1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
|
Task: Cloud
Description: Debian Med bioinformatics applications usable in cloud computing
This metapackage will install Debian packages related to molecular biology,
structural biology and bioinformatics for use in life sciences, that do not
depend on graphical toolkits and therefore can fit on system images for use
in cloud computing clusters, where space can be limited.
X-Begin-Category: Phylogenetic analysis
Depends:
altree,
fastdnaml,
phyml,
tree-puzzle | tree-ppuzzle
X-End-Category: Phylogenetic analysis
X-Begin-Category: Genetics
Depends:
alien-hunter,
bagphenotype,
fastlink,
loki,
plink,
r-other-valdar-bagphenotype.library,
r-cran-qtl,
r-other-mott-happy
X-End-Category: Genetics
X-Begin-Category: Sequence alignments and related programs.
Depends:
amap-align,
blast2,
boxshade,
dialign,
dialign-tx,
exonerate,
gff2aplot,
glam2,
gmap,
hmmer,
kalign,
mafft,
mummer,
muscle,
poa,
probcons,
proda,
python-pynast,
sibsim4,
sigma-align,
sim4,
t-coffee,
wise
Depends: clustalw | clustalw-mpi
Comment: non-free
X-End-Category: Sequence alignments and related programs.
X-Begin-Category: EMBOSS
Depends:
emboss,
embassy-domalign,
embassy-domainatrix,
embassy-domsearch,
embassy-phylip
X-End-Category: EMBOSS
X-Begin-Category: High throughput sequencing
Depends:
bwa,
last-align,
maq,
picard-tools,
r-bioc-hilbertvis,
samtools,
ssake,
velvet
X-End-Category: High throughput sequencing
X-Begin-Category: Analysis of RNA sequences.
Depends:
infernal,
rnahybrid
X-End-Category: Analysis of RNA sequences.
X-Begin-Category: Molecular modelling and molecular dynamics
Depends:
gromacs,
mustang,
theseus
Depends: autodock, raster3d
Comment: non-free
X-End-Category: Molecular modelling and molecular dynamics
X-Begin-Category: Tools for the molecular biologist.
Depends:
acedb-other,
melting, mipe,
ncbi-epcr,
ncbi-tools-bin,
ncoils,
primer3,
readseq,
tigr-glimmer,
seqan-apps,
staden-io-libs-utils
Depends: python-cogent
Comment: non-free
X-End-Category: Tools for the molecular biologist.
|
