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// ---------------------------------------------------------------------
//
// Copyright (C) 1999 - 2018 by the deal.II authors
//
// This file is part of the deal.II library.
//
// The deal.II library is free software; you can use it, redistribute
// it, and/or modify it under the terms of the GNU Lesser General
// Public License as published by the Free Software Foundation; either
// version 2.1 of the License, or (at your option) any later version.
// The full text of the license can be found in the file LICENSE at
// the top level of the deal.II distribution.
//
// ---------------------------------------------------------------------
#include <deal.II/numerics/data_out_stack.h>
#include <deal.II/base/quadrature_lib.h>
#include <deal.II/base/memory_consumption.h>
#include <deal.II/lac/vector.h>
#include <deal.II/lac/block_vector.h>
#include <deal.II/dofs/dof_handler.h>
#include <deal.II/dofs/dof_accessor.h>
#include <deal.II/grid/tria_iterator.h>
#include <deal.II/fe/fe.h>
#include <deal.II/fe/fe_values.h>
#include <deal.II/hp/fe_values.h>
#include <deal.II/fe/mapping_q1.h>
#include <sstream>
DEAL_II_NAMESPACE_OPEN
template <int dim, int spacedim, typename DoFHandlerType>
std::size_t
DataOutStack<dim,spacedim,DoFHandlerType>::DataVector::memory_consumption () const
{
return (MemoryConsumption::memory_consumption (data) +
MemoryConsumption::memory_consumption (names));
}
template <int dim, int spacedim, typename DoFHandlerType>
void DataOutStack<dim,spacedim,DoFHandlerType>::new_parameter_value (const double p,
const double dp)
{
parameter = p;
parameter_step = dp;
// check whether the user called finish_parameter_value() at the end of the previous
// parameter step
//
// this is to prevent serious waste of memory
for (typename std::vector<DataVector>::const_iterator i=dof_data.begin();
i!=dof_data.end(); ++i)
Assert (i->data.size() == 0,
ExcDataNotCleared ());
for (typename std::vector<DataVector>::const_iterator i=cell_data.begin();
i!=cell_data.end(); ++i)
Assert (i->data.size() == 0,
ExcDataNotCleared ());
}
template <int dim, int spacedim, typename DoFHandlerType>
void DataOutStack<dim,spacedim,DoFHandlerType>::attach_dof_handler (const DoFHandlerType &dof)
{
// Check consistency of redundant
// template parameter
Assert (dim==DoFHandlerType::dimension, ExcDimensionMismatch(dim, DoFHandlerType::dimension));
dof_handler = &dof;
}
template <int dim, int spacedim, typename DoFHandlerType>
void DataOutStack<dim,spacedim,DoFHandlerType>::declare_data_vector (const std::string &name,
const VectorType vector_type)
{
std::vector<std::string> names;
names.push_back (name);
declare_data_vector (names, vector_type);
}
template <int dim, int spacedim, typename DoFHandlerType>
void DataOutStack<dim,spacedim,DoFHandlerType>::declare_data_vector (const std::vector<std::string> &names,
const VectorType vector_type)
{
// make sure this function is
// not called after some parameter
// values have already been
// processed
Assert (patches.size() == 0, ExcDataAlreadyAdded());
// also make sure that no name is
// used twice
for (std::vector<std::string>::const_iterator name=names.begin(); name!=names.end(); ++name)
{
for (typename std::vector<DataVector>::const_iterator data_set=dof_data.begin();
data_set!=dof_data.end(); ++data_set)
for (unsigned int i=0; i<data_set->names.size(); ++i)
