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// ---------------------------------------------------------------------
//
// Copyright (C) 2005 - 2018 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE at
// the top level of the deal.II distribution.
//
// ---------------------------------------------------------------------
#include <deal.II/base/function_parser.h>
#include <deal.II/base/utilities.h>
#include <deal.II/base/thread_management.h>
#include <deal.II/lac/vector.h>
#include <cmath>
#include <map>
#include <boost/random.hpp>
#include <boost/math/special_functions/erf.hpp>
#ifdef DEAL_II_WITH_MUPARSER
#include <muParser.h>
#else
namespace fparser
{
class FunctionParser
{};
}
#endif
DEAL_II_NAMESPACE_OPEN
template <int dim>
FunctionParser<dim>::FunctionParser(const unsigned int n_components,
const double initial_time,
const double h)
:
AutoDerivativeFunction<dim>(h, n_components, initial_time),
initialized (false),
n_vars (0)
{}
// We deliberately delay the definition of the default destructor
// so that we don't need to include the definition of mu::Parser
// in the header file.
template <int dim>
FunctionParser<dim>::~FunctionParser() = default;
#ifdef DEAL_II_WITH_MUPARSER
template <int dim>
void FunctionParser<dim>::initialize (const std::string &variables,
const std::vector<std::string> &expressions,
const std::map<std::string, double> &constants,
const bool time_dependent)
{
this->fp.clear(); // this will reset all thread-local objects
this->constants = constants;
this->var_names = Utilities::split_string_list(variables, ',');
this->expressions = expressions;
AssertThrow(((time_dependent)?dim+1:dim) == var_names.size(),
ExcMessage("Wrong number of variables"));
// We check that the number of
// components of this function
// matches the number of components
// passed in as a vector of
// strings.
AssertThrow(this->n_components == expressions.size(),
ExcInvalidExpressionSize(this->n_components,
expressions.size()) );
// Now we define how many variables
// we expect to read in. We
// distinguish between two cases:
// Time dependent problems, and not
// time dependent problems. In the
// first case the number of
// variables is given by the
// dimension plus one. In the other
// case, the number of variables is
// equal to the dimension. Once we
// parsed the variables string, if
// none of this is the case, then
// an exception is thrown.
if (time_dependent)
n_vars = dim+1;
else
n_vars = dim;
// create a parser object for the current thread we can then query
// in value() and vector_value(). this is not strictly necessary
// because a user may never call these functions on the current
// thread, but it gets us error messages about wrong formulas right
// away
init_muparser ();
// finally set the initialization bit
initialized = true;
}
namespace internal
{
// convert double into int
int mu_round(double val)
{
return static_cast<int>(val + ((val>=0.0) ? 0.5 : -0.5) );
}
double mu_if(double condition, double thenvalue, double elsevalue)
{
if (mu_round(condition))
return thenvalue;
else
return elsevalue;
}
double mu_or(double left, double right)
{
return (mu_round(left)) || (mu_round(right));
}
double mu_and(double left, double right)
{
return (mu_round(left)) && (mu_round(right));
}
double mu_int(double value)
{
return static_cast<double>(mu_round(value));
}
double mu_ceil(double value)
{
return ceil(value);
}
double mu_floor(double value)
