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// ------------------------------------------------------------------------
//
// SPDX-License-Identifier: LGPL-2.1-or-later
// Copyright (C) 2009 - 2025 by the deal.II authors
//
// This file is part of the deal.II library.
//
// Part of the source code is dual licensed under Apache-2.0 WITH
// LLVM-exception OR LGPL-2.1-or-later. Detailed license information
// governing the source code and code contributions can be found in
// LICENSE.md and CONTRIBUTING.md at the top level directory of deal.II.
//
// ------------------------------------------------------------------------
#include <deal.II/base/index_set.h>
#include <deal.II/base/memory_consumption.h>
#include <deal.II/base/mpi.h>
#include <deal.II/lac/exceptions.h>
#include <deal.II/lac/trilinos_tpetra_types.h>
#include <boost/container/small_vector.hpp>
#include <vector>
#ifdef DEAL_II_WITH_TRILINOS
DEAL_II_DISABLE_EXTRA_DIAGNOSTICS
# ifdef DEAL_II_WITH_MPI
# include <Epetra_MpiComm.h>
# endif
# include <Epetra_Map.h>
# include <Epetra_SerialComm.h>
# ifdef DEAL_II_TRILINOS_WITH_TPETRA
# include <Tpetra_Map.hpp>
# endif
DEAL_II_ENABLE_EXTRA_DIAGNOSTICS
#endif
DEAL_II_NAMESPACE_OPEN
#ifdef DEAL_II_WITH_TRILINOS
# ifdef DEAL_II_TRILINOS_WITH_TPETRA
template <typename NodeType>
IndexSet::IndexSet(
const Teuchos::RCP<
const Tpetra::Map<int, types::signed_global_dof_index, NodeType>> &map)
: is_compressed(true)
, index_space_size(1 + map->getMaxAllGlobalIndex())
, largest_range(numbers::invalid_unsigned_int)
{
Assert(map->getMinAllGlobalIndex() == 0,
ExcMessage(
"The Tpetra::Map does not contain the global index 0, "
"which means some entries are not present on any processor."));
// For a contiguous map, we do not need to go through the whole data...
if (map->isContiguous())
add_range(size_type(map->getMinGlobalIndex()),
size_type(map->getMaxGlobalIndex() + 1));
else
{
# if DEAL_II_TRILINOS_VERSION_GTE(13, 4, 0)
const size_type n_indices = map->getLocalNumElements();
# else
const size_type n_indices = map->getNodeNumElements();
# endif
const types::signed_global_dof_index *indices =
map->getMyGlobalIndices().data();
add_indices(indices, indices + n_indices);
}
compress();
}
# endif // DEAL_II_TRILINOS_WITH_TPETRA
// the 64-bit path uses a few different names, so put that into a separate
// implementation
# ifdef DEAL_II_WITH_64BIT_INDICES
IndexSet::IndexSet(const Epetra_BlockMap &map)
: is_compressed(true)
, index_space_size(1 + map.MaxAllGID64())
, largest_range(numbers::invalid_unsigned_int)
{
Assert(map.MinAllGID64() == 0,
ExcMessage(
"The Epetra_BlockMap does not contain the global index 0, "
"which means some entries are not present on any processor."));
// For a contiguous map, we do not need to go through the whole data...
if (map.LinearMap())
add_range(size_type(map.MinMyGID64()), size_type(map.MaxMyGID64() + 1));
else
{
const size_type n_indices = map.NumMyElements();
size_type *indices =
reinterpret_cast<size_type *>(map.MyGlobalElements64());
add_indices(indices, indices + n_indices);
}
compress();
}
# else
// this is the standard 32-bit implementation
IndexSet::IndexSet(const Epetra_BlockMap &map)
: is_compressed(true)
, index_space_size(1 + map.MaxAllGID())
, largest_range(numbers::invalid_unsigned_int)
{
Assert(map.MinAllGID() == 0,
ExcMessage(
"The Epetra_BlockMap does not contain the global index 0, "
"which means some entries are not present on any processor."));
// For a contiguous map, we do not need to go through the whole data...
