Task: med-bio
Section: debian-med
Description: Debian Med micro-biology packages
 This metapackage will install Debian packages related to molecular biology,
 structural biology and bioinformatics for use in life sciences.
Relevance: 10
Key: 
 med-bio
Packages: list
 altree
 fastdnaml
 njplot
 tree-puzzle
 treeviewx
 fastlink
 loki
 plink
 r-cran-qtl
 amap-align
 boxshade
 gff2aplot
 muscle
 sim4
 sibsim4
 wise
 bwa
 mummer
 blast2
 mafft
 t-coffee
 kalign
 hmmer
 exonerate
 dialign
 dialign-tx
 poa
 probcons
 proda
 sigma-align
 emboss
 last-align
 maq
 ssake
 velvet
 infernal
 rnahybrid
 adun.app
 garlic
 gamgi
 gdpc
 ghemical
 pymol
 r-other-bio3d
 massxpert
 gromacs
 rasmol
 plasmidomics
 gff2ps
 ncbi-epcr
 ncbi-tools-bin
 ncbi-tools-x11
 perlprimer
 readseq
 tigr-glimmer
 melting
 mipe
 primer3
 glam2
 phyml
 autodock
 mustang
 theseus
 staden-io-lib-utils
 samtools
 r-bioc-hilbertvis
 r-other-mott-happy
 alien-hunter
 ncoils
 picard-tools
 ballview

Task: med-bio-dev
Section: debian-med
Description: Debian Med packages for development of micro-biology applications
 This metapackage will install Debian packages which might be helpful
 for development of applications for micro-biological research.
Relevance: 10
Key: 
 med-bio-dev
Packages: list
 bioperl
 bioperl-run
 libncbi6-dev
 mcl
 biosquid
 libvibrant6-dev
 python-biopython
 libbio-ruby
 libbiojava-java
 libqsearch-dev
 libgenome-1.3-0-dev
 libbio-mage-perl
 libajax6-dev
 libnucleus6-dev
 libtfbs-perl
 libgo-perl
 r-cran-genetics
 r-cran-haplo.stats
 octave-bioinfo
 libbio-graphics-perl
 libbio-primerdesigner-perl
 libace-perl
 libstaden-read-dev
 libsrf-dev
 seqan-dev
 libbio-mage-utils-perl

Task: med-cloud
Section: debian-med
Description: Debian Med bioinformatics applications usable in cloud computing
 This metapackage will install Debian packages related to molecular biology,
 structural biology and bioinformatics for use in life sciences, that do not
 depend on graphical toolkits and therefore can fit on system images for use
 in cloud computing clusters, where space can be limited.
Relevance: 10
Key: 
 med-cloud
Packages: list
 autodock

Task: med-data
Section: debian-med
Description: Debian Med drug databases
 There is at least one free medical drug database packaged for Debian
 which can be installed using this metapackage.  It is supported by the
 GNUmed Electronic Medical Record package.
Relevance: 10
Key: 
 med-data
Packages: list
 freediams

Task: med-epi
Section: debian-med
Description: Debian Med epidemiology related packages
 This metapackage will install tools that are useful in epidemiological
 research.  Several packages making use of the GNU R data language for
 statistical investigation.  It might be a good idea to read the paper
 "A short introduction to R for Epidemiology" at
 http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Relevance: 10
Key: 
 med-epi
Packages: list
 epigrass
 r-cran-epibasix
 r-cran-epitools
 r-cran-epi
 r-cran-diagnosismed
 r-cran-epicalc
 r-cran-epir