Assert (*name != data_set->names[i], ExcNameAlreadyUsed(*name));
for (typename std::vector<DataVector>::const_iterator data_set=cell_data.begin();
data_set!=cell_data.end(); ++data_set)
for (unsigned int i=0; i<data_set->names.size(); ++i)
Assert (*name != data_set->names[i], ExcNameAlreadyUsed(*name));
};
switch (vector_type)
{
case dof_vector:
dof_data.emplace_back ();
dof_data.back().names = names;
break;
case cell_vector:
cell_data.emplace_back ();
cell_data.back().names = names;
break;
};
}
template <int dim, int spacedim, typename DoFHandlerType>
template <typename number>
void DataOutStack<dim,spacedim,DoFHandlerType>::add_data_vector (const Vector<number> &vec,
const std::string &name)
{
const unsigned int n_components = dof_handler->get_fe(0).n_components ();
std::vector<std::string> names;
// if only one component or vector
// is cell vector: we only need one
// name
if ((n_components == 1) ||
(vec.size() == dof_handler->get_triangulation().n_active_cells()))
{
names.resize (1, name);
}
else
// otherwise append _i to the
// given name
{
names.resize (n_components);
for (unsigned int i=0; i<n_components; ++i)
{
std::ostringstream namebuf;
namebuf << '_' << i;
names[i] = name + namebuf.str();
}
}
add_data_vector (vec, names);
}
template <int dim, int spacedim, typename DoFHandlerType>
template <typename number>
void DataOutStack<dim,spacedim,DoFHandlerType>::add_data_vector (const Vector<number> &vec,
const std::vector<std::string> &names)
{
Assert (dof_handler != nullptr,
Exceptions::DataOutImplementation::ExcNoDoFHandlerSelected ());
// either cell data and one name,
// or dof data and n_components names
Assert (((vec.size() == dof_handler->get_triangulation().n_active_cells()) &&
(names.size() == 1))
||
((vec.size() == dof_handler->n_dofs()) &&
(names.size() == dof_handler->get_fe(0).n_components())),
Exceptions::DataOutImplementation::ExcInvalidNumberOfNames (names.size(),
dof_handler->get_fe(0).n_components()));
for (unsigned int i=0; i<names.size(); ++i)
Assert (names[i].find_first_not_of("abcdefghijklmnopqrstuvwxyz"
"ABCDEFGHIJKLMNOPQRSTUVWXYZ"
"0123456789_<>()") == std::string::npos,
Exceptions::DataOutImplementation::ExcInvalidCharacter (names[i],
names[i].find_first_not_of("abcdefghijklmnopqrstuvwxyz"
"ABCDEFGHIJKLMNOPQRSTUVWXYZ"
"0123456789_<>()")));
if (vec.size() == dof_handler->n_dofs())
{
typename std::vector<DataVector>::iterator data_vector=dof_data.begin();
for (; data_vector!=dof_data.end(); ++data_vector)
if (data_vector->names == names)
{
data_vector->data.reinit (vec.size());
std::copy (vec.begin(), vec.end(),
data_vector->data.begin());
return;
};
// ok. not found. there is a
// slight chance that
// n_dofs==n_cells, so only
// bomb out if the next if
// statement will not be run
if (dof_handler->n_dofs() != dof_handler->get_triangulation().n_active_cells())
Assert (false, ExcVectorNotDeclared (names[0]));
}
// search cell data
if ((vec.size() != dof_handler->n_dofs()) ||
(dof_handler->n_dofs() == dof_handler->get_triangulation().n_active_cells()))
{
typename std::vector<DataVector>::iterator data_vector=cell_data.begin();
for (; data_vector!=cell_data.end(); ++data_vector)
if (data_vector->names == names)
{
data_vector->data.reinit (vec.size());
std::copy (vec.begin(), vec.end(),
data_vector->data.begin());
return;
};
Assert (false, ExcVectorNotDeclared (names[0]));
};
// we have either return or Assert
// statements above, so shouldn't
// get here!