if (map.LinearMap())
add_range(size_type(map.MinMyGID()), size_type(map.MaxMyGID() + 1));
else
{
const size_type n_indices = map.NumMyElements();
unsigned int *indices =
reinterpret_cast<unsigned int *>(map.MyGlobalElements());
add_indices(indices, indices + n_indices);
}
compress();
}
# endif
#endif // ifdef DEAL_II_WITH_TRILINOS
void
IndexSet::do_compress() const
{
{
// we will, in the following, modify mutable variables. this can only
// work in multithreaded applications if we lock the data structures
// via a mutex, so that users can call 'const' functions from threads
// in parallel (and these 'const' functions can then call compress()
// which itself calls the current function)
std::lock_guard<std::mutex> lock(compress_mutex);
// see if any of the contiguous ranges can be merged. do not use
// std::vector::erase in-place as it is quadratic in the number of
// ranges. since the ranges are sorted by their first index, determining
// overlap isn't all that hard
std::vector<Range>::iterator store = ranges.begin();
for (std::vector<Range>::iterator i = ranges.begin(); i != ranges.end();)
{
std::vector<Range>::iterator next = i;
++next;
size_type first_index = i->begin;
size_type last_index = i->end;
// see if we can merge any of the following ranges
while (next != ranges.end() && (next->begin <= last_index))
{
last_index = std::max(last_index, next->end);
++next;
}
i = next;
// store the new range in the slot we last occupied
*store = Range(first_index, last_index);
++store;
}
// use a compact array with exactly the right amount of storage
if (store != ranges.end())
{
std::vector<Range> new_ranges(ranges.begin(), store);
ranges.swap(new_ranges);
}
// now compute indices within set and the range with most elements
size_type next_index = 0, largest_range_size = 0;
for (std::vector<Range>::iterator i = ranges.begin(); i != ranges.end();
++i)
{
Assert(i->begin < i->end, ExcInternalError());
i->nth_index_in_set = next_index;
next_index += (i->end - i->begin);
if (i->end - i->begin > largest_range_size)
{
largest_range_size = i->end - i->begin;
largest_range = i - ranges.begin();
}
}
is_compressed = true;
// check that next_index is correct. needs to be after the previous
// statement because we otherwise will get into an endless loop
Assert(next_index == n_elements(), ExcInternalError());
}
if constexpr (running_in_debug_mode())
{
// A consistency check: We should only ever have added indices
// that are within the range of the index set. Instead of doing
// this in every one of the many functions that add indices,
// do this in the current, central location
for (const auto &range : ranges)
Assert((range.begin < index_space_size) &&
(range.end <= index_space_size),
ExcMessage(
"In the process of creating the current IndexSet "
"object, you added indices beyond the size of the index "
"space. Specifically, you added elements that form the "
"range [" +
std::to_string(range.begin) + "," + std::to_string(range.end) +
"), but the size of the index space is only " +
std::to_string(index_space_size) + "."));
}
}
#ifndef DOXYGEN
IndexSet
IndexSet::operator&(const IndexSet &is) const
{
Assert(size() == is.size(), ExcDimensionMismatch(size(), is.size()));
compress();
is.compress();
std::vector<Range>::const_iterator r1 = ranges.begin(),
r2 = is.ranges.begin();
IndexSet result(size());
while ((r1 != ranges.end()) && (r2 != is.ranges.end()))
{
// if r1 and r2 do not overlap at all, then move the pointer that sits
// to the left of the other up by one
if (r1->end <= r2->begin)
++r1;
else if (r2->end <= r1->begin)
++r2;
else
{
// the ranges must overlap somehow
Assert(((r1->begin <= r2->begin) && (r1->end > r2->begin)) ||
((r2->begin <= r1->begin) && (r2->end > r1->begin)),
ExcInternalError());
// add the overlapping range to the result
result.add_range(std::max(r1->begin, r2->begin),
std::min(r1->end, r2->end));
// now move that iterator that ends earlier one up. note that it has
// to be this one because a subsequent range may still have a chance
// of overlapping with the range that ends later
if (r1->end <= r2->end)
++r1;
else
++r2;
}
}
result.compress();
return result;
}
#endif
IndexSet
IndexSet::get_view(const size_type begin, const size_type end) const
{
Assert(begin <= end,
ExcMessage("End index needs to be larger or equal to begin index!"));
Assert(end <= size(),
ExcMessage("You are asking for a view into an IndexSet object "
"that would cover the sub-range [" +
std::to_string(begin) + ',' + std::to_string(end) +
"). But this is not a subset of the range "
"of the current object, which is [0," +
std::to_string(size()) + ")."));
IndexSet result(end - begin);
std::vector<Range>::const_iterator r1 = ranges.begin();
while (r1 != ranges.end())
{
if ((r1->end > begin) && (r1->begin < end))
{
result.add_range(std::max(r1->begin, begin) - begin,
std::min(r1->end, end) - begin);
}
else if (r1->begin >= end)
break;
++r1;
}
result.compress();
return result;
}
IndexSet
IndexSet::get_view(const IndexSet &mask) const
{
Assert(size() == mask.size(),
ExcMessage("The mask must have the same size index space "
"as the index set it is applied to."));
// If 'other' is an empty set, then the view is also empty:
if (mask == IndexSet())
return {};
// For everything, it is more efficient to work on compressed sets:
compress();
mask.compress();
// If 'other' has a single range, then we can just defer to the
// previous function
if (mask.ranges.size() == 1)
return get_view(mask.ranges[0].begin, mask.ranges[0].end);
// For the general case where the mask is an arbitrary set,
// the situation is slightly more complicated. We need to walk
// the ranges of the two index sets in parallel and search for
// overlaps, and then appropriately shift
// we save all new ranges to our IndexSet in an temporary vector and
// add all of them in one go at the end.
