Task: Imaging Development
Description: Debian Med packages for medical image development
 This metapackage will install Debian packages which might be useful
 for developing applications for medical image processing.

Depends: ctn-dev, cimg-dev, libminc-dev, libmdc2-dev

Depends: libnifti-dev

Depends: libigstk4-dev

Suggests: igstk-examples

Depends: libinsighttoolkit3-dev

Suggests: insighttoolkit3-examples

Suggests: libnifti-doc

Suggests: libvtk5.4

Depends: libvolpack1-dev

Depends: libgdcm2-dev
Depends: python-gdcm

Suggests: python-libavg
Why: Homepage (http://www.libavg.de) shows some potential medical applications

Depends: python-mvpa
Why: Suggested by maintainer Michael Hanke <michael.hanke@gmail.com>

Depends: python-nipy

Depends: python-nipype

Depends: python-nitime
WNPP: 600714
License: BSD-3
Pkg-Description: timeseries analysis for neuroscience data (nitime)
 Nitime is a Python module for time-series analysis of data from
 neuroscience experiments.  It contains a core of numerical algorithms
 for time-series analysis both in the time and spectral domains, a set
 of container objects to represent time-series, and auxiliary objects
 that expose a high level interface to the numerical machinery and
 make common analysis tasks easy to express with compact and
 semantically clear code.

Depends: libvia-dev

Depends: odin

Depends: libcv-dev

Depends: libvxl1-dev

Depends: libteem1-dev

Depends: gmic

Depends: libgiftiio-dev

Depends: libvista2-dev
Homepage: http://mia.sourceforge.net/
License: GPL
Pkg-Description: software environment for computer vision research
 Vista is a software environment for computer vision research. It is
 designed to support not only images, but also edge sets, camera models,
 and more complex  data structures. Vista includes libraries of common
 computer vision and image  processing algorithms. It is written in
 ANSI C, for UNIX platforms running X Windows, and it is freely available.
 The original development was done  at University of British Columbia
 (http://www.cs.ubc.ca/nest/lci/vista/vista.html).
 .
 Because the development was stalled by the original authors the
 development continued in the "Tools for Medical Image Analysis"
 framework (http://mia.sourceforge.net/) which is maintained by
 Max Planck Institute of Cognitive Neuroscience
 (http://www.cns.mpg.de/).
 .
 This is the development package.
Remark: With libvia-dev an alternative is already part of Debian.

Depends: libmni-perllib-perl
Homepage: http://packages.bic.mni.mcgill.ca/tgz/
License: Artistic License
Responsible: NeuroDebian Team <team@neuro.debian.net>
Pkg-URL: http://apsy.gse.uni-magdeburg.de/svn/fsl/libmni-perllib-perl/trunk/debian/
Pkg-Description: The MNI Perl Library
 Collection of various Perl module used by other MNI software
 packages.
Remark: There was some previous work on this software which is stalled currently
 Michael Hanke agreed to take over his stuff from mentors 
 http://mentors.debian.net/cgi-bin/sponsor-pkglist?action=details;package=libmni-perllib-perl
 to Debian Med svn and start group maintenance. 

Depends: libbiosig-dev
License: GPL
Responsible: NeuroDebian Team <team@neuro.debian.net>
WNPP: 585533
Homepage: http://biosig.sf.net/
Vcs-Git: git://git.debian.org/pkg-exppsy/biosig4c++.git
Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/biosig4c++.git;a=summary
Pkg-URL: http://neuro.debian.net/pkgs/libbiosig-dev.html
Pkg-Description: library for accessing files in biomedical data formats
 A library for accessing files in several biomedical data formats
 (including EDF, BDF, GDF, BrainVision, BCI2000, CFWB, HL7aECG,
 SCP_ECG (EN1064), MFER, ACQ, CNT(Neuroscan), DEMG, EGI, EEG1100,
 FAMOS, SigmaPLpro, TMS32).  The complete list of supported file
 formats is available at http://hci.tugraz.at/schloegl/biosig/TESTED .
 .
 This package provides header files and static library libbiosig.a
 which provides access to a variety of dataformats.


Depends: libgiftiio-dev
License: Public domain
Pkg-URL: http://neuro.debian.net/pkgs/libgifti-dev.html


Depends: python-dicom
License: MIT
Pkg-URL: http://neuro.debian.net/pkgs/python-dicom.html


Depends: libopenmeeg-dev
License: CeCILL-B
Published-Title: OpenMEEG: opensource software for quasistatic bioelectromagnetics
Published-Authors: Alexandre Gramfort, Théodore Papadopoulo, Emmanuel Olivi, Maureen Clerc
Published-In: Preprint
Published-URL: http://hal.archives-ouvertes.fr/inria-00467061/en/


Depends: python-nibabel
License: Expat
WNPP: 600275
Responsible: NeuroDebian Team <team@neuro.debian.net>
Homepage: http://nipy.sourceforge.net/nibabel
Pkg-URL: http://neuro.debian.net/pkgs/python-nibabel.html
Vcs-Git: git://git.debian.org/git/pkg-exppsy/pynifti.git
Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/pynifti.git
Pkg-Description: Python bindings to various neuroimaging data formats
 This package provides read and write access to some common medical and
 neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI,
 NIfTI1, MINC, as well as PAR/REC. The various image format classes give full
 or selective access to header (meta) information and access to the image data
 is made available via NumPy arrays.  NiBabel is the successor of PyNIfTI.
 .
 This package also provides a commandline tool for conversion of PAR/REC to
 NIfTI images.

Depends: libgdf-dev
License: LGPL-3
WNPP: 601707
Responsible: NeuroDebian Team <team@neuro.debian.net>
Homepage: http://sourceforge.net/projects/libgdf
Pkg-URL: http://neuro.debian.net/pkgs/libgdf-dev.html
Vcs-Git: git://git.debian.org/git/pkg-exppsy/libgdf.git
Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/libgdf.git
Pkg-Description: IO library for the GDF (general dataformat for biosignals)
 GDF (General Dataformat for Biosignals) is intended to provide a generic
 storage for biosignals, such as EEG, ECG, MEG etc.