Assert (false, ExcInternalError());
}
template <int dim, int spacedim, typename DoFHandlerType>
void DataOutStack<dim,spacedim,DoFHandlerType>::build_patches (const unsigned int nnnn_subdivisions)
{
// this is mostly copied from the
// DataOut class
unsigned int n_subdivisions = (nnnn_subdivisions != 0)
? nnnn_subdivisions
: this->default_subdivisions;
Assert (n_subdivisions >= 1,
Exceptions::DataOutImplementation::ExcInvalidNumberOfSubdivisions(n_subdivisions));
Assert (dof_handler != nullptr,
Exceptions::DataOutImplementation::ExcNoDoFHandlerSelected());
this->validate_dataset_names();
const unsigned int n_components = dof_handler->get_fe(0).n_components();
const unsigned int n_datasets = dof_data.size() * n_components +
cell_data.size();
// first count the cells we want to
// create patches of and make sure
// there is enough memory for that
unsigned int n_patches = 0;
for (typename DoFHandlerType::active_cell_iterator
cell=dof_handler->begin_active();
cell != dof_handler->end(); ++cell)
++n_patches;
// before we start the loop:
// create a quadrature rule that
// actually has the points on this
// patch, and an object that
// extracts the data on each
// cell to these points
QTrapez<1> q_trapez;
QIterated<dim> patch_points (q_trapez, n_subdivisions);
// create collection objects from
// single quadratures,
// and finite elements. if we have
// an hp DoFHandler,
// dof_handler.get_fe() returns a
// collection of which we do a
// shallow copy instead
const hp::QCollection<dim> q_collection (patch_points);
const hp::FECollection<dim> &fe_collection = dof_handler->get_fe_collection();
hp::FEValues<dim> x_fe_patch_values (fe_collection, q_collection,
update_values);
const unsigned int n_q_points = patch_points.size();
std::vector<double> patch_values (n_q_points);
std::vector<Vector<double> > patch_values_system (n_q_points,
Vector<double>(n_components));
// add the required number of
// patches. first initialize a template
// patch with n_q_points (in the plane
// of the cells) times n_subdivisions+1 (in
// the time direction) points
dealii::DataOutBase::Patch<dim+1,dim+1> default_patch;
default_patch.n_subdivisions = n_subdivisions;
default_patch.data.reinit (n_datasets, n_q_points*(n_subdivisions+1));
patches.insert (patches.end(), n_patches, default_patch);
// now loop over all cells and
// actually create the patches
typename std::vector< dealii::DataOutBase::Patch<dim+1,dim+1> >::iterator
patch = patches.begin() + (patches.size()-n_patches);
unsigned int cell_number = 0;
for (typename DoFHandlerType::active_cell_iterator cell=dof_handler->begin_active();
cell != dof_handler->end(); ++cell, ++patch, ++cell_number)
{
Assert (cell->is_locally_owned(),
ExcNotImplemented());
Assert (patch != patches.end(), ExcInternalError());
// first fill in the vertices of the patch
// Patches are organized such
// that the parameter direction
// is the last
// coordinate. Thus, vertices
// are two copies of the space
// patch, one at parameter-step
// and one at parameter.
switch (dim)
{
case 1:
patch->vertices[0] = Point<dim+1>(cell->vertex(0)(0),
parameter-parameter_step);
patch->vertices[1] = Point<dim+1>(cell->vertex(1)(0),
parameter-parameter_step);
patch->vertices[2] = Point<dim+1>(cell->vertex(0)(0),
parameter);
patch->vertices[3] = Point<dim+1>(cell->vertex(1)(0),
parameter);
break;
case 2:
patch->vertices[0] = Point<dim+1>(cell->vertex(0)(0),
cell->vertex(0)(1),
parameter-parameter_step);
patch->vertices[1] = Point<dim+1>(cell->vertex(1)(0),
cell->vertex(1)(1),
parameter-parameter_step);
patch->vertices[2] = Point<dim+1>(cell->vertex(2)(0),
cell->vertex(2)(1),
parameter-parameter_step);
patch->vertices[3] = Point<dim+1>(cell->vertex(3)(0),
cell->vertex(3)(1),
parameter-parameter_step);
patch->vertices[4] = Point<dim+1>(cell->vertex(0)(0),
cell->vertex(0)(1),
parameter);
patch->vertices[5] = Point<dim+1>(cell->vertex(1)(0),
cell->vertex(1)(1),
parameter);
patch->vertices[6] = Point<dim+1>(cell->vertex(2)(0),
cell->vertex(2)(1),
parameter);
patch->vertices[7] = Point<dim+1>(cell->vertex(3)(0),
cell->vertex(3)(1),
parameter);
break;
default:
Assert (false, ExcNotImplemented());
};
// now fill in the data values.