std::vector<Range> new_ranges;
std::vector<Range>::iterator own_it = ranges.begin();
std::vector<Range>::iterator mask_it = mask.ranges.begin();
while ((own_it != ranges.end()) && (mask_it != mask.ranges.end()))
{
// If our own range lies completely ahead of the current
// range in the mask, move forward and start the loop body
// anew. If this was the last range, the 'while' loop above
// will terminate, so we don't have to check for end iterators
if (own_it->end <= mask_it->begin)
{
++own_it;
continue;
}
// Do the same if the current mask range lies completely ahead of
// the current range of the this object:
if (mask_it->end <= own_it->begin)
{
++mask_it;
continue;
}
// Now own_it and other_it overlap. Check that that is true by
// enumerating the cases that can happen. This is
// surprisingly tricky because the two intervals can intersect in
// a number of different ways, but there really are only the four
// following possibilities:
// Case 1: our interval overlaps the left end of the other interval
//
// So we need to add the elements from the first element of the mask's
// interval to the end of our own interval. But we need to shift the
// indices so that they correspond to the how many'th element within the
// mask this is; fortunately (because we compressed the mask), this
// is recorded in the mask's ranges.
if ((own_it->begin <= mask_it->begin) && (own_it->end <= mask_it->end))
{
new_ranges.emplace_back(mask_it->begin - mask_it->nth_index_in_set,
own_it->end - mask_it->nth_index_in_set);
}
else
// Case 2:our interval overlaps the tail end of the other interval
if ((mask_it->begin <= own_it->begin) && (mask_it->end <= own_it->end))
{
const size_type offset_within_mask_interval =
own_it->begin - mask_it->begin;
new_ranges.emplace_back(mask_it->nth_index_in_set +
offset_within_mask_interval,
mask_it->nth_index_in_set +
(mask_it->end - mask_it->begin));
}
else
// Case 3: Our own interval completely encloses the other interval
if ((own_it->begin <= mask_it->begin) &&
(own_it->end >= mask_it->end))
{
new_ranges.emplace_back(mask_it->begin -
mask_it->nth_index_in_set,
mask_it->end - mask_it->nth_index_in_set);
}
else
// Case 3: The other interval completely encloses our own interval
if ((mask_it->begin <= own_it->begin) &&
(mask_it->end >= own_it->end))
{
const size_type offset_within_mask_interval =
own_it->begin - mask_it->begin;
new_ranges.emplace_back(mask_it->nth_index_in_set +
offset_within_mask_interval,
mask_it->nth_index_in_set +
offset_within_mask_interval +
(own_it->end - own_it->begin));
}
else
DEAL_II_ASSERT_UNREACHABLE();
// We considered the overlap of these two intervals. It may of course
// be that one of them overlaps with another one, but that can only
// be the case for the interval that extends further to the right. So
// we can safely move on from the interval that terminates earlier:
if (own_it->end < mask_it->end)
++own_it;
else if (mask_it->end < own_it->end)
++mask_it;
else
{
// The intervals ended at the same point. We can move on from both.
// (The algorithm would also work if we only moved on from one,
// but we can micro-optimize here without too much effort.)
++own_it;
++mask_it;
}
}
// Now turn the ranges of overlap we have accumulated into an IndexSet in
// its own right:
IndexSet result(mask.n_elements());
for (const auto &range : new_ranges)
result.add_range(range.begin, range.end);
result.compress();
return result;
}
std::vector<IndexSet>
IndexSet::split_by_block(
const std::vector<types::global_dof_index> &n_indices_per_block) const
{
std::vector<IndexSet> partitioned;
const unsigned int n_blocks = n_indices_per_block.size();
partitioned.reserve(n_blocks);
types::global_dof_index start = 0;
for (const auto n_block_indices : n_indices_per_block)
{
partitioned.push_back(this->get_view(start, start + n_block_indices));
start += n_block_indices;
}
if constexpr (running_in_debug_mode())
{
types::global_dof_index sum = 0;
for (const auto &partition : partitioned)
{
sum += partition.size();
}
AssertDimension(sum, this->size());
}
return partitioned;
}
void
IndexSet::subtract_set(const IndexSet &other)
{
compress();
other.compress();
is_compressed = false;
// we save all new ranges to our IndexSet in an temporary vector and
// add all of them in one go at the end.
