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Task: Epidemiology
Description: Debian Med epidemiology related packages
This metapackage will install tools that are useful in epidemiological
research. Several packages making use of the GNU R data language for
statistical investigation. It might be a good idea to read the paper
"A short introduction to R for Epidemiology" at
http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf
Depends: epigrass
Suggests: r-cran-msm
Depends: r-cran-epibasix
Depends: r-cran-epitools
X-Comment: See also: http://sites.google.com/site/medepi/epitools
Depends: r-cran-surveillance
Depends: r-cran-epi
Depends: r-cran-diagnosismed, r-cran-epicalc, r-cran-epir
Depends: ushahidi
Depends: netepi-analysis
Remark: See also: http://www.stockholmchallenge.se/data/2123 and
http://www.publish.csiro.au/?act=view_file&file_id=NB07103.pdf
Depends: netepi-collection
Remark: See also: http://www.stockholmchallenge.se/data/2123 and
http://www.publish.csiro.au/?act=view_file&file_id=NB07103.pdf
Suggests: repast
Homepage: http://repast.sourceforge.net/
License: BSD
WNPP: 179183
Pkg-Description: framework for creating agent based simulations
Repast Simphony is a free and open source agent-based modeling toolkit
that simplifies model creation and use. Repast Simphony offers users a
rich variety of features including the following:
* Fluid model component development using any mixture of Java, Groovy,
and flowcharts in each project;
* A pure Java point-and-click model execution environment that includes
built-in results logging and graphing tools as well as automated
connections to a variety of optional external tools including the R
statistics environment, *ORA and Pajek network analysis plugins, A
live agent SQL query tool plugin, the VisAD scientific visualization
package, the Weka data mining platform, many popular spreadsheets,
the MATLAB computational mathematics environment, and the iReport
visual report designer;
* An extremely flexible hierarchically nested definition of space
including the ability to do point-and-click and modeling and
visualization of 2D environments; 3D environments; networks including
full integration with the JUNG network modeling library as well as
Microsoft Excel spreadsheets and UCINET DL file importing; and
geographical spaces including 2D and 3D Geographical Information
Systems (GIS) support;
* A range of data storage "freeze dryers" for model check pointing
and restoration including XML file storage, text file storage, and
database storage;
* A fully concurrent multithreaded discrete event scheduler;
* Libraries for genetic algorithms, neural networks, regression, random
number generation, and specialized mathematics;
* An automated Monte Carlo simulation framework which supports multiple
modes of model results optimization;
* Built-in tools for integrating external models;
* Distributed computing with Terracotta;
* Full object-orientation;
* Optional end-to-end XML simulation
* A point-and-click model deployment system
Remark: Please read also
http://www.tbiomed.com/content/5/1/11
http://lists.debian.org/debian-med/2009/08/msg00013.html (and following mails)
X-Suggests: swarm
X-Homepage: http://www.swarm.org/
X-License: GPL
X-WNPP: 179182
X-Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/swarm/trunk/
X-Pkg-Description: multi-agent simulation of complex systems
Swarm is a software package for multi-agent simulation of complex
systems, originally developed at the Santa Fe Institute. Swarm is
intended to be a useful tool for researchers in a variety of
disciplines. The basic architecture of Swarm is the simulation of
collections of concurrently interacting agents: with this architecture,
we can implement a large variety of agent based models.
X-Remark: Jakson Alves de Aquino has a guide to installing Swarm 2.2 on Ubuntu and Debian
This guide vanished from the web but the WayBackMachine conserved
a copy at
http://web.archive.org/web/20071225020842/http://jalvesaq.googlepages.com/swarm.html
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