Task: med-imaging
Section: debian-med
Description: Debian Med imaging packages
 This metapackage will install Debian packages which might be useful in
 medical image processing.
 .
 It installs several packages supporting DICOM (Digital Imaging and
 Communications in Medicine) which is the de-facto standard for medical
 image management. The standard defines data structures and services for
 the exchange of medical images and related information. The latest release
 has been published in 2008 and consists of 18 parts.
 .
 For more information, you can visit the NEMA homepage
 http://medical.nema.org/ .
 .
 The status of the official DICOM base standard plus all the
 supplements and correction items are summarized at David Clunie's webpage:
 http://www.dclunie.com/dicom-status/status.html
 where you'll find direct links to the most recent yearly edition
 ftp://medical.nema.org/medical/dicom/2008/ .
Relevance: 10
Key: 
 med-imaging
Packages: list
 amide
 ctsim
 ctn
 dicomnifti
 imagej
 minc-tools
 medcon
 python-nifti
 xmedcon
 dcmtk
 nifti-bin
 aeskulap
 fslview
 via-bin
 gwyddion
 sofa-apps
 python-mvpa
 python-nipy
 python-nipype
 caret
 libgdcm-tools
 slicer
 lipsia
 dicom3tools
 odin
 dicomscope
 pixelmed-java
 voxbo
 mrtrix
 ants
 itksnap
 openmeeg-tools

Task: med-imaging-dev
Section: debian-med
Description: Debian Med packages for medical image development
 This metapackage will install Debian packages which might be useful
 for developing applications for medical image processing.
Relevance: 10
Key: 
 med-imaging-dev
Packages: list
 ctn-dev
 cimg-dev
 libminc-dev
 libmdc2-dev
 libnifti-dev
 libigstk4-dev
 libinsighttoolkit3-dev
 libvolpack1-dev
 libgdcm2-dev
 python-gdcm
 python-mvpa
 python-nipy
 python-nipype
 libvia-dev
 odin
 libcv-dev
 libvxl1-dev
 libteem1-dev
 gmic
 libgiftiio-dev
 python-dicom
 libopenmeeg-dev

Task: med-pharmacy
Section: debian-med
Description: Debian Med packages for pharmaceutical research
 This metapackage contains dependencies for a
 collection of software and documentation which is useful for
 pharmaceutical research.
Relevance: 10
Key: 
 med-pharmacy
Packages: list
 chemtool

Task: med-physics
Section: debian-med
Description: Debian Med packages for medical physicists
 This metapackage contains dependencies for a
 collection of software and documentation which is useful for
 medical physicists in radiation oncology, diagnostics imaging
 and related fields.
Relevance: 10
Key: 
 med-physics
Packages: list
 octave3.2
 r-base

Task: med-practice
Section: debian-med
Description: Debian Med packages for practice management
 This metapackage contains dependencies for a collection of software
 which might be helpful for practitioners to manage their practice.
Relevance: 10
Key: 
 med-practice
Packages: list
 gnumed-client
 gnumed-server
 libchipcard-tools
 aeskulap
 freediams
 r-cran-medadherence

Task: med-psychology
Section: debian-med
Description: Debian Med packages for psychology
 This metapackage contains dependencies for a collection of software
 which might be helpful for psychological research.
Relevance: 10
Key: 
 med-psychology
Packages: list
 python-pyepl
 praat
 r-cran-foreign
 psignifit
 r-cran-psy
 psychopy

Task: med-statistics
Section: debian-med
Description: Debian Med statistics
 This metapackage will install packages which are helpful to do statistics
 with a special focus on tasks in medical care.
Relevance: 10
Key: 
 med-statistics
Packages: list
 r-cran-qvalue
 r-cran-randomforest

Task: med-tools
Section: debian-med
Description: Debian Med several tools
 This metapackage will install tools for several purposes in health care.
 Currently it contains some simple programs for Personal Health.
Relevance: 10
Key: 
 med-tools
Packages: list
 mencal
 cycle
 pondus
 wgerman-medical
 hunspell-de-med
 quitcount
 workrave

Task: med-typesetting
Section: debian-med
Description: Debian Med support for typesetting and publishing
 This metapackage will install Debian packages that might be helpful
 for typesetting and publishing in medical care and structural
 biology.
Relevance: 10
Key: 
 med-typesetting
Packages: list
 texlive-science
 texlive-latex-extra