std::vector<Range> new_ranges;
std::vector<Range>::iterator own_it = ranges.begin();
std::vector<Range>::iterator other_it = other.ranges.begin();
while (own_it != ranges.end() && other_it != other.ranges.end())
{
// advance own iterator until we get an overlap
if (own_it->end <= other_it->begin)
{
new_ranges.push_back(*own_it);
++own_it;
continue;
}
// we are done with other_it, so advance
if (own_it->begin >= other_it->end)
{
++other_it;
continue;
}
// Now own_it and other_it overlap. First save the part of own_it that
// is before other_it (if not empty).
if (own_it->begin < other_it->begin)
{
Range r(own_it->begin, other_it->begin);
r.nth_index_in_set = 0; // fix warning of unused variable
new_ranges.push_back(r);
}
// change own_it to the sub range behind other_it. Do not delete own_it
// in any case. As removal would invalidate iterators, we just shrink
// the range to an empty one.
own_it->begin = other_it->end;
if (own_it->begin > own_it->end)
{
own_it->begin = own_it->end;
++own_it;
}
// continue without advancing iterators, the right one will be advanced
// next.
}
// make sure to take over the remaining ranges
for (; own_it != ranges.end(); ++own_it)
new_ranges.push_back(*own_it);
ranges.clear();
// done, now add the temporary ranges
const std::vector<Range>::iterator end = new_ranges.end();
for (std::vector<Range>::iterator it = new_ranges.begin(); it != end; ++it)
add_range(it->begin, it->end);
compress();
}
IndexSet
IndexSet::tensor_product(const IndexSet &other) const
{
IndexSet set(this->size() * other.size());
for (const auto el : *this)
set.add_indices(other, el * other.size());
set.compress();
return set;
}
IndexSet::size_type
IndexSet::pop_back()
{
Assert(is_empty() == false,
ExcMessage(
"pop_back() failed, because this IndexSet contains no entries."));
const size_type index = ranges.back().end - 1;
--ranges.back().end;
if (ranges.back().begin == ranges.back().end)
ranges.pop_back();
return index;
}
IndexSet::size_type
IndexSet::pop_front()
{
Assert(is_empty() == false,
ExcMessage(
"pop_front() failed, because this IndexSet contains no entries."));
const size_type index = ranges.front().begin;
++ranges.front().begin;
if (ranges.front().begin == ranges.front().end)
ranges.erase(ranges.begin());
// We have to set this in any case, because nth_index_in_set is no longer
// up to date for all but the first range
is_compressed = false;
return index;
}
void
IndexSet::add_range_lower_bound(const Range &new_range)
{
// if the inserted range is already within the range we find by lower_bound,
// there is no need to do anything; we do not try to be clever here and
// leave all other work to compress().
const auto insert_position =
Utilities::lower_bound(ranges.begin(), ranges.end(), new_range);
if (insert_position == ranges.end() ||
insert_position->begin > new_range.begin ||
insert_position->end < new_range.end)
ranges.insert(insert_position, new_range);
}
void
IndexSet::add_ranges_internal(
boost::container::small_vector<std::pair<size_type, size_type>, 200>
&tmp_ranges,
const bool ranges_are_sorted)
{
if (!ranges_are_sorted)
std::sort(tmp_ranges.begin(), tmp_ranges.end());
// if we have many ranges, we first construct a temporary index set (where
// we add ranges in a consecutive way, so fast), otherwise, we work with
// add_range(). the number 9 is chosen heuristically given the fact that
// there are typically up to 8 independent ranges when adding the degrees of
// freedom on a 3d cell or 9 when adding degrees of freedom of faces. if
// doing cell-by-cell additions, we want to avoid repeated calls to
// IndexSet::compress() which gets called upon merging two index sets, so we
// want to be in the other branch then.