// note that the required order is
// with highest coordinate running
// fastest, we need to enter each
// value (n_subdivisions+1) times
// in succession
if (n_datasets > 0)
{
x_fe_patch_values.reinit (cell);
const FEValues<dim> &fe_patch_values
= x_fe_patch_values.get_present_fe_values ();
// first fill dof_data
for (unsigned int dataset=0; dataset<dof_data.size(); ++dataset)
{
if (n_components == 1)
{
fe_patch_values.get_function_values (dof_data[dataset].data,
patch_values);
for (unsigned int i=0; i<n_subdivisions+1; ++i)
for (unsigned int q=0; q<n_q_points; ++q)
patch->data(dataset,q+n_q_points*i) = patch_values[q];
}
else
// system of components
{
fe_patch_values.get_function_values (dof_data[dataset].data,
patch_values_system);
for (unsigned int component=0; component<n_components; ++component)
for (unsigned int i=0; i<n_subdivisions+1; ++i)
for (unsigned int q=0; q<n_q_points; ++q)
patch->data(dataset*n_components+component,
q+n_q_points*i)
= patch_values_system[q](component);
}
}
// then do the cell data
for (unsigned int dataset=0; dataset<cell_data.size(); ++dataset)
{
const double value = cell_data[dataset].data(cell_number);
for (unsigned int q=0; q<n_q_points; ++q)
for (unsigned int i=0; i<n_subdivisions+1; ++i)
patch->data(dataset+dof_data.size()*n_components,
q*(n_subdivisions+1)+i) = value;
}
}
}
}
template <int dim, int spacedim, typename DoFHandlerType>
void DataOutStack<dim,spacedim,DoFHandlerType>::finish_parameter_value ()
{
// release lock on dof handler
dof_handler = nullptr;
for (typename std::vector<DataVector>::iterator i=dof_data.begin();
i!=dof_data.end(); ++i)
i->data.reinit (0);
for (typename std::vector<DataVector>::iterator i=cell_data.begin();
i!=cell_data.end(); ++i)
i->data.reinit (0);
}
template <int dim, int spacedim, typename DoFHandlerType>
std::size_t
DataOutStack<dim,spacedim,DoFHandlerType>::memory_consumption () const
{
return (DataOutInterface<dim+1>::memory_consumption () +
MemoryConsumption::memory_consumption (parameter) +
MemoryConsumption::memory_consumption (parameter_step) +
MemoryConsumption::memory_consumption (dof_handler) +
MemoryConsumption::memory_consumption (patches) +
MemoryConsumption::memory_consumption (dof_data) +
MemoryConsumption::memory_consumption (cell_data));
}
template <int dim, int spacedim, typename DoFHandlerType>
const std::vector< dealii::DataOutBase::Patch<dim+1,dim+1> > &
DataOutStack<dim,spacedim,DoFHandlerType>::get_patches () const
{
return patches;
}
template <int dim, int spacedim, typename DoFHandlerType>
std::vector<std::string> DataOutStack<dim,spacedim,DoFHandlerType>::get_dataset_names () const
{
std::vector<std::string> names;
for (typename std::vector<DataVector>::const_iterator dataset=dof_data.begin();
dataset!=dof_data.end(); ++dataset)
names.insert (names.end(), dataset->names.begin(), dataset->names.end());
for (typename std::vector<DataVector>::const_iterator dataset=cell_data.begin();
dataset!=cell_data.end(); ++dataset)
names.insert (names.end(), dataset->names.begin(), dataset->names.end());
return names;
}
// explicit instantiations
#include "data_out_stack.inst"
DEAL_II_NAMESPACE_CLOSE
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