{
return floor(value);
}
double mu_cot(double value)
{
return 1.0/tan(value);
}
double mu_csc(double value)
{
return 1.0/sin(value);
}
double mu_sec(double value)
{
return 1.0/cos(value);
}
double mu_log(double value)
{
return log(value);
}
double mu_pow(double a, double b)
{
return std::pow(a, b);
}
double mu_erfc(double value)
{
return boost::math::erfc(value);
}
// returns a random value in the range [0,1] initializing the generator
// with the given seed
double mu_rand_seed(double seed)
{
static Threads::Mutex rand_mutex;
Threads::Mutex::ScopedLock lock(rand_mutex);
static boost::random::uniform_real_distribution<> uniform_distribution(0,1);
// for each seed an unique random number generator is created,
// which is initialized with the seed itself
static std::map<double, boost::random::mt19937> rng_map;
if (rng_map.find(seed) == rng_map.end())
rng_map[seed] = boost::random::mt19937(static_cast<unsigned int>(seed));
return uniform_distribution(rng_map[seed]);
}
// returns a random value in the range [0,1]
double mu_rand()
{
static Threads::Mutex rand_mutex;
Threads::Mutex::ScopedLock lock(rand_mutex);
static boost::random::uniform_real_distribution<> uniform_distribution(0,1);
static boost::random::mt19937 rng(static_cast<unsigned long>(std::time(nullptr)));
return uniform_distribution(rng);
}
}
template <int dim>
void FunctionParser<dim>::init_muparser() const
{
// check that we have not already initialized the parser on the
// current thread, i.e., that the current function is only called
// once per thread
Assert (fp.get().size()==0, ExcInternalError());
// initialize the objects for the current thread (fp.get() and
// vars.get())
fp.get().reserve(this->n_components);
vars.get().resize(var_names.size());
for (unsigned int component=0; component<this->n_components; ++component)
{
fp.get().emplace_back(new mu::Parser());
for (std::map< std::string, double >::const_iterator constant = constants.begin();
constant != constants.end(); ++constant)
{
fp.get()[component]->DefineConst(constant->first.c_str(), constant->second);
}
for (unsigned int iv=0; iv<var_names.size(); ++iv)
fp.get()[component]->DefineVar(var_names[iv].c_str(), &vars.get()[iv]);
// define some compatibility functions:
fp.get()[component]->DefineFun("if",internal::mu_if, true);
fp.get()[component]->DefineOprt("|", internal::mu_or, 1);
fp.get()[component]->DefineOprt("&", internal::mu_and, 2);
fp.get()[component]->DefineFun("int", internal::mu_int, true);
fp.get()[component]->DefineFun("ceil", internal::mu_ceil, true);
fp.get()[component]->DefineFun("cot", internal::mu_cot, true);
fp.get()[component]->DefineFun("csc", internal::mu_csc, true);
fp.get()[component]->DefineFun("floor", internal::mu_floor, true);
fp.get()[component]->DefineFun("sec", internal::mu_sec, true);
fp.get()[component]->DefineFun("log", internal::mu_log, true);
fp.get()[component]->DefineFun("pow", internal::mu_pow, true);
fp.get()[component]->DefineFun("erfc", internal::mu_erfc, true);
fp.get()[component]->DefineFun("rand_seed", internal::mu_rand_seed, true);
fp.get()[component]->DefineFun("rand", internal::mu_rand, true);
try
{
// muparser expects that functions have no
// space between the name of the function and the opening
// parenthesis. this is awkward because it is not backward
// compatible to the library we used to use before muparser
// (the fparser library) but also makes no real sense.