if (tmp_ranges.size() > 9)
{
IndexSet tmp_set(size());
tmp_set.ranges.reserve(tmp_ranges.size());
for (const auto &i : tmp_ranges)
tmp_set.add_range(i.first, i.second);
// Case if we have zero or just one range: Add into the other set with
// its indices, as that is cheaper
if (this->ranges.size() <= 1)
{
if (this->ranges.size() == 1)
tmp_set.add_range(ranges[0].begin, ranges[0].end);
std::swap(*this, tmp_set);
}
else
this->add_indices(tmp_set);
}
else
for (const auto &i : tmp_ranges)
add_range(i.first, i.second);
}
void
IndexSet::add_indices(const IndexSet &other, const size_type offset)
{
if ((this == &other) && (offset == 0))
return;
if (other.ranges.size() != 0)
{
AssertIndexRange(other.ranges.back().end - 1, index_space_size);
}
compress();
other.compress();
std::vector<Range>::const_iterator r1 = ranges.begin(),
r2 = other.ranges.begin();
std::vector<Range> new_ranges;
// just get the start and end of the ranges right in this method, everything
// else will be done in compress()
while (r1 != ranges.end() || r2 != other.ranges.end())
{
// the two ranges do not overlap or we are at the end of one of the
// ranges
if (r2 == other.ranges.end() ||
(r1 != ranges.end() && r1->end < (r2->begin + offset)))
{
new_ranges.push_back(*r1);
++r1;
}
else if (r1 == ranges.end() || (r2->end + offset) < r1->begin)
{
new_ranges.emplace_back(r2->begin + offset, r2->end + offset);
++r2;
}
else
{
// ok, we do overlap, so just take the combination of the current
// range (do not bother to merge with subsequent ranges)
Range next(std::min(r1->begin, r2->begin + offset),
std::max(r1->end, r2->end + offset));
new_ranges.push_back(next);
++r1;
++r2;
}
}
ranges.swap(new_ranges);
is_compressed = false;
compress();
}
bool
IndexSet::is_subset_of(const IndexSet &other) const
{
Assert(size() == other.size(),
ExcMessage("One index set can only be a subset of another if they "
"describe index spaces of the same size. The ones in "
"question here have sizes " +
std::to_string(size()) + " and " +
std::to_string(other.size()) + "."));
// See whether there are indices in the current set that are not in 'other'.
// If so, then this is clearly not a subset of 'other'.
IndexSet A_minus_B = *this;
A_minus_B.subtract_set(other);
if (A_minus_B.n_elements() > 0)
return false;
else
// Else, every index in 'this' is also in 'other', since we ended up
// with an empty set upon subtraction. This means that we have a subset:
return true;
}
void
IndexSet::write(std::ostream &out) const
{
compress();
out << size() << " ";
out << ranges.size() << std::endl;
std::vector<Range>::const_iterator r = ranges.begin();
for (; r != ranges.end(); ++r)
{
out << r->begin << " " << r->end << std::endl;
}
}
void
IndexSet::read(std::istream &in)
{
AssertThrow(in.fail() == false, ExcIO());
size_type s;
unsigned int n_ranges;
in >> s >> n_ranges;
ranges.clear();
set_size(s);
for (unsigned int i = 0; i < n_ranges; ++i)
{
AssertThrow(in.fail() == false, ExcIO());
size_type b, e;
in >> b >> e;
add_range(b, e);
}
}
void
IndexSet::block_write(std::ostream &out) const
{
AssertThrow(out.fail() == false, ExcIO());
out.write(reinterpret_cast<const char *>(&index_space_size),
sizeof(index_space_size));
std::size_t n_ranges = ranges.size();
out.write(reinterpret_cast<const char *>(&n_ranges), sizeof(n_ranges));
if (ranges.empty() == false)
out.write(reinterpret_cast<const char *>(&*ranges.begin()),
ranges.size() * sizeof(Range));
AssertThrow(out.fail() == false, ExcIO());
}
void
IndexSet::block_read(std::istream &in)
{
size_type size;
std::size_t n_ranges;
in.read(reinterpret_cast<char *>(&size), sizeof(size));
in.read(reinterpret_cast<char *>(&n_ranges), sizeof(n_ranges));
// we have to clear ranges first
ranges.clear();
set_size(size);
ranges.resize(n_ranges, Range(0, 0));
if (n_ranges != 0u)
in.read(reinterpret_cast<char *>(&*ranges.begin()),
ranges.size() * sizeof(Range));
do_compress(); // needed so that largest_range can be recomputed
}
bool
IndexSet::is_element_binary_search(const size_type index) const
{
// get the element after which we would have to insert a range that
// consists of all elements from this element to the end of the index
// range plus one. after this call we know that if p!=end() then
// p->begin<=index unless there is no such range at all
//
// if the searched for element is an element of this range, then we're
// done. otherwise, the element can't be in one of the following ranges
// because otherwise p would be a different iterator
//
// since we already know the position relative to the largest range (we
// called compress!), we can perform the binary search on ranges with
// lower/higher number compared to the largest range
std::vector<Range>::const_iterator p = std::upper_bound(
ranges.begin() +
(index < ranges[largest_range].begin ? 0 : largest_range + 1),
index < ranges[largest_range].begin ? ranges.begin() + largest_range :
ranges.end(),
Range(index, size() + 1));
if (p == ranges.begin())
return ((index >= p->begin) && (index < p->end));
Assert((p == ranges.end()) || (p->begin > index), ExcInternalError());
// now move to that previous range
--p;
Assert(p->begin <= index, ExcInternalError());
return (p->end > index);
}
IndexSet::size_type
IndexSet::nth_index_in_set_binary_search(const size_type n) const
{
// find out which chunk the local index n belongs to by using a binary
// search. the comparator is based on the end of the ranges.
