
if (map == NULL)
{
return EC_MemoryExhausted;
}
}
else
{
DCMPMAP_ERROR("Invalid SOP Class: " << sopClass << ", only Parametric Map Storage (1.2.840.10008.5.1.4.1.1.30) supported");
return DPM_InvalidSOPClass;
}
}
OFCondition result = OFvisit<OFCondition>(ReadVisitor(dataset, *map), map->getImagePixel());
if (result.good())
return map;
else
return result;
}
OFvariant<OFCondition,DPMParametricMapIOD*> DPMParametricMapIOD::loadFile(const OFString& filename)
{
DcmFileFormat dcmff;
OFCondition cond = dcmff.loadFile(filename.c_str());
OFvariant<OFCondition,DPMParametricMapIOD*> result;
if (cond.good())
{
result = loadDataset( *(dcmff.getDataset()) );
return result;
}
else
{
return cond;
}
}
DPMParametricMapIOD::~DPMParametricMapIOD()
{
DcmIODUtil::freeContainer(m_Frames);
// nothing else to do for now
}
OFCondition DPMParametricMapIOD::addForAllFrames(const FGBase& group)
{
return m_FGInterface.addShared(group);
}
OFBool DPMParametricMapIOD::check()
{
OFString val;
m_DPMParametricMapImageModule.getRecognizableVisualFeatures(val);
if (DPMTypes::rvfValid(DPMTypes::str2Rvf(val)))
{
m_DPMParametricMapImageModule.getContentQualification(val);
if (DPMTypes::cqValid(DPMTypes::str2Cq(val)))
{
if (!m_Frames.empty())
{
return OFTrue;
}
else
{
DCMPMAP_ERROR("No frame data defined in Parametric Map");
}
}
else
{
DCMPMAP_ERROR("Invalid value for Recognizable Visual Features: " << val);
}
}
else
{
DCMPMAP_ERROR("Invalid value for Content Qualification" << val);
}
return OFFalse;
}
OFCondition DPMParametricMapIOD::getColumns(Uint16& cols)
{
return getImagePixel().getColumns(cols);
}
OFCondition DPMParametricMapIOD::getRows(Uint16& rows)
{
return getImagePixel().getRows(rows);
}
size_t DPMParametricMapIOD::getNumberOfFrames() const
{
return OFconst_cast(DPMParametricMapIOD*,this)->m_FGInterface.getNumberOfFrames();
}
OFCondition DPMParametricMapIOD::setRecognizableVisualFeatures(const DPMTypes::RecognizableVisibleFeatures yesOrNo)
{
return DPMTypes::rvfValid(yesOrNo)
?
m_DPMParametricMapImageModule.setRecognizableVisualFeatures(DPMTypes::rvf2Str(yesOrNo))
:
DPM_InvalidAttributeValue
;
}
OFCondition DPMParametricMapIOD::readGeneric(DcmItem& dataset)
{
OFCondition result = DPMParametricMapBase::read(dataset);
if (result.good())
result = m_ContentIdentification.read(dataset);
return result;
}
OFCondition DPMParametricMapIOD::writeGeneric(DcmItem& dataset)
{
getFrameOfReference().ensureFrameOfReferenceUID();
m_IODMultiFrameFGModule.setNumberOfFrames(DcmIODUtil::limitMaxFrames(m_Frames.size(), "Maximum number of frames exceeded, will write 2147483647"));
OFCondition result = m_ContentIdentification.write(dataset);
if (result.good())
{
result = DPMParametricMapBase::write(dataset);
}
return result;
}
DPMTypes::ContentQualification DPMParametricMapIOD::getContentQualification()
{
OFString val;
m_DPMParametricMapImageModule.getContentQualification(val);
return DPMTypes::str2Cq(val);
}
DPMTypes::RecognizableVisibleFeatures DPMParametricMapIOD::getRecognizableVisualFeatures()
{
OFString val;
DPMParametricMapIOD::m_DPMParametricMapImageModule.getRecognizableVisualFeatures(val);
return DPMTypes::str2Rvf(val);
}
DPMParametricMapIOD::FramesType DPMParametricMapIOD::getFrames()
{
return OFvisit<FramesType>(GetFramesVisitor(*this),getImagePixel());
}
OFCondition DPMParametricMapIOD::decompress(DcmDataset& dset)
{
DcmXfer xfer = dset.getOriginalXfer();
OFCondition result;
// If the original transfer syntax could have been lossy, print warning
if (dset.hasRepresentation(EXS_LittleEndianExplicit, NULL))
{
if (xfer.isPixelDataCompressed() && (xfer != EXS_RLELossless))
{
DCMPMAP_WARN("Dataset has been compressed using a (possibly) lossy compression scheme (ignored)");
}
}
// If the original transfer syntax refers to compressed pixel data and we do not
// already have an uncompressed version, decompress or reject the file
else if (xfer.isPixelDataCompressed())
{
// RLE compression is fine (truly lossless)
if (xfer == EXS_RLELossless)
{
DCMPMAP_DEBUG("DICOM file is RLE-compressed, converting to uncompressed transfer syntax first");
result = DcmIODUtil::decompress(dset);
}
else // We do not accept any transfer syntax that could be lossy compressed
{
DCMPMAP_ERROR("Transfer syntax " << xfer.getXferName() << " uses lossy compression, not supported for Parametric Map objects!");
result = IOD_EC_CannotDecompress;
}
}
return result;
}
// Explicit instantiations using all permitted Parametric Map data types
template class DPMParametricMapIOD::Frames<Uint16>;
template class DPMParametricMapIOD::Frames<Sint16>;
template class DPMParametricMapIOD::Frames<Float32>;
template class DPMParametricMapIOD::Frames<Float64>;
#ifdef __SUNPRO_CC
// the SunPro compiler would complain that the DCMTK_DCMPMAP_EXPORT attribute cannot be applied
// to an explicit template instantiation.
// Helper macro to not to write the same thing multiple times
#define INSTANTIATE_CREATE(T) template OFvariant<OFCondition,DPMParametricMapIOD>\
DPMParametricMapIOD::create<T >(const OFString& modality,\
const OFString& seriesNumber,\
const OFString& instanceNumber,\
const Uint16 rows,\
const Uint16 columns,\
const IODEnhGeneralEquipmentModule::EquipmentInfo& equipmentInfo,\
const ContentIdentificationMacro& contentIdentification,\
const OFString& imageFlavor,\
const OFString& derivedPixelContrast,\
const DPMTypes::ContentQualification& contentQualification)
#else
// Helper macro to not to write the same thing multiple times
#define INSTANTIATE_CREATE(T) template DCMTK_DCMPMAP_EXPORT OFvariant<OFCondition,DPMParametricMapIOD>\
DPMParametricMapIOD::create<T >(const OFString& modality,\
const OFString& seriesNumber,\
const OFString& instanceNumber,\
const Uint16 rows,\
const Uint16 columns,\
const IODEnhGeneralEquipmentModule::EquipmentInfo& equipmentInfo,\
const ContentIdentificationMacro& contentIdentification,\
const OFString& imageFlavor,\
const OFString& derivedPixelContrast,\
const DPMTypes::ContentQualification& contentQualification)
#endif
// Instantiate all four permitted create() methods
INSTANTIATE_CREATE(IODImagePixelModule<Uint16>);
INSTANTIATE_CREATE(IODImagePixelModule<Sint16>);
INSTANTIATE_CREATE(IODFloatingPointImagePixelModule);
INSTANTIATE_CREATE(IODDoubleFloatingPointImagePixelModule);
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