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Tigr Glimmer: Gene detection in archea and bacteria
Some information about tigr-glimmer from the Debian Med project.
Developed by the TIGR institute this software detects coding sequences in
bacteria and archea.
Glimmer is a system for finding genes in microbial DNA, especially the
genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated
Markov Modeler) uses interpolated Markov models (IMMs) to identify the
coding regions and distinguish them from noncoding DNA.
Homepage: http://www.tigr.org/software/glimmer/
An overview about the various tools are given by the following manpages:
man glimmer2 (start with this)
man build-icm
man extract
man long-orfs
More or less simple syntax help without detailed information is given by
man adjust
man anomaly
man check
man codon-usage
man compare-lists
man generate
man get-len
man run-glimmer2
man get-putative
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