Range r(n, n + 1);
r.nth_index_in_set = n;
const std::vector<Range>::const_iterator p = Utilities::lower_bound(
ranges.begin(), ranges.end(), r, Range::nth_index_compare);
Assert(p != ranges.end(), ExcInternalError());
return p->begin + (n - p->nth_index_in_set);
}
IndexSet::size_type
IndexSet::index_within_set_binary_search(const size_type n) const
{
// we could try to use the main range for splitting up the search range, but
// since we only come here when the largest range did not contain the index,
// there is little gain from doing a first step manually.
Range r(n, n);
std::vector<Range>::const_iterator p =
Utilities::lower_bound(ranges.begin(), ranges.end(), r, Range::end_compare);
// if n is not in this set
if (p == ranges.end() || p->end == n || p->begin > n)
return numbers::invalid_dof_index;
Assert(p != ranges.end(), ExcInternalError());
Assert(p->begin <= n, ExcInternalError());
Assert(n < p->end, ExcInternalError());
return (n - p->begin) + p->nth_index_in_set;
}
IndexSet::ElementIterator
IndexSet::at(const size_type global_index) const
{
compress();
AssertIndexRange(global_index, size());
if (ranges.empty())
return end();
std::vector<Range>::const_iterator main_range =
ranges.begin() + largest_range;
Range r(global_index, global_index + 1);
// This optimization makes the bounds for lower_bound smaller by checking
// the largest range first.
std::vector<Range>::const_iterator range_begin, range_end;
if (global_index < main_range->begin)
{
range_begin = ranges.begin();
range_end = main_range;
}
else
{
range_begin = main_range;
range_end = ranges.end();
}
// This will give us the first range p=[a,b[ with b>=global_index using
// a binary search
const std::vector<Range>::const_iterator p =
Utilities::lower_bound(range_begin, range_end, r, Range::end_compare);
// We couldn't find a range, which means we have no range that contains
// global_index and also no range behind it, meaning we need to return end().
if (p == ranges.end())
return end();
// Finally, we can have two cases: Either global_index is not in [a,b[,
// which means we need to return an iterator to a because global_index, ...,
// a-1 is not in the IndexSet (if branch). Alternatively, global_index is in
// [a,b[ and we will return an iterator pointing directly at global_index
// (else branch).
if (global_index < p->begin)
return {this, static_cast<size_type>(p - ranges.begin()), p->begin};
else
return {this, static_cast<size_type>(p - ranges.begin()), global_index};
}
std::vector<IndexSet::size_type>
IndexSet::get_index_vector() const
{
compress();
std::vector<size_type> indices;
indices.reserve(n_elements());
for (const auto &range : ranges)
for (size_type entry = range.begin; entry < range.end; ++entry)
indices.push_back(entry);
Assert(indices.size() == n_elements(), ExcInternalError());
return indices;
}
void
IndexSet::fill_index_vector(std::vector<size_type> &indices) const
{
indices = get_index_vector();
}
#ifdef DEAL_II_WITH_TRILINOS
# ifdef DEAL_II_TRILINOS_WITH_TPETRA
template <typename NodeType>
Tpetra::Map<int, types::signed_global_dof_index, NodeType>
IndexSet::make_tpetra_map(const MPI_Comm communicator,
const bool overlapping) const
{
return *make_tpetra_map_rcp<NodeType>(communicator, overlapping);
}
template <typename NodeType>
Teuchos::RCP<Tpetra::Map<int, types::signed_global_dof_index, NodeType>>
IndexSet::make_tpetra_map_rcp(const MPI_Comm communicator,
const bool overlapping) const
{
compress();
(void)communicator;
if constexpr (running_in_debug_mode())
{
if (!overlapping)
{
const size_type n_global_elements =
Utilities::MPI::sum(n_elements(), communicator);
Assert(n_global_elements == size(),
ExcMessage("You are trying to create an Tpetra::Map object "
"that partitions elements of an index set "
"between processors. However, the union of the "
"index sets on different processors does not "
"contain all indices exactly once: the sum of "
"the number of entries the various processors "
"want to store locally is " +
std::to_string(n_global_elements) +
" whereas the total size of the object to be "
"allocated is " +
std::to_string(size()) +
". In other words, there are "
"either indices that are not spoken for "
"by any processor, or there are indices that are "
"claimed by multiple processors."));
}
}
// Find out if the IndexSet is ascending and 1:1. This corresponds to a
// linear Tpetra::Map. Overlapping IndexSets are never 1:1.