// consequently, in the expressions we set, remove any space
// we may find after function names
std::string transformed_expression = expressions[component];
const char *function_names[] =
{
// functions predefined by muparser
"sin",
"cos",
"tan",
"asin",
"acos",
"atan",
"sinh",
"cosh",
"tanh",
"asinh",
"acosh",
"atanh",
"atan2",
"log2",
"log10",
"log",
"ln",
"exp",
"sqrt",
"sign",
"rint",
"abs",
"min",
"max",
"sum",
"avg",
// functions we define ourselves above
"if",
"int",
"ceil",
"cot",
"csc",
"floor",
"sec",
"pow",
"erfc",
"rand",
"rand_seed"
};
for (unsigned int f=0; f<sizeof(function_names)/sizeof(function_names[0]); ++f)
{
const std::string function_name = function_names[f];
const unsigned int function_name_length = function_name.size();
std::string::size_type pos = 0;
while (true)
{
// try to find any occurrences of the function name
pos = transformed_expression.find (function_name, pos);
if (pos == std::string::npos)
break;
// replace whitespace until there no longer is any
while ((pos+function_name_length<transformed_expression.size())
&&
((transformed_expression[pos+function_name_length] == ' ')
||
(transformed_expression[pos+function_name_length] == '\t')))
transformed_expression.erase (transformed_expression.begin()+pos+function_name_length);
// move the current search position by the size of the
// actual function name
pos += function_name_length;
}
}
// now use the transformed expression
fp.get()[component]->SetExpr(transformed_expression);
}
catch (mu::ParserError &e)
{
std::cerr << "Message: <" << e.GetMsg() << ">\n";
std::cerr << "Formula: <" << e.GetExpr() << ">\n";
std::cerr << "Token: <" << e.GetToken() << ">\n";
std::cerr << "Position: <" << e.GetPos() << ">\n";
std::cerr << "Errc: <" << e.GetCode() << ">" << std::endl;
AssertThrow(false, ExcParseError(e.GetCode(), e.GetMsg().c_str()));
}
}
}
template <int dim>
void FunctionParser<dim>::initialize (const std::string &vars,
const std::string &expression,
const std::map<std::string, double> &constants,
const bool time_dependent)
{
initialize(vars, Utilities::split_string_list(expression, ';'),
constants, time_dependent);
}
template <int dim>
double FunctionParser<dim>::value (const Point<dim> &p,
const unsigned int component) const
{
Assert (initialized==true, ExcNotInitialized());
Assert (component < this->n_components,
ExcIndexRange(component, 0, this->n_components));
// initialize the parser if that hasn't happened yet on the current thread
if (fp.get().size() == 0)
init_muparser();
for (unsigned int i=0; i<dim; ++i)
vars.get()[i] = p(i);
if (dim != n_vars)
vars.get()[dim] = this->get_time();
try
{
return fp.get()[component]->Eval();
}
catch (mu::ParserError &e)
{
std::cerr << "Message: <" << e.GetMsg() << ">\n";
std::cerr << "Formula: <" << e.GetExpr() << ">\n";
std::cerr << "Token: <" << e.GetToken() << ">\n";
std::cerr << "Position: <" << e.GetPos() << ">\n";
std::cerr << "Errc: <" << e.GetCode() << ">" << std::endl;
AssertThrow(false, ExcParseError(e.GetCode(), e.GetMsg().c_str()));
return 0.0;
}
}
template <int dim>
void FunctionParser<dim>::vector_value (const Point<dim> &p,
Vector<double> &values) const
{
Assert (initialized==true, ExcNotInitialized());
Assert (values.size() == this->n_components,
ExcDimensionMismatch (values.size(), this->n_components));
// initialize the parser if that hasn't happened yet on the current thread
if (fp.get().size() == 0)
init_muparser();
for (unsigned int i=0; i<dim; ++i)
vars.get()[i] = p(i);
if (dim != n_vars)
vars.get()[dim] = this->get_time();
for (unsigned int component = 0; component < this->n_components;
++component)
values(component) = fp.get()[component]->Eval();
}
#else
template <int dim>
void
FunctionParser<dim>::initialize(const std::string &,
const std::vector<std::string> &,
const std::map<std::string, double> &,
const bool)
{
Assert(false, ExcNeedsFunctionparser());
}
template <int dim>
void
FunctionParser<dim>::initialize(const std::string &,
const std::string &,
const std::map<std::string, double> &,
const bool)
{
Assert(false, ExcNeedsFunctionparser());
}
template <int dim>
double FunctionParser<dim>::value (
const Point<dim> &, unsigned int) const
{
Assert(false, ExcNeedsFunctionparser());
return 0.;
}
template <int dim>
void FunctionParser<dim>::vector_value (
const Point<dim> &, Vector<double> &) const
{
Assert(false, ExcNeedsFunctionparser());
}
#endif
// Explicit Instantiations.
template class FunctionParser<1>;
template class FunctionParser<2>;
template class FunctionParser<3>;
DEAL_II_NAMESPACE_CLOSE
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