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#!/bin/sh -e
export LC_ALL=C.UTF-8
# R DESCRIPTION files use the debian control file format
# (see R package manual 1.1.1)
pkgname=$(grep-dctrl -s Package -n '' DESCRIPTION)
debname=$(grep-dctrl -s Source -n '' debian/control)
bioc=$(grep-dctrl -s biocViews -n '' DESCRIPTION)
# Test 1: loading
echo "Test: Try to load the R library ${pkgname}"
R --no-save -e "library('${pkgname}')"
##########
echo "Other tests are currently unsupported!"
echo "They will be progressively added."
exit 0
##########
# Create temp environment for testing
if [ "$AUTOPKGTEST_TMP" = "" ] ; then
AUTOPKGTEST_TMP=`mktemp -d /tmp/${debname}-test.XXXXXX`
trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cp -a * $AUTOPKGTEST_TMP
cd $AUTOPKGTEST_TMP
# Test 2: bioc
if [ "$bioc" != "" ] ; then
echo "Bioconductor package detected"
echo "Test: Run the Bioconductor testing workflow for ${pkgname}"
R --no-save -e "BiocGenerics:::testPackage('${pkgname}')"
exit 0
fi
# Test 3: testthat
if [ -f "tests/testthat.R" ] ; then
echo "Test: Run the testthat workflow for ${pkgname}"
cd tests
R --no-save < testthat.R
exit 0
fi
# Test 5: RUnit
NBTEST=`find tests -type f -name "*.R" | wc -l`
if [ "$NBTEST" -gt "0" ] ; then
echo "Test: Run the RUnit workflow for ${pkgname}"
cd tests
for testfile in *.R; do
echo "Start: ${testfile}"
R --no-save < ${testfile}
done
exit 0
fi
# Test 6: vignettes
if [ -d "vignettes" ] ; then
echo "Test: Try to build vignettes"
for vignette in $(find vignettes -iname '*.rnw' -or -iname '*.rmd'); do
echo "Test: Try to build VIGNETTE $vignette"
R CMD Sweave $vignette
done
exit 0
fi
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