const bool linear =
overlapping ? false : is_ascending_and_one_to_one(communicator);
if (linear)
return Utilities::Trilinos::internal::make_rcp<
Tpetra::Map<int, types::signed_global_dof_index, NodeType>>(
size(),
n_elements(),
0,
# ifdef DEAL_II_WITH_MPI
Utilities::Trilinos::internal::make_rcp<Teuchos::MpiComm<int>>(
communicator)
# else
Utilities::Trilinos::internal::make_rcp<Teuchos::Comm<int>>()
# endif // DEAL_II_WITH_MPI
);
else
{
const std::vector<size_type> indices = get_index_vector();
std::vector<types::signed_global_dof_index> int_indices(indices.size());
std::copy(indices.begin(), indices.end(), int_indices.begin());
const Teuchos::ArrayView<types::signed_global_dof_index> arr_view(
int_indices);
return Utilities::Trilinos::internal::make_rcp<
Tpetra::Map<int, types::signed_global_dof_index, NodeType>>(
size(),
arr_view,
0,
# ifdef DEAL_II_WITH_MPI
Utilities::Trilinos::internal::make_rcp<Teuchos::MpiComm<int>>(
communicator)
# else
Utilities::Trilinos::internal::make_rcp<Teuchos::Comm<int>>()
# endif // DEAL_II_WITH_MPI
);
}
}
# endif
Epetra_Map
IndexSet::make_trilinos_map(const MPI_Comm communicator,
const bool overlapping) const
{
compress();
(void)communicator;
if constexpr (running_in_debug_mode())
{
if (!overlapping)
{
const size_type n_global_elements =
Utilities::MPI::sum(n_elements(), communicator);
Assert(n_global_elements == size(),
ExcMessage("You are trying to create an Epetra_Map object "
"that partitions elements of an index set "
"between processors. However, the union of the "
"index sets on different processors does not "
"contain all indices exactly once: the sum of "
"the number of entries the various processors "
"want to store locally is " +
std::to_string(n_global_elements) +
" whereas the total size of the object to be "
"allocated is " +
std::to_string(size()) +
". In other words, there are "
"either indices that are not spoken for "
"by any processor, or there are indices that are "
"claimed by multiple processors."));
}
}
// Find out if the IndexSet is ascending and 1:1. This corresponds to a
// linear EpetraMap. Overlapping IndexSets are never 1:1.
const bool linear =
overlapping ? false : is_ascending_and_one_to_one(communicator);
if (linear)
return Epetra_Map(TrilinosWrappers::types::int_type(size()),
TrilinosWrappers::types::int_type(n_elements()),
0,
# ifdef DEAL_II_WITH_MPI
Epetra_MpiComm(communicator)
# else
Epetra_SerialComm()
# endif
);
else
{
const std::vector<size_type> indices = get_index_vector();
return Epetra_Map(
TrilinosWrappers::types::int_type(-1),
TrilinosWrappers::types::int_type(n_elements()),
(n_elements() > 0 ?
reinterpret_cast<const TrilinosWrappers::types::int_type *>(
indices.data()) :
nullptr),
0,
# ifdef DEAL_II_WITH_MPI
Epetra_MpiComm(communicator)
# else
Epetra_SerialComm()
# endif
);
}
}
#endif
#ifdef DEAL_II_WITH_PETSC
IS
IndexSet::make_petsc_is(const MPI_Comm communicator) const
{
std::vector<size_type> indices;
fill_index_vector(indices);
// If the size of the index set can be converted to a PetscInt then every
// value can also be converted
AssertThrowIntegerConversion(static_cast<PetscInt>(size()), size());
const auto local_size = static_cast<PetscInt>(n_elements());
AssertIntegerConversion(local_size, n_elements());
size_type i = 0;
std::vector<PetscInt> petsc_indices(n_elements());
for (const auto &index : *this)
{
const auto petsc_index = static_cast<PetscInt>(index);
AssertIntegerConversion(petsc_index, index);
petsc_indices[i] = petsc_index;
++i;
}
IS is;
PetscErrorCode ierr = ISCreateGeneral(
communicator, local_size, petsc_indices.data(), PETSC_COPY_VALUES, &is);
AssertThrow(ierr == 0, ExcPETScError(ierr));
return is;
}
#endif
bool
IndexSet::is_ascending_and_one_to_one(const MPI_Comm communicator) const
{
// If the sum of local elements does not add up to the total size,
// the IndexSet can't be complete.
const size_type n_global_elements =
Utilities::MPI::sum(n_elements(), communicator);
if (n_global_elements != size())
return false;
if (n_global_elements == 0)
return true;
#ifdef DEAL_II_WITH_MPI
// Non-contiguous IndexSets can't be linear.
const bool all_contiguous =
(Utilities::MPI::min(is_contiguous() ? 1 : 0, communicator) == 1);
if (!all_contiguous)
return false;
bool is_globally_ascending = true;
// we know that there is only one interval
types::global_dof_index first_local_dof = (n_elements() > 0) ?
