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Task: Laboratory
Description: Debian Med suggestions for medical laboratories
Currently Debian Med does not yet contain any software which is
specifically intended to run a medical laboratory. We just provide a
list of Free Software that might be used and which might be included
into Debian at a later point in time provided somebody is willing to
take over the packaging work.
Depends: openelis
Homepage: http://openelis.uhl.uiowa.edu/
License: UIRF Open-source Based Public Software License
Pkg-Description: Enterprise Laboratory Information System
OpenELIS is a robust Enterprise Laboratory Information System built around an
extensible and scalable framework. OpenELIS is designed and developed through
the collaborative efforts of Public Health Laboratories to accommodate
business processes that are common to all public health laboratories;
encompassing clinical, environmental, newborn screening, and animal testing.
.
The goal of the OpenELIS team is to develop a state of the art system that
is economically sustainable by reducing both initial investment and ongoing
maintenance costs. By using an open source approach, we ensure that the project
will continue to evolve and meet the changing needs of the community.
Depends: openfreezer
Homepage: http://www.openfreezer.org/
License: GPLv4
Registration: http://www.openfreezer.org/download.html
Pkg-Description: Laboratory analysis, research and investigation software application
OpenFreezer Laboratory Reagent Tracking and Workflow Management System is an
open-source information management system for biological laboratories. The
system tracks information on all reagents within the laboratory, including
specific properties of each reagent (i.e. sequences, external identifiers), and
on all the physical preparations of these reagents (storage locations, physical
characteristics). Complementing this repository are workflow tools, such as
primer design and automated feature mapping, making OpenFreezer a valuable tool
for the bench scientist.
Published-Title: OpenFreezer: a reagent information management software system
Published-Authors: Olhovsky et al.
Published-In: Nature Methods Vol. 8
Published-Year: 2011
Published-URL: http://www.nature.com/nmeth/journal/v8/n8/full/nmeth.1658.html
Published-DOI: 10.1038/nmeth.1658
Depends: catissuesuite
License: to be clarified
Homepage: https://cabig.nci.nih.gov/tools/catissuesuite
Pkg-Description: tool for biospecimen inventory management
CaTissue Suite is caBIG's biorepository tool for biospecimen inventory
management, tracking, and annotation. This tool permits users to enter
and retrieve data concerning the collection, storage, quality assurance,
and distribution of biospecimens. caTissue Suite is sufficiently
scalable and configurable for deployment across biospecimen resources of
varying size and function, and that manage multiple types of
biospecimens (tissue, biofluids, nucleic acid). The tool provides
search functionality for both the biorepository staff and research
scientist, who may be interested in searching for and requesting
biospecimens for correlative science studies.
.
caTissue Suite features include:
* Customizable user roles and privileges structure to support multiple,
independent repositories within a single caTissue installation.
* Collection Protocol template creation allows representation of pre-defined
specimen processing schemes and multiple study arms and time points in
order to expedite data entry.
* Patient study registration with duplicate patient checking algorithm.
* Facilitated specimen accessioning, recording of processing events,
creation and recording of biospecimen derivatives and aliquots.
* Recording of biospecimen shipping and tracking events across repositories
in a single caTissue installation.
* Improved data form display for custom annotations (Dynamic Extensions
tool), including new CAP checklist based forms for pathology annotation
of major organ systems.
* caTIES-like pathology report text annotation.
* Advanced Query “Wizard”, allowing for the creation and saving of complex
queries which can be run as pre-defined or parameterized searches.
* Searches based on temporal relationships.
* Specimen requisition and request tracking.
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