*(begin_intervals()->begin()) :
numbers::invalid_dof_index;
const unsigned int my_rank = Utilities::MPI::this_mpi_process(communicator);
const std::vector<types::global_dof_index> global_dofs =
Utilities::MPI::gather(communicator, first_local_dof, 0);
if (my_rank == 0)
{
// find out if the received std::vector is ascending
types::global_dof_index index = 0;
while (global_dofs[index] == numbers::invalid_dof_index)
++index;
types::global_dof_index old_dof = global_dofs[index++];
for (; index < global_dofs.size(); ++index)
{
const types::global_dof_index new_dof = global_dofs[index];
if (new_dof != numbers::invalid_dof_index)
{
if (new_dof <= old_dof)
{
is_globally_ascending = false;
break;
}
else
old_dof = new_dof;
}
}
}
// now broadcast the result
int is_ascending = is_globally_ascending ? 1 : 0;
int ierr = MPI_Bcast(&is_ascending, 1, MPI_INT, 0, communicator);
AssertThrowMPI(ierr);
return (is_ascending == 1);
#else
return true;
#endif // DEAL_II_WITH_MPI
}
std::size_t
IndexSet::memory_consumption() const
{
return (MemoryConsumption::memory_consumption(ranges) +
MemoryConsumption::memory_consumption(is_compressed) +
MemoryConsumption::memory_consumption(index_space_size) +
sizeof(compress_mutex));
}
// explicit template instantiations
#ifndef DOXYGEN
# ifdef DEAL_II_WITH_TRILINOS
# ifdef DEAL_II_TRILINOS_WITH_TPETRA
template IndexSet::IndexSet(
const Teuchos::RCP<const Tpetra::Map<
int,
types::signed_global_dof_index,
LinearAlgebra::TpetraWrappers::TpetraTypes::NodeType<MemorySpace::Host>>>
&);
# if defined(KOKKOS_ENABLE_CUDA) || defined(KOKKOS_ENABLE_HIP) || \
defined(KOKKOS_ENABLE_SYCL)
template IndexSet::IndexSet(
const Teuchos::RCP<const Tpetra::Map<
int,
types::signed_global_dof_index,
LinearAlgebra::TpetraWrappers::TpetraTypes::NodeType<MemorySpace::Default>>>
&);
# endif
template LinearAlgebra::TpetraWrappers::TpetraTypes::MapType<MemorySpace::Host>
dealii::IndexSet::make_tpetra_map<
LinearAlgebra::TpetraWrappers::TpetraTypes::NodeType<MemorySpace::Host>>(
const MPI_Comm,
bool) const;
# if defined(KOKKOS_ENABLE_CUDA) || defined(KOKKOS_ENABLE_HIP) || \
defined(KOKKOS_ENABLE_SYCL)
template LinearAlgebra::TpetraWrappers::TpetraTypes::MapType<
MemorySpace::Default>
dealii::IndexSet::make_tpetra_map<
LinearAlgebra::TpetraWrappers::TpetraTypes::NodeType<MemorySpace::Default>>(
const MPI_Comm,
bool) const;
# endif
template Teuchos::RCP<
LinearAlgebra::TpetraWrappers::TpetraTypes::MapType<MemorySpace::Host>>
dealii::IndexSet::make_tpetra_map_rcp<
LinearAlgebra::TpetraWrappers::TpetraTypes::NodeType<MemorySpace::Host>>(
const MPI_Comm,
bool) const;
# if defined(KOKKOS_ENABLE_CUDA) || defined(KOKKOS_ENABLE_HIP) || \
defined(KOKKOS_ENABLE_SYCL)
template Teuchos::RCP<
LinearAlgebra::TpetraWrappers::TpetraTypes::MapType<MemorySpace::Default>>
dealii::IndexSet::make_tpetra_map_rcp<
LinearAlgebra::TpetraWrappers::TpetraTypes::NodeType<MemorySpace::Default>>(
const MPI_Comm,
bool) const;
# endif
# endif
# endif
#endif
DEAL_II_NAMESPACE_CLOSE
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